data_4U87 # _model_server_result.job_id pFr8GHtmDPTEDPoa7pZ3Ng _model_server_result.datetime_utc '2025-03-28 11:07:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":304}' # _entry.id 4U87 # _exptl.entry_id 4U87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.327 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BARIUM ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4U87 _cell.length_a 85.8 _cell.length_b 85.8 _cell.length_c 246.16 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -82.053333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 42 A ASP 42 1_555 E MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc2 B O GLU 16 B GLU 16 1_555 J BA BA . B BA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.19 ? metalc ? metalc3 B OD2 ASP 42 B ASP 42 1_555 K MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc4 B NE2 HIS 57 B HIS 57 1_555 K MN MN . B MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc5 B O ASP 129 B ASP 129 1_555 G BA BA . B BA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc6 B O VAL 132 B VAL 132 1_555 G BA BA . B BA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.308 ? metalc ? metalc7 B O ASP 166 B ASP 166 1_555 I BA BA . B BA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.349 ? metalc ? metalc8 C O GLU 16 C GLU 16 1_555 Q BA BA . C BA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.483 ? metalc ? metalc9 C OD2 ASP 42 C ASP 42 1_555 R MN MN . C MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc10 C O SER 44 C SER 44 1_555 O BA BA . C BA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.382 ? metalc ? metalc11 C O ILE 46 C ILE 46 1_555 O BA BA . C BA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.464 ? metalc ? metalc12 C O GLN 49 C GLN 49 1_555 O BA BA . C BA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc13 C O ASP 129 C ASP 129 1_555 M BA BA . C BA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? metalc ? metalc14 C O VAL 132 C VAL 132 1_555 M BA BA . C BA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc15 C O THR 133 C THR 133 1_555 N BA BA . C BA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.397 ? metalc ? metalc16 C O ASP 166 C ASP 166 1_555 P BA BA . C BA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.228 ? # _chem_comp.formula 'Ba 2' _chem_comp.formula_weight 137.327 _chem_comp.id BA _chem_comp.mon_nstd_flag . _chem_comp.name 'BARIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4U87 _atom_sites.fract_transf_matrix[1][1] 0.011655 _atom_sites.fract_transf_matrix[1][2] 0.006729 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL A 1 301 211 CL CL . E 3 MN A 1 302 301 MN MN . F 2 CL B 1 301 211 CL CL . G 4 BA B 1 302 212 BA BA . H 4 BA B 1 303 213 BA BA . I 4 BA B 1 304 214 BA BA . J 4 BA B 1 305 215 BA BA . K 3 MN B 1 306 301 MN MN . L 2 CL C 1 301 211 CL CL . M 4 BA C 1 302 212 BA BA . N 4 BA C 1 303 213 BA BA . O 4 BA C 1 304 214 BA BA . P 4 BA C 1 305 215 BA BA . Q 4 BA C 1 306 216 BA BA . R 3 MN C 1 307 301 MN MN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol BA _atom_site.label_atom_id BA _atom_site.label_comp_id BA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x -38.979 _atom_site.Cartn_y 2.389 _atom_site.Cartn_z -48.159 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 123.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id BA _atom_site.auth_comp_id BA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #