data_4U8D # _model_server_result.job_id hgMKiPkFYgX3Ax8XZwCtEQ _model_server_result.datetime_utc '2024-11-26 05:34:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 4U8D # _exptl.entry_id 4U8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U8D _cell.length_a 117.832 _cell.length_b 117.832 _cell.length_c 86.88 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 83 A ASP 83 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 A OD1 ASP 85 A ASP 85 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc3 A OG SER 87 A SER 87 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc4 A O THR 89 A THR 89 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc5 A OD1 ASP 113 A ASP 113 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc6 A OD1 ASP 115 A ASP 115 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc7 A OG SER 117 A SER 117 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc8 A O THR 119 A THR 119 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc9 C MG MG . A MG 201 1_555 J O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc10 C MG MG . A MG 201 1_555 J O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc11 D MG MG . A MG 202 1_555 J O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc12 J O HOH . A HOH 331 6_545 G MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc13 B OG1 THR 31 B THR 31 1_555 G MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc14 B O GLN 32 B GLN 32 1_555 G MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc15 B O ASP 33 B ASP 33 1_555 F MG MG . B MG 202 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc16 B OD2 ASP 50 B ASP 50 1_555 I MG MG . B MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc17 B O SER 61 B SER 61 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc18 B OD1 ASP 83 B ASP 83 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc19 B OD1 ASP 85 B ASP 85 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc20 B OG SER 87 B SER 87 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc21 B O THR 89 B THR 89 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc22 E MG MG . B MG 201 1_555 K O HOH . B HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc23 E MG MG . B MG 201 1_555 K O HOH . B HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc24 H MG MG . B MG 204 1_555 K O HOH . B HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc25 H MG MG . B MG 204 1_555 K O HOH . B HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc26 H MG MG . B MG 204 1_555 K O HOH . B HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc27 H MG MG . B MG 204 1_555 K O HOH . B HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc28 H MG MG . B MG 204 1_555 K O HOH . B HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4U8D _atom_sites.fract_transf_matrix[1][1] 0.008487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 3 MG MG . D 2 MG A 1 202 4 MG MG . E 2 MG B 1 201 2 MG MG . F 2 MG B 1 202 5 MG MG . G 2 MG B 1 203 6 MG MG . H 2 MG B 1 204 7 MG MG . I 2 MG B 1 205 8 MG MG . J 3 HOH A 1 301 72 HOH HOH . J 3 HOH A 2 302 63 HOH HOH . J 3 HOH A 3 303 188 HOH HOH . J 3 HOH A 4 304 133 HOH HOH . J 3 HOH A 5 305 35 HOH HOH . J 3 HOH A 6 306 144 HOH HOH . J 3 HOH A 7 307 1 HOH HOH . J 3 HOH A 8 308 145 HOH HOH . J 3 HOH A 9 309 15 HOH HOH . J 3 HOH A 10 310 42 HOH HOH . J 3 HOH A 11 311 204 HOH HOH . J 3 HOH A 12 312 67 HOH HOH . J 3 HOH A 13 313 79 HOH HOH . J 3 HOH A 14 314 21 HOH HOH . J 3 HOH A 15 315 23 HOH HOH . J 3 HOH A 16 316 120 HOH HOH . J 3 HOH A 17 317 122 HOH HOH . J 3 HOH A 18 318 19 HOH HOH . J 3 HOH A 19 319 163 HOH HOH . J 3 HOH A 20 320 222 HOH HOH . J 3 HOH A 21 321 183 HOH HOH . J 3 HOH A 22 322 70 HOH HOH . J 3 HOH A 23 323 155 HOH HOH . J 3 HOH A 24 324 40 HOH HOH . J 3 HOH A 25 325 235 HOH HOH . J 3 HOH A 26 326 169 HOH HOH . J 3 HOH A 27 327 20 HOH HOH . J 3 HOH A 28 328 201 HOH HOH . J 3 HOH A 29 329 130 HOH HOH . J 3 HOH A 30 330 6 HOH HOH . J 3 HOH A 31 331 108 HOH HOH . J 3 HOH A 32 332 58 HOH HOH . J 3 HOH A 33 333 109 HOH HOH . J 3 HOH A 34 334 110 HOH HOH . J 3 HOH A 35 335 177 HOH HOH . J 3 HOH A 36 336 238 HOH HOH . J 3 HOH A 37 337 237 HOH HOH . J 3 HOH A 38 338 234 HOH HOH . J 3 HOH A 39 339 4 HOH HOH . J 3 HOH A 40 340 5 HOH HOH . J 3 HOH A 41 341 12 HOH HOH . J 3 HOH A 42 342 14 HOH HOH . J 3 HOH A 43 343 16 HOH HOH . J 3 HOH A 44 344 18 HOH HOH . J 3 HOH A 45 345 28 HOH HOH . J 3 HOH A 46 346 29 HOH HOH . J 3 HOH A 47 347 38 HOH HOH . J 3 HOH A 48 348 48 HOH HOH . J 3 HOH A 49 349 50 HOH HOH . J 3 HOH A 50 350 52 HOH HOH . J 3 HOH A 51 351 59 HOH HOH . J 3 HOH A 52 352 61 HOH HOH . J 3 HOH A 53 353 62 HOH HOH . J 3 HOH A 54 354 76 HOH HOH . J 3 HOH A 55 355 78 HOH HOH . J 3 HOH A 56 356 81 HOH HOH . J 3 HOH A 57 357 89 HOH HOH . J 3 HOH A 58 358 93 HOH HOH . J 3 HOH A 59 359 100 HOH HOH . J 3 HOH A 60 360 107 HOH HOH . J 3 HOH A 61 361 112 HOH HOH . J 3 HOH A 62 362 113 HOH HOH . J 3 HOH A 63 363 115 HOH HOH . J 3 HOH A 64 364 117 HOH HOH . J 3 HOH A 65 365 134 HOH HOH . J 3 HOH A 66 366 139 HOH HOH . J 3 HOH A 67 367 140 HOH HOH . J 3 HOH A 68 368 142 HOH HOH . J 3 HOH A 69 369 147 HOH HOH . J 3 HOH A 70 370 148 HOH HOH . J 3 HOH A 71 371 149 HOH HOH . J 3 HOH A 72 372 179 HOH HOH . J 3 HOH A 73 373 197 HOH HOH . J 3 HOH A 74 374 203 HOH HOH . J 3 HOH A 75 375 208 HOH HOH . J 3 HOH A 76 376 216 HOH HOH . J 3 HOH A 77 377 220 HOH HOH . J 3 HOH A 78 378 221 HOH HOH . J 3 HOH A 79 379 233 HOH HOH . J 3 HOH A 80 380 236 HOH HOH . J 3 HOH A 81 381 239 HOH HOH . J 3 HOH A 82 382 240 HOH HOH . K 3 HOH B 1 301 131 HOH HOH . K 3 HOH B 2 302 36 HOH HOH . K 3 HOH B 3 303 31 HOH HOH . K 3 HOH B 4 304 114 HOH HOH . K 3 HOH B 5 305 198 HOH HOH . K 3 HOH B 6 306 64 HOH HOH . K 3 HOH B 7 307 121 HOH HOH . K 3 HOH B 8 308 85 HOH HOH . K 3 HOH B 9 309 135 HOH HOH . K 3 HOH B 10 310 37 HOH HOH . K 3 HOH B 11 311 230 HOH HOH . K 3 HOH B 12 312 153 HOH HOH . K 3 HOH B 13 313 218 HOH HOH . K 3 HOH B 14 314 152 HOH HOH . K 3 HOH B 15 315 71 HOH HOH . K 3 HOH B 16 316 24 HOH HOH . K 3 HOH B 17 317 192 HOH HOH . K 3 HOH B 18 318 17 HOH HOH . K 3 HOH B 19 319 196 HOH HOH . K 3 HOH B 20 320 215 HOH HOH . K 3 HOH B 21 321 158 HOH HOH . K 3 HOH B 22 322 22 HOH HOH . K 3 HOH B 23 323 171 HOH HOH . K 3 HOH B 24 324 186 HOH HOH . K 3 HOH B 25 325 57 HOH HOH . K 3 HOH B 26 326 43 HOH HOH . K 3 HOH B 27 327 150 HOH HOH . K 3 HOH B 28 328 82 HOH HOH . K 3 HOH B 29 329 225 HOH HOH . K 3 HOH B 30 330 33 HOH HOH . K 3 HOH B 31 331 232 HOH HOH . K 3 HOH B 32 332 3 HOH HOH . K 3 HOH B 33 333 7 HOH HOH . K 3 HOH B 34 334 8 HOH HOH . K 3 HOH B 35 335 10 HOH HOH . K 3 HOH B 36 336 25 HOH HOH . K 3 HOH B 37 337 27 HOH HOH . K 3 HOH B 38 338 39 HOH HOH . K 3 HOH B 39 339 46 HOH HOH . K 3 HOH B 40 340 51 HOH HOH . K 3 HOH B 41 341 53 HOH HOH . K 3 HOH B 42 342 56 HOH HOH . K 3 HOH B 43 343 68 HOH HOH . K 3 HOH B 44 344 83 HOH HOH . K 3 HOH B 45 345 90 HOH HOH . K 3 HOH B 46 346 95 HOH HOH . K 3 HOH B 47 347 104 HOH HOH . K 3 HOH B 48 348 111 HOH HOH . K 3 HOH B 49 349 116 HOH HOH . K 3 HOH B 50 350 118 HOH HOH . K 3 HOH B 51 351 119 HOH HOH . K 3 HOH B 52 352 132 HOH HOH . K 3 HOH B 53 353 137 HOH HOH . K 3 HOH B 54 354 138 HOH HOH . K 3 HOH B 55 355 143 HOH HOH . K 3 HOH B 56 356 151 HOH HOH . K 3 HOH B 57 357 154 HOH HOH . K 3 HOH B 58 358 160 HOH HOH . K 3 HOH B 59 359 161 HOH HOH . K 3 HOH B 60 360 164 HOH HOH . K 3 HOH B 61 361 165 HOH HOH . K 3 HOH B 62 362 166 HOH HOH . K 3 HOH B 63 363 167 HOH HOH . K 3 HOH B 64 364 168 HOH HOH . K 3 HOH B 65 365 170 HOH HOH . K 3 HOH B 66 366 172 HOH HOH . K 3 HOH B 67 367 173 HOH HOH . K 3 HOH B 68 368 176 HOH HOH . K 3 HOH B 69 369 180 HOH HOH . K 3 HOH B 70 370 195 HOH HOH . K 3 HOH B 71 371 199 HOH HOH . K 3 HOH B 72 372 200 HOH HOH . K 3 HOH B 73 373 202 HOH HOH . K 3 HOH B 74 374 206 HOH HOH . K 3 HOH B 75 375 209 HOH HOH . K 3 HOH B 76 376 211 HOH HOH . K 3 HOH B 77 377 213 HOH HOH . K 3 HOH B 78 378 226 HOH HOH . K 3 HOH B 79 379 227 HOH HOH . K 3 HOH B 80 380 228 HOH HOH . K 3 HOH B 81 381 229 HOH HOH . K 3 HOH B 82 382 231 HOH HOH . K 3 HOH B 83 383 241 HOH HOH . K 3 HOH B 84 384 242 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.709 _atom_site.Cartn_y -24.14 _atom_site.Cartn_z 15.926 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #