data_4U9E # _model_server_result.job_id iir3vXCfzQ1BphnjBHBXCg _model_server_result.datetime_utc '2024-10-28 02:24:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4U9E # _exptl.entry_id 4U9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U9E _cell.length_a 71.313 _cell.length_b 92.213 _cell.length_c 98.599 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 46.1065 49.2995 3 'crystal symmetry operation' 11_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 35.6565 0 49.2995 4 'crystal symmetry operation' 14_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 35.6565 46.1065 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 A SG CYS 96 A CYS 96 14_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? covale ? covale1 A SG CYS 98 A CYS 98 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.653 ? metalc ? metalc1 A OE1 GLU 4 A GLU 4 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc2 A OD1 ASP 5 A ASP 5 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc3 A OD1 ASP 5 A ASP 5 1_555 C CA CA . A CA 202 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc4 A OD1 ASP 5 A ASP 5 1_555 E CA CA . A CA 204 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc5 A SD MET 7 A MET 7 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc6 A OE1 GLU 8 A GLU 8 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc7 A OE2 GLU 8 A GLU 8 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc8 A OE1 GLU 8 A GLU 8 1_555 C CA CA . A CA 202 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc9 A OE2 GLU 8 A GLU 8 1_555 C CA CA . A CA 202 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc10 A OE1 GLU 8 A GLU 8 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc11 A OE2 GLU 8 A GLU 8 1_555 G CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc12 A OE2 GLU 8 A GLU 8 1_555 G CA CA . A CA 206 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc13 A O LYS 19 A LYS 19 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc14 A O LYS 19 A LYS 19 1_555 D CA CA . A CA 203 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc15 A OD1 ASP 21 A ASP 21 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc16 A OD1 ASP 21 A ASP 21 1_555 D CA CA . A CA 203 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc17 A ND1 HIS 63 A HIS 63 1_555 H ZN ZN . A ZN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc18 A NE2 HIS 73 A HIS 73 1_555 H ZN ZN . A ZN 207 11_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc19 A NE2 HIS 77 A HIS 77 1_555 H ZN ZN . A ZN 207 11_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc20 A OE1 GLU 86 A GLU 86 1_555 I ZN ZN . A ZN 208 14_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc21 A OE2 GLU 86 A GLU 86 1_555 I ZN ZN . A ZN 208 14_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc22 A ND1 HIS 89 A HIS 89 1_555 I ZN ZN . A ZN 208 14_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc23 A NE2 HIS 100 A HIS 100 1_555 I ZN ZN . A ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc24 A NE2 HIS 102 A HIS 102 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc25 B O1A HEC . A HEC 201 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc26 D CA CA . A CA 203 1_555 J O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc27 D CA CA . A CA 203 1_555 J O HOH . A HOH 319 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc28 E CA CA . A CA 204 1_555 J O HOH . A HOH 301 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc29 E CA CA . A CA 204 1_555 J O HOH . A HOH 316 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc30 E CA CA . A CA 204 1_555 J O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc31 G CA CA . A CA 206 1_555 J O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc32 G CA CA . A CA 206 1_555 J O HOH . A HOH 311 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc33 H ZN ZN . A ZN 207 1_555 J O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc34 I ZN ZN . A ZN 208 1_555 J O HOH . A HOH 318 14_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4U9E _atom_sites.fract_transf_matrix[1][1] 0.014023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 150 HEC HEM . C 3 CA A 1 202 1 CA CA . D 3 CA A 1 203 2 CA CA . E 3 CA A 1 204 3 CA CA . F 3 CA A 1 205 4 CA CA . G 3 CA A 1 206 5 CA CA . H 4 ZN A 1 207 1 ZN ZN . I 4 ZN A 1 208 2 ZN ZN . J 5 HOH A 1 301 87 HOH HOH . J 5 HOH A 2 302 82 HOH HOH . J 5 HOH A 3 303 5 HOH HOH . J 5 HOH A 4 304 9 HOH HOH . J 5 HOH A 5 305 58 HOH HOH . J 5 HOH A 6 306 28 HOH HOH . J 5 HOH A 7 307 2 HOH HOH . J 5 HOH A 8 308 27 HOH HOH . J 5 HOH A 9 309 40 HOH HOH . J 5 HOH A 10 310 64 HOH HOH . J 5 HOH A 11 311 13 HOH HOH . J 5 HOH A 12 312 63 HOH HOH . J 5 HOH A 13 313 85 HOH HOH . J 5 HOH A 14 314 24 HOH HOH . J 5 HOH A 15 315 42 HOH HOH . J 5 HOH A 16 316 68 HOH HOH . J 5 HOH A 17 317 47 HOH HOH . J 5 HOH A 18 318 4 HOH HOH . J 5 HOH A 19 319 31 HOH HOH . J 5 HOH A 20 320 25 HOH HOH . J 5 HOH A 21 321 43 HOH HOH . J 5 HOH A 22 322 66 HOH HOH . J 5 HOH A 23 323 71 HOH HOH . J 5 HOH A 24 324 80 HOH HOH . J 5 HOH A 25 325 54 HOH HOH . J 5 HOH A 26 326 33 HOH HOH . J 5 HOH A 27 327 16 HOH HOH . J 5 HOH A 28 328 8 HOH HOH . J 5 HOH A 29 329 55 HOH HOH . J 5 HOH A 30 330 75 HOH HOH . J 5 HOH A 31 331 72 HOH HOH . J 5 HOH A 32 332 3 HOH HOH . J 5 HOH A 33 333 45 HOH HOH . J 5 HOH A 34 334 60 HOH HOH . J 5 HOH A 35 335 1 HOH HOH . J 5 HOH A 36 336 6 HOH HOH . J 5 HOH A 37 337 7 HOH HOH . J 5 HOH A 38 338 10 HOH HOH . J 5 HOH A 39 339 11 HOH HOH . J 5 HOH A 40 340 12 HOH HOH . J 5 HOH A 41 341 14 HOH HOH . J 5 HOH A 42 342 15 HOH HOH . J 5 HOH A 43 343 17 HOH HOH . J 5 HOH A 44 344 18 HOH HOH . J 5 HOH A 45 345 19 HOH HOH . J 5 HOH A 46 346 20 HOH HOH . J 5 HOH A 47 347 21 HOH HOH . J 5 HOH A 48 348 22 HOH HOH . J 5 HOH A 49 349 23 HOH HOH . J 5 HOH A 50 350 26 HOH HOH . J 5 HOH A 51 351 29 HOH HOH . J 5 HOH A 52 352 30 HOH HOH . J 5 HOH A 53 353 32 HOH HOH . J 5 HOH A 54 354 34 HOH HOH . J 5 HOH A 55 355 35 HOH HOH . J 5 HOH A 56 356 36 HOH HOH . J 5 HOH A 57 357 37 HOH HOH . J 5 HOH A 58 358 38 HOH HOH . J 5 HOH A 59 359 39 HOH HOH . J 5 HOH A 60 360 41 HOH HOH . J 5 HOH A 61 361 44 HOH HOH . J 5 HOH A 62 362 46 HOH HOH . J 5 HOH A 63 363 48 HOH HOH . J 5 HOH A 64 364 49 HOH HOH . J 5 HOH A 65 365 50 HOH HOH . J 5 HOH A 66 366 51 HOH HOH . J 5 HOH A 67 367 52 HOH HOH . J 5 HOH A 68 368 53 HOH HOH . J 5 HOH A 69 369 56 HOH HOH . J 5 HOH A 70 370 57 HOH HOH . J 5 HOH A 71 371 59 HOH HOH . J 5 HOH A 72 372 61 HOH HOH . J 5 HOH A 73 373 62 HOH HOH . J 5 HOH A 74 374 65 HOH HOH . J 5 HOH A 75 375 67 HOH HOH . J 5 HOH A 76 376 69 HOH HOH . J 5 HOH A 77 377 70 HOH HOH . J 5 HOH A 78 378 73 HOH HOH . J 5 HOH A 79 379 74 HOH HOH . J 5 HOH A 80 380 76 HOH HOH . J 5 HOH A 81 381 77 HOH HOH . J 5 HOH A 82 382 78 HOH HOH . J 5 HOH A 83 383 79 HOH HOH . J 5 HOH A 84 384 81 HOH HOH . J 5 HOH A 85 385 83 HOH HOH . J 5 HOH A 86 386 84 HOH HOH . J 5 HOH A 87 387 86 HOH HOH . J 5 HOH A 88 388 88 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 0 _atom_site.Cartn_y 11.221 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 60.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #