data_4U9N
#
_model_server_result.job_id            TUJXwIUxxnW2DaWFQSXOZw 
_model_server_result.datetime_utc      '2024-10-15 11:28:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u9n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":506}' 
#
_entry.id    4U9N 
#
_exptl.entry_id    4U9N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4U9N 
_cell.length_a            63.521 
_cell.length_b            70.681 
_cell.length_c            103.327 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U9N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 41 A GLU 311 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc2 A OE2 GLU 41 A GLU 311 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc3 C MN MN . A MN 501 1_555 N O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc4 C MN MN . A MN 501 1_555 N O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc5 C MN MN . A MN 501 1_555 N O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc6 C MN MN . A MN 501 1_555 O O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc7 C MN MN . A MN 501 1_555 O O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc8 C MN MN . A MN 501 1_555 O O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc9 D MN MN . A MN 502 1_555 N O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc10 D MN MN . A MN 502 2_554 B OE2 GLU 5 B GLU 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc11 D MN MN . A MN 502 1_555 B O GLU 41 B GLU 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
metalc ? metalc12 N O HOH . A HOH 613 1_555 H MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc13 N O HOH . A HOH 614 1_555 H MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc14 B OE2 GLU 37 B GLU 307 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc15 B OE1 GLU 41 B GLU 311 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc16 B NE2 HIS 113 B HIS 383 1_555 H MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc17 H MN MN . B MN 501 1_555 O O HOH . B HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc18 H MN MN . B MN 501 1_555 O O HOH . B HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc19 I MN MN . B MN 502 1_555 O O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc20 I MN MN . B MN 502 1_555 O O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc21 I MN MN . B MN 502 1_555 O O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc22 I MN MN . B MN 502 1_555 O O HOH . B HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 277 n n 
C10 C9 OLC doub 278 n n 
C10 C11 OLC sing 279 n n 
C9 C8 OLC sing 280 n n 
C17 C16 OLC sing 281 z n 
C11 C12 OLC sing 282 n n 
C8 C7 OLC sing 283 n n 
C24 C22 OLC sing 284 n n 
C24 O25 OLC sing 285 n n 
C16 C15 OLC sing 286 n n 
C12 C13 OLC sing 287 n n 
C7 C6 OLC sing 288 n n 
C15 C14 OLC sing 289 n n 
C13 C14 OLC sing 290 n n 
C6 C5 OLC sing 291 n n 
C5 C4 OLC sing 292 n n 
C4 C3 OLC sing 293 n n 
C3 C2 OLC sing 294 n n 
C2 C1 OLC sing 295 n n 
C21 C22 OLC sing 296 n n 
C21 O20 OLC sing 297 n n 
C1 O19 OLC doub 298 n n 
C1 O20 OLC sing 299 n n 
C22 O23 OLC sing 300 n n 
C18 H18 OLC sing 301 n n 
C18 H18A OLC sing 302 n n 
C18 H18B OLC sing 303 n n 
C10 H10 OLC sing 304 n n 
C9 H9 OLC sing 305 n n 
C17 H17 OLC sing 306 n n 
C17 H17A OLC sing 307 n n 
C11 H11 OLC sing 308 n n 
C11 H11A OLC sing 309 n n 
C8 H8 OLC sing 310 n n 
C8 H8A OLC sing 311 n n 
C24 H24 OLC sing 312 n n 
C24 H24A OLC sing 313 n n 
C16 H16 OLC sing 314 n n 
C16 H16A OLC sing 315 n n 
C12 H12 OLC sing 316 n n 
C12 H12A OLC sing 317 n n 
C7 H7 OLC sing 318 n n 
C7 H7A OLC sing 319 n n 
C15 H15 OLC sing 320 n n 
C15 H15A OLC sing 321 n n 
C13 H13 OLC sing 322 n n 
C13 H13A OLC sing 323 n n 
C6 H6 OLC sing 324 n n 
C6 H6A OLC sing 325 n n 
C14 H14 OLC sing 326 n n 
C14 H14A OLC sing 327 n n 
C5 H5 OLC sing 328 n n 
C5 H5A OLC sing 329 n n 
C4 H4 OLC sing 330 n n 
C4 H4A OLC sing 331 n n 
C3 H3 OLC sing 332 n n 
C3 H3A OLC sing 333 n n 
C2 H2 OLC sing 334 n n 
C2 H2A OLC sing 335 n n 
C21 H21 OLC sing 336 n n 
C21 H21A OLC sing 337 n n 
C22 H22 OLC sing 338 n n 
O25 HO25 OLC sing 339 n n 
O23 HO23 OLC sing 340 n n 
#
_atom_sites.entry_id                     4U9N 
_atom_sites.fract_transf_matrix[1][1]    0.015743 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014148 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009678 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 501 101 MN MN . 
D 2 MN A 1 502 401 MN MN . 
E 3 OLA A 1 503 2 OLA OLA . 
F 4 OLC A 1 504 1 OLC OLC . 
G 4 OLC A 1 505 5 OLC OLC . 
H 2 MN B 1 501 201 MN MN . 
I 2 MN B 1 502 301 MN MN . 
J 3 OLA B 1 503 3 OLA OLA . 
K 4 OLC B 1 504 2 OLC OLC . 
L 4 OLC B 1 505 3 OLC OLC . 
M 4 OLC B 1 506 6 OLC OLC . 
N 5 HOH A 1 601 50 HOH HOH . 
N 5 HOH A 2 602 402 HOH HOH . 
N 5 HOH A 3 603 45 HOH HOH . 
N 5 HOH A 4 604 39 HOH HOH . 
N 5 HOH A 5 605 59 HOH HOH . 
N 5 HOH A 6 606 49 HOH HOH . 
N 5 HOH A 7 607 37 HOH HOH . 
N 5 HOH A 8 608 42 HOH HOH . 
N 5 HOH A 9 609 34 HOH HOH . 
N 5 HOH A 10 610 102 HOH HOH . 
N 5 HOH A 11 611 105 HOH HOH . 
N 5 HOH A 12 612 107 HOH HOH . 
N 5 HOH A 13 613 202 HOH HOH . 
N 5 HOH A 14 614 203 HOH HOH . 
N 5 HOH A 15 615 7 HOH HOH . 
N 5 HOH A 16 616 9 HOH HOH . 
N 5 HOH A 17 617 12 HOH HOH . 
N 5 HOH A 18 618 14 HOH HOH . 
N 5 HOH A 19 619 16 HOH HOH . 
N 5 HOH A 20 620 17 HOH HOH . 
N 5 HOH A 21 621 18 HOH HOH . 
N 5 HOH A 22 622 21 HOH HOH . 
N 5 HOH A 23 623 22 HOH HOH . 
N 5 HOH A 24 624 23 HOH HOH . 
N 5 HOH A 25 625 24 HOH HOH . 
N 5 HOH A 26 626 26 HOH HOH . 
N 5 HOH A 27 627 29 HOH HOH . 
N 5 HOH A 28 628 35 HOH HOH . 
N 5 HOH A 29 629 36 HOH HOH . 
N 5 HOH A 30 630 40 HOH HOH . 
N 5 HOH A 31 631 41 HOH HOH . 
N 5 HOH A 32 632 43 HOH HOH . 
N 5 HOH A 33 633 44 HOH HOH . 
N 5 HOH A 34 634 51 HOH HOH . 
N 5 HOH A 35 635 52 HOH HOH . 
N 5 HOH A 36 636 53 HOH HOH . 
N 5 HOH A 37 637 57 HOH HOH . 
N 5 HOH A 38 638 71 HOH HOH . 
N 5 HOH A 39 639 77 HOH HOH . 
N 5 HOH A 40 640 78 HOH HOH . 
N 5 HOH A 41 641 85 HOH HOH . 
N 5 HOH A 42 642 87 HOH HOH . 
N 5 HOH A 43 643 88 HOH HOH . 
N 5 HOH A 44 644 96 HOH HOH . 
N 5 HOH A 45 645 100 HOH HOH . 
O 5 HOH B 1 601 304 HOH HOH . 
O 5 HOH B 2 602 70 HOH HOH . 
O 5 HOH B 3 603 305 HOH HOH . 
O 5 HOH B 4 604 302 HOH HOH . 
O 5 HOH B 5 605 303 HOH HOH . 
O 5 HOH B 6 606 103 HOH HOH . 
O 5 HOH B 7 607 104 HOH HOH . 
O 5 HOH B 8 608 106 HOH HOH . 
O 5 HOH B 9 609 204 HOH HOH . 
O 5 HOH B 10 610 205 HOH HOH . 
O 5 HOH B 11 611 8 HOH HOH . 
O 5 HOH B 12 612 10 HOH HOH . 
O 5 HOH B 13 613 11 HOH HOH . 
O 5 HOH B 14 614 13 HOH HOH . 
O 5 HOH B 15 615 15 HOH HOH . 
O 5 HOH B 16 616 19 HOH HOH . 
O 5 HOH B 17 617 20 HOH HOH . 
O 5 HOH B 18 618 27 HOH HOH . 
O 5 HOH B 19 619 28 HOH HOH . 
O 5 HOH B 20 620 38 HOH HOH . 
O 5 HOH B 21 621 46 HOH HOH . 
O 5 HOH B 22 622 47 HOH HOH . 
O 5 HOH B 23 623 58 HOH HOH . 
O 5 HOH B 24 624 60 HOH HOH . 
O 5 HOH B 25 625 67 HOH HOH . 
O 5 HOH B 26 626 68 HOH HOH . 
O 5 HOH B 27 627 94 HOH HOH . 
O 5 HOH B 28 628 95 HOH HOH . 
O 5 HOH B 29 629 97 HOH HOH . 
O 5 HOH B 30 630 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . M 4 31.388 16.045 5.016 1 47.85 ? C10 OLC 506 B 1 
HETATM 2 C C9 OLC . . . M 4 30.874 15.857 6.404 1 48.04 ? C9 OLC 506 B 1 
HETATM 3 C C11 OLC . . . M 4 32.557 15.246 4.549 1 46.59 ? C11 OLC 506 B 1 
HETATM 4 C C8 OLC . . . M 4 29.876 16.822 6.948 1 52.55 ? C8 OLC 506 B 1 
HETATM 5 C C24 OLC . . . M 4 35.021 17.198 17.578 1 62.02 ? C24 OLC 506 B 1 
HETATM 6 C C12 OLC . . . M 4 33.007 15.761 3.224 1 48.01 ? C12 OLC 506 B 1 
HETATM 7 C C7 OLC . . . M 4 29.853 16.733 8.437 1 53.02 ? C7 OLC 506 B 1 
HETATM 8 C C6 OLC . . . M 4 31.191 17.108 8.981 1 53.74 ? C6 OLC 506 B 1 
HETATM 9 C C5 OLC . . . M 4 31.353 16.533 10.348 1 54.76 ? C5 OLC 506 B 1 
HETATM 10 C C4 OLC . . . M 4 31.022 17.56 11.377 1 57.92 ? C4 OLC 506 B 1 
HETATM 11 C C3 OLC . . . M 4 32.024 17.486 12.479 1 60.36 ? C3 OLC 506 B 1 
HETATM 12 C C2 OLC . . . M 4 31.602 18.362 13.611 1 62.74 ? C2 OLC 506 B 1 
HETATM 13 C C21 OLC . . . M 4 33.47 16.951 15.713 1 63.46 ? C21 OLC 506 B 1 
HETATM 14 C C1 OLC . . . M 4 32.802 18.81 14.376 1 60.15 ? C1 OLC 506 B 1 
HETATM 15 C C22 OLC . . . M 4 34.739 16.452 16.318 1 58.4 ? C22 OLC 506 B 1 
HETATM 16 O O19 OLC . . . M 4 32.92 19.987 14.683 1 59.24 ? O19 OLC 506 B 1 
HETATM 17 O O25 OLC . . . M 4 35.537 16.321 18.511 1 59.93 ? O25 OLC 506 B 1 
HETATM 18 O O23 OLC . . . M 4 34.625 15.11 16.603 1 59.95 ? O23 OLC 506 B 1 
HETATM 19 O O20 OLC . . . M 4 33.763 17.905 14.761 1 61.89 ? O20 OLC 506 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           19 
#