data_4U9D
#
_model_server_result.job_id            E5pV9dtrT6Vadc4D2SkR8A 
_model_server_result.datetime_utc      '2024-11-12 20:59:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u9d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":202}' 
#
_entry.id    4U9D 
#
_exptl.entry_id    4U9D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4U9D 
_cell.length_a            54.83 
_cell.length_b            54.83 
_cell.length_c            237.82 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U9D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 B SG CYS 96 B CYS 96 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A SG CYS 98 A CYS 98 1_555 E CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? 
covale ? covale2 A SG CYS 101 A CYS 101 1_555 E CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? 
covale ? covale3 B SG CYS 98 B CYS 98 1_555 K CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? 
covale ? covale4 B SG CYS 101 B CYS 101 1_555 K CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? 
covale ? covale5 C SG CYS 98 C CYS 98 1_555 O CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.619 ? 
covale ? covale6 C SG CYS 101 C CYS 101 1_555 O CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? 
covale ? covale7 D SG CYS 98 D CYS 98 1_555 P CAB HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? 
covale ? covale8 D SG CYS 101 D CYS 101 1_555 P CAC HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? 
metalc ? metalc1 A SD MET 7 A MET 7 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc2 A NE2 HIS 63 A HIS 63 1_555 J ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc3 A NE2 HIS 73 A HIS 73 1_555 G ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc4 A OD1 ASP 74 A ASP 74 1_555 H ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc5 A OD2 ASP 74 A ASP 74 1_555 H ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc6 A NE2 HIS 77 A HIS 77 1_555 G ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc7 A OE1 GLU 86 A GLU 86 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc8 A ND1 HIS 89 A HIS 89 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc9 A NE2 HIS 100 A HIS 100 1_555 I ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc10 A NE2 HIS 102 A HIS 102 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc11 F ZN ZN . A ZN 202 1_555 C NE2 HIS 100 C HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc12 F ZN ZN . A ZN 202 1_555 C NZ LYS 104 C LYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc13 G ZN ZN . A ZN 203 1_555 B OD1 ASP 74 B ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc14 G ZN ZN . A ZN 203 1_555 D NE2 HIS 63 D HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc15 H ZN ZN . A ZN 204 1_555 B NE2 HIS 73 B HIS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc16 H ZN ZN . A ZN 204 1_555 B NE2 HIS 77 B HIS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc17 H ZN ZN . A ZN 204 1_555 C NE2 HIS 63 C HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc18 I ZN ZN . A ZN 205 1_555 C OE1 GLU 86 C GLU 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc19 I ZN ZN . A ZN 205 1_555 C OE2 GLU 86 C GLU 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc20 I ZN ZN . A ZN 205 1_555 C ND1 HIS 89 C HIS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? 
metalc ? metalc21 J ZN ZN . A ZN 206 1_555 C OD1 ASP 74 C ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc22 J ZN ZN . A ZN 206 1_555 C OD2 ASP 74 C ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc23 J ZN ZN . A ZN 206 1_555 D NE2 HIS 73 D HIS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc24 J ZN ZN . A ZN 206 1_555 D NE2 HIS 77 D HIS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc25 B SD MET 7 B MET 7 1_555 K FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc26 B NE2 HIS 63 B HIS 63 1_555 M ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc27 B OE1 GLU 86 B GLU 86 1_555 L ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc28 B OE2 GLU 86 B GLU 86 1_555 L ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? 
metalc ? metalc29 B ND1 HIS 89 B HIS 89 1_555 L ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc30 B NE2 HIS 100 B HIS 100 1_555 N ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc31 B NE2 HIS 102 B HIS 102 1_555 K FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc32 B NZ LYS 104 B LYS 104 1_555 N ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc33 L ZN ZN . B ZN 202 1_555 D NE2 HIS 100 D HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc34 M ZN ZN . B ZN 203 1_555 C NE2 HIS 73 C HIS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc35 M ZN ZN . B ZN 203 1_555 C NE2 HIS 77 C HIS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc36 M ZN ZN . B ZN 203 1_555 D OD1 ASP 74 D ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? 
metalc ? metalc37 M ZN ZN . B ZN 203 1_555 D OD2 ASP 74 D ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc38 C SD MET 7 C MET 7 1_555 O FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc39 C NE2 HIS 102 C HIS 102 1_555 O FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc40 D SD MET 7 D MET 7 1_555 P FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc41 D NE2 HIS 102 D HIS 102 1_555 P FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4U9D 
_atom_sites.fract_transf_matrix[1][1]    0.018238 
_atom_sites.fract_transf_matrix[1][2]    0.01053 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02106 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004205 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEC A 1 201 150 HEC HEM . 
F 3 ZN A 1 202 1 ZN ZN . 
G 3 ZN A 1 203 6 ZN ZN . 
H 3 ZN A 1 204 5 ZN ZN . 
I 3 ZN A 1 205 2 ZN ZN . 
J 3 ZN A 1 206 3 ZN ZN . 
K 2 HEC B 1 201 150 HEC HEM . 
L 3 ZN B 1 202 8 ZN ZN . 
M 3 ZN B 1 203 4 ZN ZN . 
N 3 ZN B 1 204 7 ZN ZN . 
O 2 HEC C 1 201 150 HEC HEM . 
P 2 HEC D 1 201 150 HEC HEM . 
Q 4 HOH A 1 301 10 HOH HOH . 
Q 4 HOH A 2 302 5 HOH HOH . 
Q 4 HOH A 3 303 34 HOH HOH . 
Q 4 HOH A 4 304 22 HOH HOH . 
Q 4 HOH A 5 305 31 HOH HOH . 
Q 4 HOH A 6 306 9 HOH HOH . 
Q 4 HOH A 7 307 35 HOH HOH . 
Q 4 HOH A 8 308 28 HOH HOH . 
Q 4 HOH A 9 309 4 HOH HOH . 
Q 4 HOH A 10 310 19 HOH HOH . 
Q 4 HOH A 11 311 26 HOH HOH . 
Q 4 HOH A 12 312 29 HOH HOH . 
Q 4 HOH A 13 313 33 HOH HOH . 
R 4 HOH B 1 301 18 HOH HOH . 
R 4 HOH B 2 302 7 HOH HOH . 
R 4 HOH B 3 303 11 HOH HOH . 
R 4 HOH B 4 304 14 HOH HOH . 
R 4 HOH B 5 305 20 HOH HOH . 
R 4 HOH B 6 306 21 HOH HOH . 
R 4 HOH B 7 307 27 HOH HOH . 
R 4 HOH B 8 308 37 HOH HOH . 
S 4 HOH C 1 301 25 HOH HOH . 
S 4 HOH C 2 302 1 HOH HOH . 
S 4 HOH C 3 303 36 HOH HOH . 
S 4 HOH C 4 304 2 HOH HOH . 
S 4 HOH C 5 305 6 HOH HOH . 
S 4 HOH C 6 306 12 HOH HOH . 
S 4 HOH C 7 307 15 HOH HOH . 
S 4 HOH C 8 308 16 HOH HOH . 
S 4 HOH C 9 309 17 HOH HOH . 
S 4 HOH C 10 310 23 HOH HOH . 
S 4 HOH C 11 311 24 HOH HOH . 
S 4 HOH C 12 312 30 HOH HOH . 
S 4 HOH C 13 313 38 HOH HOH . 
T 4 HOH D 1 301 3 HOH HOH . 
T 4 HOH D 2 302 32 HOH HOH . 
T 4 HOH D 3 303 8 HOH HOH . 
T 4 HOH D 4 304 13 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               24.849 
_atom_site.Cartn_y               21.48 
_atom_site.Cartn_z               -13.082 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        100 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#