data_4U9R # _model_server_result.job_id B4p5a3L70oPh6nv5VUrrMQ _model_server_result.datetime_utc '2025-04-19 00:59:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4U9R # _exptl.entry_id 4U9R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.186 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,3',3''-phosphanetriyltripropanoic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U9R _cell.length_a 58.16 _cell.length_b 58.16 _cell.length_c 72.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 42 A ASP 42 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 A SG CYS 44 A CYS 44 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc3 A NE2 HIS 62 A HIS 62 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc4 A SG CYS 75 A CYS 75 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc5 A NE2 HIS 77 A HIS 77 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc6 A NE2 HIS 105 A HIS 105 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc7 A OE1 GLU 146 A GLU 146 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc8 A OE2 GLU 146 A GLU 146 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? # _chem_comp.formula 'C9 H15 O6 P' _chem_comp.formula_weight 250.186 _chem_comp.id TCE _chem_comp.mon_nstd_flag . _chem_comp.name "3,3',3''-phosphanetriyltripropanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-[bis(2-carboxyethyl)phosphanyl]propanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C14 TCE doub 290 n n C14 O15 TCE sing 291 n n C14 C5 TCE sing 292 n n O15 HO15 TCE sing 293 n n C2 C5 TCE sing 294 n n C5 H5 TCE sing 295 n n C5 H5A TCE sing 296 n n C2 P TCE sing 297 n n C2 H2 TCE sing 298 n n C2 H2A TCE sing 299 n n C1 P TCE sing 300 n n P C3 TCE sing 301 n n C3 C6 TCE sing 302 n n C3 H3 TCE sing 303 n n C3 H3A TCE sing 304 n n C6 C8 TCE sing 305 n n C6 H6 TCE sing 306 n n C6 H6A TCE sing 307 n n O10 C8 TCE doub 308 n n C8 O9 TCE sing 309 n n O9 HO9 TCE sing 310 n n C4 C1 TCE sing 311 n n C1 H1 TCE sing 312 n n C1 H1A TCE sing 313 n n C11 C4 TCE sing 314 n n C4 H4 TCE sing 315 n n C4 H4A TCE sing 316 n n O13 C11 TCE doub 317 n n O12 C11 TCE sing 318 n n O12 HO12 TCE sing 319 n n # _atom_sites.entry_id 4U9R _atom_sites.fract_transf_matrix[1][1] 0.017194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 301 1 CD CD . C 2 CD A 1 302 2 CD CD . D 3 TCE A 1 303 1 TCE TCP . E 4 HOH A 1 401 10 HOH HOH . E 4 HOH A 2 402 3 HOH HOH . E 4 HOH A 3 403 2 HOH HOH . E 4 HOH A 4 404 7 HOH HOH . E 4 HOH A 5 405 5 HOH HOH . E 4 HOH A 6 406 9 HOH HOH . E 4 HOH A 7 407 11 HOH HOH . E 4 HOH A 8 408 1 HOH HOH . E 4 HOH A 9 409 4 HOH HOH . E 4 HOH A 10 410 6 HOH HOH . E 4 HOH A 11 411 8 HOH HOH . E 4 HOH A 12 412 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 TCE . . . D 3 -23.889 43.785 14.088 1 74.06 ? O16 TCE 303 A 1 HETATM 2 C C14 TCE . . . D 3 -23.922 42.542 14.233 1 87.36 ? C14 TCE 303 A 1 HETATM 3 O O15 TCE . . . D 3 -24.063 41.965 15.334 1 80.76 ? O15 TCE 303 A 1 HETATM 4 C C5 TCE . . . D 3 -23.784 41.673 12.997 1 84.54 ? C5 TCE 303 A 1 HETATM 5 C C2 TCE . . . D 3 -25.082 41.044 12.552 1 81.44 ? C2 TCE 303 A 1 HETATM 6 P P TCE . . . D 3 -24.945 39.845 11.169 1 64.09 ? P TCE 303 A 1 HETATM 7 C C3 TCE . . . D 3 -23.899 40.726 9.946 1 84.9 ? C3 TCE 303 A 1 HETATM 8 C C6 TCE . . . D 3 -24.583 40.726 8.587 1 86.17 ? C6 TCE 303 A 1 HETATM 9 C C8 TCE . . . D 3 -24.485 42.053 7.859 1 89.07 ? C8 TCE 303 A 1 HETATM 10 O O10 TCE . . . D 3 -24.114 42.033 6.664 1 94.67 ? O10 TCE 303 A 1 HETATM 11 O O9 TCE . . . D 3 -24.778 43.096 8.488 1 89.41 ? O9 TCE 303 A 1 HETATM 12 C C1 TCE . . . D 3 -26.615 39.881 10.408 1 75.02 ? C1 TCE 303 A 1 HETATM 13 C C4 TCE . . . D 3 -26.963 41.345 10.152 1 84.24 ? C4 TCE 303 A 1 HETATM 14 C C11 TCE . . . D 3 -27.854 41.555 8.943 1 87.65 ? C11 TCE 303 A 1 HETATM 15 O O12 TCE . . . D 3 -28.866 40.827 8.821 1 90.8 ? O12 TCE 303 A 1 HETATM 16 O O13 TCE . . . D 3 -27.527 42.448 8.129 1 88.56 ? O13 TCE 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #