data_4U9L # _model_server_result.job_id HZuIzLOQskcRSxysTI5FVQ _model_server_result.datetime_utc '2025-07-05 04:53:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 4U9L # _exptl.entry_id 4U9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U9L _cell.length_a 62.529 _cell.length_b 70.165 _cell.length_c 102.644 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 501 1_555 I O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc2 C MG MG . A MG 501 1_555 I O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc3 C MG MG . A MG 501 1_555 I O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc4 C MG MG . A MG 501 1_555 J O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc5 C MG MG . A MG 501 1_555 J O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc6 C MG MG . A MG 501 1_555 J O HOH . B HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 224 n n C10 C9 OLC doub 225 n n C10 C11 OLC sing 226 n n C9 C8 OLC sing 227 n n C17 C16 OLC sing 228 z n C11 C12 OLC sing 229 n n C8 C7 OLC sing 230 n n C24 C22 OLC sing 231 n n C24 O25 OLC sing 232 n n C16 C15 OLC sing 233 n n C12 C13 OLC sing 234 n n C7 C6 OLC sing 235 n n C15 C14 OLC sing 236 n n C13 C14 OLC sing 237 n n C6 C5 OLC sing 238 n n C5 C4 OLC sing 239 n n C4 C3 OLC sing 240 n n C3 C2 OLC sing 241 n n C2 C1 OLC sing 242 n n C21 C22 OLC sing 243 n n C21 O20 OLC sing 244 n n C1 O19 OLC doub 245 n n C1 O20 OLC sing 246 n n C22 O23 OLC sing 247 n n C18 H18 OLC sing 248 n n C18 H18A OLC sing 249 n n C18 H18B OLC sing 250 n n C10 H10 OLC sing 251 n n C9 H9 OLC sing 252 n n C17 H17 OLC sing 253 n n C17 H17A OLC sing 254 n n C11 H11 OLC sing 255 n n C11 H11A OLC sing 256 n n C8 H8 OLC sing 257 n n C8 H8A OLC sing 258 n n C24 H24 OLC sing 259 n n C24 H24A OLC sing 260 n n C16 H16 OLC sing 261 n n C16 H16A OLC sing 262 n n C12 H12 OLC sing 263 n n C12 H12A OLC sing 264 n n C7 H7 OLC sing 265 n n C7 H7A OLC sing 266 n n C15 H15 OLC sing 267 n n C15 H15A OLC sing 268 n n C13 H13 OLC sing 269 n n C13 H13A OLC sing 270 n n C6 H6 OLC sing 271 n n C6 H6A OLC sing 272 n n C14 H14 OLC sing 273 n n C14 H14A OLC sing 274 n n C5 H5 OLC sing 275 n n C5 H5A OLC sing 276 n n C4 H4 OLC sing 277 n n C4 H4A OLC sing 278 n n C3 H3 OLC sing 279 n n C3 H3A OLC sing 280 n n C2 H2 OLC sing 281 n n C2 H2A OLC sing 282 n n C21 H21 OLC sing 283 n n C21 H21A OLC sing 284 n n C22 H22 OLC sing 285 n n O25 HO25 OLC sing 286 n n O23 HO23 OLC sing 287 n n # _atom_sites.entry_id 4U9L _atom_sites.fract_transf_matrix[1][1] 0.015993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 1 MG MG . D 3 OLC A 1 502 1 OLC OLC . E 3 OLC A 1 503 4 OLC OLC . F 3 OLC A 1 504 6 OLC OLC . G 3 OLC B 1 501 3 OLC OLC . H 3 OLC B 1 502 5 OLC OLC . I 4 HOH A 1 601 91 HOH HOH . I 4 HOH A 2 602 97 HOH HOH . I 4 HOH A 3 603 92 HOH HOH . I 4 HOH A 4 604 90 HOH HOH . I 4 HOH A 5 605 2 HOH HOH . I 4 HOH A 6 606 5 HOH HOH . I 4 HOH A 7 607 6 HOH HOH . I 4 HOH A 8 608 7 HOH HOH . I 4 HOH A 9 609 11 HOH HOH . I 4 HOH A 10 610 13 HOH HOH . I 4 HOH A 11 611 14 HOH HOH . I 4 HOH A 12 612 17 HOH HOH . I 4 HOH A 13 613 20 HOH HOH . I 4 HOH A 14 614 72 HOH HOH . I 4 HOH A 15 615 85 HOH HOH . I 4 HOH A 16 616 93 HOH HOH . I 4 HOH A 17 617 94 HOH HOH . I 4 HOH A 18 618 95 HOH HOH . I 4 HOH A 19 619 96 HOH HOH . I 4 HOH A 20 620 101 HOH HOH . I 4 HOH A 21 621 102 HOH HOH . I 4 HOH A 22 622 106 HOH HOH . J 4 HOH B 1 601 89 HOH HOH . J 4 HOH B 2 602 87 HOH HOH . J 4 HOH B 3 603 98 HOH HOH . J 4 HOH B 4 604 99 HOH HOH . J 4 HOH B 5 605 1 HOH HOH . J 4 HOH B 6 606 3 HOH HOH . J 4 HOH B 7 607 4 HOH HOH . J 4 HOH B 8 608 8 HOH HOH . J 4 HOH B 9 609 9 HOH HOH . J 4 HOH B 10 610 16 HOH HOH . J 4 HOH B 11 611 76 HOH HOH . J 4 HOH B 12 612 84 HOH HOH . J 4 HOH B 13 613 86 HOH HOH . J 4 HOH B 14 614 100 HOH HOH . J 4 HOH B 15 615 103 HOH HOH . J 4 HOH B 16 616 104 HOH HOH . J 4 HOH B 17 617 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . F 3 5.411 -10.318 12.129 1 63.49 ? C18 OLC 504 A 1 HETATM 2 C C10 OLC . . . F 3 10.09 -14.733 5.25 1 67.63 ? C10 OLC 504 A 1 HETATM 3 C C9 OLC . . . F 3 11.578 -14.805 5.3 1 60.7 ? C9 OLC 504 A 1 HETATM 4 C C17 OLC . . . F 3 6.548 -10.718 11.247 1 70.15 ? C17 OLC 504 A 1 HETATM 5 C C11 OLC . . . F 3 9.304 -14.794 6.518 1 68.33 ? C11 OLC 504 A 1 HETATM 6 C C8 OLC . . . F 3 12.27 -14.658 6.611 1 60.89 ? C8 OLC 504 A 1 HETATM 7 C C16 OLC . . . F 3 6.055 -10.994 9.865 1 68.29 ? C16 OLC 504 A 1 HETATM 8 C C12 OLC . . . F 3 8.198 -13.789 6.485 1 67.28 ? C12 OLC 504 A 1 HETATM 9 C C7 OLC . . . F 3 13.673 -15.163 6.528 1 59.56 ? C7 OLC 504 A 1 HETATM 10 C C15 OLC . . . F 3 6.414 -12.394 9.488 1 68.01 ? C15 OLC 504 A 1 HETATM 11 C C13 OLC . . . F 3 7.464 -13.798 7.785 1 67.93 ? C13 OLC 504 A 1 HETATM 12 C C6 OLC . . . F 3 14.232 -15.254 7.909 1 58.77 ? C6 OLC 504 A 1 HETATM 13 C C14 OLC . . . F 3 6.93 -12.437 8.087 1 67.62 ? C14 OLC 504 A 1 HETATM 14 C C5 OLC . . . F 3 15.472 -16.08 7.921 1 58.29 ? C5 OLC 504 A 1 HETATM 15 C C4 OLC . . . F 3 15.563 -16.805 9.223 1 67.7 ? C4 OLC 504 A 1 HETATM 16 C C3 OLC . . . F 3 16.818 -17.614 9.276 1 76.28 ? C3 OLC 504 A 1 HETATM 17 C C2 OLC . . . F 3 17.993 -16.697 9.378 1 80.22 ? C2 OLC 504 A 1 HETATM 18 C C1 OLC . . . F 3 19.16 -17.437 9.94 1 80.22 ? C1 OLC 504 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #