data_4U9P
#
_model_server_result.job_id            KokNmhehyJJtVsuZMX8R4A 
_model_server_result.datetime_utc      '2024-11-05 04:19:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u9p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    4U9P 
#
_exptl.entry_id    4U9P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4U9P 
_cell.length_a            64.76 
_cell.length_b            152.6 
_cell.length_c            153.11 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U9P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -76.555 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4U9P 
_atom_sites.fract_transf_matrix[1][1]    0.015442 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006553 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006531 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GOL B 1 301 1 GOL GOL . 
E 3 HOH A 1 301 35 HOH HOH . 
E 3 HOH A 2 302 93 HOH HOH . 
E 3 HOH A 3 303 108 HOH HOH . 
E 3 HOH A 4 304 52 HOH HOH . 
E 3 HOH A 5 305 95 HOH HOH . 
E 3 HOH A 6 306 34 HOH HOH . 
E 3 HOH A 7 307 48 HOH HOH . 
E 3 HOH A 8 308 104 HOH HOH . 
E 3 HOH A 9 309 92 HOH HOH . 
E 3 HOH A 10 310 28 HOH HOH . 
E 3 HOH A 11 311 44 HOH HOH . 
E 3 HOH A 12 312 25 HOH HOH . 
E 3 HOH A 13 313 18 HOH HOH . 
E 3 HOH A 14 314 24 HOH HOH . 
E 3 HOH A 15 315 62 HOH HOH . 
E 3 HOH A 16 316 19 HOH HOH . 
E 3 HOH A 17 317 75 HOH HOH . 
E 3 HOH A 18 318 65 HOH HOH . 
E 3 HOH A 19 319 86 HOH HOH . 
E 3 HOH A 20 320 2 HOH HOH . 
E 3 HOH A 21 321 3 HOH HOH . 
E 3 HOH A 22 322 4 HOH HOH . 
E 3 HOH A 23 323 5 HOH HOH . 
E 3 HOH A 24 324 7 HOH HOH . 
E 3 HOH A 25 325 8 HOH HOH . 
E 3 HOH A 26 326 10 HOH HOH . 
E 3 HOH A 27 327 11 HOH HOH . 
E 3 HOH A 28 328 12 HOH HOH . 
E 3 HOH A 29 329 17 HOH HOH . 
E 3 HOH A 30 330 20 HOH HOH . 
E 3 HOH A 31 331 21 HOH HOH . 
E 3 HOH A 32 332 27 HOH HOH . 
E 3 HOH A 33 333 37 HOH HOH . 
E 3 HOH A 34 334 38 HOH HOH . 
E 3 HOH A 35 335 43 HOH HOH . 
E 3 HOH A 36 336 54 HOH HOH . 
E 3 HOH A 37 337 55 HOH HOH . 
E 3 HOH A 38 338 56 HOH HOH . 
E 3 HOH A 39 339 57 HOH HOH . 
E 3 HOH A 40 340 60 HOH HOH . 
E 3 HOH A 41 341 76 HOH HOH . 
E 3 HOH A 42 342 78 HOH HOH . 
E 3 HOH A 43 343 96 HOH HOH . 
E 3 HOH A 44 344 99 HOH HOH . 
E 3 HOH A 45 345 100 HOH HOH . 
E 3 HOH A 46 346 101 HOH HOH . 
E 3 HOH A 47 347 107 HOH HOH . 
E 3 HOH A 48 348 111 HOH HOH . 
E 3 HOH A 49 349 113 HOH HOH . 
E 3 HOH A 50 350 118 HOH HOH . 
E 3 HOH A 51 351 122 HOH HOH . 
F 3 HOH B 1 401 1 HOH HOH . 
F 3 HOH B 2 402 6 HOH HOH . 
F 3 HOH B 3 403 9 HOH HOH . 
F 3 HOH B 4 404 13 HOH HOH . 
F 3 HOH B 5 405 22 HOH HOH . 
F 3 HOH B 6 406 23 HOH HOH . 
F 3 HOH B 7 407 26 HOH HOH . 
F 3 HOH B 8 408 29 HOH HOH . 
F 3 HOH B 9 409 30 HOH HOH . 
F 3 HOH B 10 410 32 HOH HOH . 
F 3 HOH B 11 411 33 HOH HOH . 
F 3 HOH B 12 412 39 HOH HOH . 
F 3 HOH B 13 413 41 HOH HOH . 
F 3 HOH B 14 414 42 HOH HOH . 
F 3 HOH B 15 415 46 HOH HOH . 
F 3 HOH B 16 416 58 HOH HOH . 
F 3 HOH B 17 417 63 HOH HOH . 
F 3 HOH B 18 418 64 HOH HOH . 
F 3 HOH B 19 419 66 HOH HOH . 
F 3 HOH B 20 420 69 HOH HOH . 
F 3 HOH B 21 421 70 HOH HOH . 
F 3 HOH B 22 422 73 HOH HOH . 
F 3 HOH B 23 423 79 HOH HOH . 
F 3 HOH B 24 424 80 HOH HOH . 
F 3 HOH B 25 425 85 HOH HOH . 
F 3 HOH B 26 426 88 HOH HOH . 
F 3 HOH B 27 427 89 HOH HOH . 
F 3 HOH B 28 428 90 HOH HOH . 
F 3 HOH B 29 429 97 HOH HOH . 
F 3 HOH B 30 430 103 HOH HOH . 
F 3 HOH B 31 431 105 HOH HOH . 
F 3 HOH B 32 432 106 HOH HOH . 
F 3 HOH B 33 433 109 HOH HOH . 
F 3 HOH B 34 434 114 HOH HOH . 
F 3 HOH B 35 435 115 HOH HOH . 
F 3 HOH B 36 436 121 HOH HOH . 
G 3 HOH C 1 301 16 HOH HOH . 
G 3 HOH C 2 302 87 HOH HOH . 
G 3 HOH C 3 303 49 HOH HOH . 
G 3 HOH C 4 304 110 HOH HOH . 
G 3 HOH C 5 305 14 HOH HOH . 
G 3 HOH C 6 306 82 HOH HOH . 
G 3 HOH C 7 307 94 HOH HOH . 
G 3 HOH C 8 308 120 HOH HOH . 
G 3 HOH C 9 309 47 HOH HOH . 
G 3 HOH C 10 310 15 HOH HOH . 
G 3 HOH C 11 311 31 HOH HOH . 
G 3 HOH C 12 312 36 HOH HOH . 
G 3 HOH C 13 313 40 HOH HOH . 
G 3 HOH C 14 314 45 HOH HOH . 
G 3 HOH C 15 315 50 HOH HOH . 
G 3 HOH C 16 316 51 HOH HOH . 
G 3 HOH C 17 317 53 HOH HOH . 
G 3 HOH C 18 318 59 HOH HOH . 
G 3 HOH C 19 319 61 HOH HOH . 
G 3 HOH C 20 320 67 HOH HOH . 
G 3 HOH C 21 321 68 HOH HOH . 
G 3 HOH C 22 322 71 HOH HOH . 
G 3 HOH C 23 323 72 HOH HOH . 
G 3 HOH C 24 324 74 HOH HOH . 
G 3 HOH C 25 325 77 HOH HOH . 
G 3 HOH C 26 326 81 HOH HOH . 
G 3 HOH C 27 327 83 HOH HOH . 
G 3 HOH C 28 328 84 HOH HOH . 
G 3 HOH C 29 329 91 HOH HOH . 
G 3 HOH C 30 330 98 HOH HOH . 
G 3 HOH C 31 331 102 HOH HOH . 
G 3 HOH C 32 332 112 HOH HOH . 
G 3 HOH C 33 333 116 HOH HOH . 
G 3 HOH C 34 334 117 HOH HOH . 
G 3 HOH C 35 335 119 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 -29.365 19.043 -29.093 1 47.7 ? C1 GOL 301 B 1 
HETATM 2 O O1 GOL . . . D 2 -30.047 17.964 -29.73 1 49.42 ? O1 GOL 301 B 1 
HETATM 3 C C2 GOL . . . D 2 -28.412 18.556 -28.023 1 45.52 ? C2 GOL 301 B 1 
HETATM 4 O O2 GOL . . . D 2 -29.121 17.813 -27.034 1 44.04 ? O2 GOL 301 B 1 
HETATM 5 C C3 GOL . . . D 2 -27.325 17.686 -28.6 1 44.99 ? C3 GOL 301 B 1 
HETATM 6 O O3 GOL . . . D 2 -26.723 16.901 -27.578 1 39.88 ? O3 GOL 301 B 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#