data_4U82
#
_model_server_result.job_id            mPmaysBo2ZBt0UHepTxcFg 
_model_server_result.datetime_utc      '2024-11-02 15:21:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u82 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4U82 
#
_exptl.entry_id    4U82 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.392 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4U82 
_cell.length_a            57.079 
_cell.length_b            57.079 
_cell.length_c            158.618 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U82 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 33 A ASP 33 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc2 B MG MG . A MG 301 1_555 C O2B FPS . A FPS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc3 B MG MG . A MG 301 1_555 C O1A FPS . A FPS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc4 B MG MG . A MG 301 1_555 E O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc5 B MG MG . A MG 301 1_555 E O HOH . A HOH 432 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc6 B MG MG . A MG 301 1_555 E O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
#
_chem_comp.formula           'C15 H28 O6 P2 S' 
_chem_comp.formula_weight    398.392 
_chem_comp.id                FPS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'FARNESYL THIOPYROPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 S1 FPS sing 83 n n 
C1 C2 FPS sing 84 n n 
C1 H11 FPS sing 85 n n 
C1 H12A FPS sing 86 n n 
S1 PA FPS sing 87 n n 
C2 C3 FPS doub 88 e n 
C2 H2 FPS sing 89 n n 
C3 C4 FPS sing 90 n n 
C3 C5 FPS sing 91 n n 
C4 H41 FPS sing 92 n n 
C4 H42 FPS sing 93 n n 
C4 H43 FPS sing 94 n n 
C5 C6 FPS sing 95 n n 
C5 H51 FPS sing 96 n n 
C5 H52 FPS sing 97 n n 
C6 C7 FPS sing 98 n n 
C6 H61 FPS sing 99 n n 
C6 H62 FPS sing 100 n n 
C7 C8 FPS doub 101 e n 
C7 H7 FPS sing 102 n n 
C8 C10 FPS sing 103 n n 
C8 C9 FPS sing 104 n n 
C10 C11 FPS sing 105 n n 
C10 H101 FPS sing 106 n n 
C10 H102 FPS sing 107 n n 
C9 H91 FPS sing 108 n n 
C9 H92 FPS sing 109 n n 
C9 H93 FPS sing 110 n n 
C11 C12 FPS sing 111 n n 
C11 H111 FPS sing 112 n n 
C11 H112 FPS sing 113 n n 
C12 C13 FPS doub 114 n n 
C12 H12 FPS sing 115 n n 
C13 C14 FPS sing 116 n n 
C13 C15 FPS sing 117 n n 
C14 H141 FPS sing 118 n n 
C14 H142 FPS sing 119 n n 
C14 H143 FPS sing 120 n n 
C15 H151 FPS sing 121 n n 
C15 H152 FPS sing 122 n n 
C15 H153 FPS sing 123 n n 
PA O1A FPS doub 124 n n 
PA O2A FPS sing 125 n n 
PA O3A FPS sing 126 n n 
O2A H2A FPS sing 127 n n 
O3A PB FPS sing 128 n n 
PB O1B FPS sing 129 n n 
PB O2B FPS doub 130 n n 
PB O3B FPS sing 131 n n 
O1B H1B FPS sing 132 n n 
O3B H3B FPS sing 133 n n 
#
_atom_sites.entry_id                     4U82 
_atom_sites.fract_transf_matrix[1][1]    0.01752 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01752 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006304 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 301 1 MG MG . 
C 3 FPS A 1 302 3 FPS FPS . 
D 4 SO4 A 1 303 2 SO4 SO4 . 
E 5 HOH A 1 401 14 HOH HOH . 
E 5 HOH A 2 402 49 HOH HOH . 
E 5 HOH A 3 403 56 HOH HOH . 
E 5 HOH A 4 404 83 HOH HOH . 
E 5 HOH A 5 405 25 HOH HOH . 
E 5 HOH A 6 406 23 HOH HOH . 
E 5 HOH A 7 407 40 HOH HOH . 
E 5 HOH A 8 408 35 HOH HOH . 
E 5 HOH A 9 409 31 HOH HOH . 
E 5 HOH A 10 410 3 HOH HOH . 
E 5 HOH A 11 411 64 HOH HOH . 
E 5 HOH A 12 412 27 HOH HOH . 
E 5 HOH A 13 413 5 HOH HOH . 
E 5 HOH A 14 414 36 HOH HOH . 
E 5 HOH A 15 415 6 HOH HOH . 
E 5 HOH A 16 416 11 HOH HOH . 
E 5 HOH A 17 417 52 HOH HOH . 
E 5 HOH A 18 418 16 HOH HOH . 
E 5 HOH A 19 419 24 HOH HOH . 
E 5 HOH A 20 420 9 HOH HOH . 
E 5 HOH A 21 421 7 HOH HOH . 
E 5 HOH A 22 422 29 HOH HOH . 
E 5 HOH A 23 423 10 HOH HOH . 
E 5 HOH A 24 424 37 HOH HOH . 
E 5 HOH A 25 425 33 HOH HOH . 
E 5 HOH A 26 426 8 HOH HOH . 
E 5 HOH A 27 427 17 HOH HOH . 
E 5 HOH A 28 428 80 HOH HOH . 
E 5 HOH A 29 429 2 HOH HOH . 
E 5 HOH A 30 430 18 HOH HOH . 
E 5 HOH A 31 431 58 HOH HOH . 
E 5 HOH A 32 432 32 HOH HOH . 
E 5 HOH A 33 433 82 HOH HOH . 
E 5 HOH A 34 434 76 HOH HOH . 
E 5 HOH A 35 435 19 HOH HOH . 
E 5 HOH A 36 436 50 HOH HOH . 
E 5 HOH A 37 437 67 HOH HOH . 
E 5 HOH A 38 438 34 HOH HOH . 
E 5 HOH A 39 439 61 HOH HOH . 
E 5 HOH A 40 440 21 HOH HOH . 
E 5 HOH A 41 441 13 HOH HOH . 
E 5 HOH A 42 442 75 HOH HOH . 
E 5 HOH A 43 443 62 HOH HOH . 
E 5 HOH A 44 444 28 HOH HOH . 
E 5 HOH A 45 445 51 HOH HOH . 
E 5 HOH A 46 446 78 HOH HOH . 
E 5 HOH A 47 447 68 HOH HOH . 
E 5 HOH A 48 448 1 HOH HOH . 
E 5 HOH A 49 449 4 HOH HOH . 
E 5 HOH A 50 450 12 HOH HOH . 
E 5 HOH A 51 451 15 HOH HOH . 
E 5 HOH A 52 452 20 HOH HOH . 
E 5 HOH A 53 453 22 HOH HOH . 
E 5 HOH A 54 454 26 HOH HOH . 
E 5 HOH A 55 455 30 HOH HOH . 
E 5 HOH A 56 456 38 HOH HOH . 
E 5 HOH A 57 457 39 HOH HOH . 
E 5 HOH A 58 458 41 HOH HOH . 
E 5 HOH A 59 459 42 HOH HOH . 
E 5 HOH A 60 460 43 HOH HOH . 
E 5 HOH A 61 461 44 HOH HOH . 
E 5 HOH A 62 462 45 HOH HOH . 
E 5 HOH A 63 463 46 HOH HOH . 
E 5 HOH A 64 464 47 HOH HOH . 
E 5 HOH A 65 465 48 HOH HOH . 
E 5 HOH A 66 466 53 HOH HOH . 
E 5 HOH A 67 467 54 HOH HOH . 
E 5 HOH A 68 468 55 HOH HOH . 
E 5 HOH A 69 469 57 HOH HOH . 
E 5 HOH A 70 470 59 HOH HOH . 
E 5 HOH A 71 471 60 HOH HOH . 
E 5 HOH A 72 472 63 HOH HOH . 
E 5 HOH A 73 473 65 HOH HOH . 
E 5 HOH A 74 474 66 HOH HOH . 
E 5 HOH A 75 475 69 HOH HOH . 
E 5 HOH A 76 476 70 HOH HOH . 
E 5 HOH A 77 477 71 HOH HOH . 
E 5 HOH A 78 478 72 HOH HOH . 
E 5 HOH A 79 479 73 HOH HOH . 
E 5 HOH A 80 480 74 HOH HOH . 
E 5 HOH A 81 481 77 HOH HOH . 
E 5 HOH A 82 482 79 HOH HOH . 
E 5 HOH A 83 483 81 HOH HOH . 
E 5 HOH A 84 484 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FPS . . . C 3 21.411 2.148 9.865 1 23.63 ? C1 FPS 302 A 1 
HETATM 2 S S1 FPS . . . C 3 20.541 0.613 10.362 1 16.51 ? S1 FPS 302 A 1 
HETATM 3 C C2 FPS . . . C 3 22.529 1.518 9.233 1 25.52 ? C2 FPS 302 A 1 
HETATM 4 C C3 FPS . . . C 3 23.862 2.043 9.488 1 31.76 ? C3 FPS 302 A 1 
HETATM 5 C C4 FPS . . . C 3 24.137 3.33 10.387 1 30.65 ? C4 FPS 302 A 1 
HETATM 6 C C5 FPS . . . C 3 24.847 1.228 8.7 1 29.95 ? C5 FPS 302 A 1 
HETATM 7 C C6 FPS . . . C 3 25.82 0.646 9.646 1 32.25 ? C6 FPS 302 A 1 
HETATM 8 C C7 FPS . . . C 3 26.995 0.41 8.66 1 30.89 ? C7 FPS 302 A 1 
HETATM 9 C C8 FPS . . . C 3 27.203 -1.033 8.238 1 31.05 ? C8 FPS 302 A 1 
HETATM 10 C C10 FPS . . . C 3 28.24 -1.381 7.264 1 28.69 ? C10 FPS 302 A 1 
HETATM 11 C C9 FPS . . . C 3 26.258 -2.129 8.716 1 39.82 ? C9 FPS 302 A 1 
HETATM 12 C C11 FPS . . . C 3 29.585 -0.746 7.569 1 33.45 ? C11 FPS 302 A 1 
HETATM 13 C C12 FPS . . . C 3 30.524 -1.575 6.749 1 32.24 ? C12 FPS 302 A 1 
HETATM 14 C C13 FPS . . . C 3 31.178 -0.856 5.601 1 33.1 ? C13 FPS 302 A 1 
HETATM 15 C C14 FPS . . . C 3 32.083 -1.617 4.672 1 31.74 ? C14 FPS 302 A 1 
HETATM 16 C C15 FPS . . . C 3 30.732 0.518 5.196 1 36.94 ? C15 FPS 302 A 1 
HETATM 17 P PA FPS . . . C 3 19.845 1.321 12.116 1 16.08 ? PA FPS 302 A 1 
HETATM 18 O O1A FPS . . . C 3 19.301 2.793 12.043 1 15.68 ? O1A FPS 302 A 1 
HETATM 19 O O2A FPS . . . C 3 20.926 1.194 13.187 1 17.88 ? O2A FPS 302 A 1 
HETATM 20 O O3A FPS . . . C 3 18.616 0.363 12.432 1 14.99 ? O3A FPS 302 A 1 
HETATM 21 P PB FPS . . . C 3 17.194 0.585 13.085 1 15.47 ? PB FPS 302 A 1 
HETATM 22 O O1B FPS . . . C 3 17.502 0.849 14.586 1 18.35 ? O1B FPS 302 A 1 
HETATM 23 O O2B FPS . . . C 3 16.61 1.945 12.472 1 14.85 ? O2B FPS 302 A 1 
HETATM 24 O O3B FPS . . . C 3 16.342 -0.568 12.759 1 15.03 ? O3B FPS 302 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           24 
#