data_4U9Y
#
_model_server_result.job_id            paYhvyExBXv36BZmFBdWWA 
_model_server_result.datetime_utc      '2024-11-13 03:58:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4u9y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4U9Y 
#
_exptl.entry_id    4U9Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              767.534 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4U9Y 
_cell.length_a            42.849 
_cell.length_b            121.938 
_cell.length_c            37.397 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4U9Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H36 N7 O16 P3 S' 
_chem_comp.formula_weight    767.534 
_chem_comp.id                COA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A COA sing 70 n y 
N1A C6A COA doub 71 n y 
C2A N3A COA doub 72 n y 
C2A H2A COA sing 73 n n 
N3A C4A COA sing 74 n y 
C4A C5A COA doub 75 n y 
C4A N9A COA sing 76 n y 
C5A C6A COA sing 77 n y 
C5A N7A COA sing 78 n y 
C6A N6A COA sing 79 n n 
N6A H61A COA sing 80 n n 
N6A H62A COA sing 81 n n 
N7A C8A COA doub 82 n y 
C8A N9A COA sing 83 n y 
C8A H8A COA sing 84 n n 
N9A C1B COA sing 85 n n 
C1B C2B COA sing 86 n n 
C1B O4B COA sing 87 n n 
C1B H1B COA sing 88 n n 
C2B O2B COA sing 89 n n 
C2B C3B COA sing 90 n n 
C2B H2B COA sing 91 n n 
O2B HO2A COA sing 92 n n 
C3B O3B COA sing 93 n n 
C3B C4B COA sing 94 n n 
C3B H3B COA sing 95 n n 
O3B P3B COA sing 96 n n 
P3B O7A COA doub 97 n n 
P3B O8A COA sing 98 n n 
P3B O9A COA sing 99 n n 
O8A HOA8 COA sing 100 n n 
O9A HOA9 COA sing 101 n n 
C4B O4B COA sing 102 n n 
C4B C5B COA sing 103 n n 
C4B H4B COA sing 104 n n 
C5B O5B COA sing 105 n n 
C5B H51A COA sing 106 n n 
C5B H52A COA sing 107 n n 
O5B P1A COA sing 108 n n 
P1A O1A COA doub 109 n n 
P1A O2A COA sing 110 n n 
P1A O3A COA sing 111 n n 
O2A HOA2 COA sing 112 n n 
O3A P2A COA sing 113 n n 
P2A O4A COA doub 114 n n 
P2A O5A COA sing 115 n n 
P2A O6A COA sing 116 n n 
O5A HOA5 COA sing 117 n n 
O6A CCP COA sing 118 n n 
CBP CCP COA sing 119 n n 
CBP CDP COA sing 120 n n 
CBP CEP COA sing 121 n n 
CBP CAP COA sing 122 n n 
CCP H121 COA sing 123 n n 
CCP H122 COA sing 124 n n 
CDP H131 COA sing 125 n n 
CDP H132 COA sing 126 n n 
CDP H133 COA sing 127 n n 
CEP H141 COA sing 128 n n 
CEP H142 COA sing 129 n n 
CEP H143 COA sing 130 n n 
CAP OAP COA sing 131 n n 
CAP C9P COA sing 132 n n 
CAP H10 COA sing 133 n n 
OAP HO1 COA sing 134 n n 
C9P O9P COA doub 135 n n 
C9P N8P COA sing 136 n n 
N8P C7P COA sing 137 n n 
N8P HN8 COA sing 138 n n 
C7P C6P COA sing 139 n n 
C7P H71 COA sing 140 n n 
C7P H72 COA sing 141 n n 
C6P C5P COA sing 142 n n 
C6P H61 COA sing 143 n n 
C6P H62 COA sing 144 n n 
C5P O5P COA doub 145 n n 
C5P N4P COA sing 146 n n 
N4P C3P COA sing 147 n n 
N4P HN4 COA sing 148 n n 
C3P C2P COA sing 149 n n 
C3P H31 COA sing 150 n n 
C3P H32 COA sing 151 n n 
C2P S1P COA sing 152 n n 
C2P H21 COA sing 153 n n 
C2P H22 COA sing 154 n n 
S1P HS1 COA sing 155 n n 
#
_atom_sites.entry_id                     4U9Y 
_atom_sites.fract_transf_matrix[1][1]    0.023338 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008201 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 COA A 1 201 1 COA COA . 
C 3 BR A 1 202 1 BR BR . 
D 4 HOH A 1 301 77 HOH HOH . 
D 4 HOH A 2 302 67 HOH HOH . 
D 4 HOH A 3 303 80 HOH HOH . 
D 4 HOH A 4 304 64 HOH HOH . 
D 4 HOH A 5 305 51 HOH HOH . 
D 4 HOH A 6 306 52 HOH HOH . 
D 4 HOH A 7 307 90 HOH HOH . 
D 4 HOH A 8 308 34 HOH HOH . 
D 4 HOH A 9 309 95 HOH HOH . 
D 4 HOH A 10 310 43 HOH HOH . 
D 4 HOH A 11 311 81 HOH HOH . 
D 4 HOH A 12 312 45 HOH HOH . 
D 4 HOH A 13 313 71 HOH HOH . 
D 4 HOH A 14 314 97 HOH HOH . 
D 4 HOH A 15 315 27 HOH HOH . 
D 4 HOH A 16 316 18 HOH HOH . 
D 4 HOH A 17 317 47 HOH HOH . 
D 4 HOH A 18 318 102 HOH HOH . 
D 4 HOH A 19 319 9 HOH HOH . 
D 4 HOH A 20 320 41 HOH HOH . 
D 4 HOH A 21 321 38 HOH HOH . 
D 4 HOH A 22 322 70 HOH HOH . 
D 4 HOH A 23 323 79 HOH HOH . 
D 4 HOH A 24 324 74 HOH HOH . 
D 4 HOH A 25 325 40 HOH HOH . 
D 4 HOH A 26 326 36 HOH HOH . 
D 4 HOH A 27 327 16 HOH HOH . 
D 4 HOH A 28 328 62 HOH HOH . 
D 4 HOH A 29 329 37 HOH HOH . 
D 4 HOH A 30 330 89 HOH HOH . 
D 4 HOH A 31 331 61 HOH HOH . 
D 4 HOH A 32 332 78 HOH HOH . 
D 4 HOH A 33 333 39 HOH HOH . 
D 4 HOH A 34 334 75 HOH HOH . 
D 4 HOH A 35 335 100 HOH HOH . 
D 4 HOH A 36 336 26 HOH HOH . 
D 4 HOH A 37 337 48 HOH HOH . 
D 4 HOH A 38 338 99 HOH HOH . 
D 4 HOH A 39 339 96 HOH HOH . 
D 4 HOH A 40 340 44 HOH HOH . 
D 4 HOH A 41 341 57 HOH HOH . 
D 4 HOH A 42 342 85 HOH HOH . 
D 4 HOH A 43 343 103 HOH HOH . 
D 4 HOH A 44 344 104 HOH HOH . 
D 4 HOH A 45 345 1 HOH HOH . 
D 4 HOH A 46 346 2 HOH HOH . 
D 4 HOH A 47 347 3 HOH HOH . 
D 4 HOH A 48 348 4 HOH HOH . 
D 4 HOH A 49 349 5 HOH HOH . 
D 4 HOH A 50 350 6 HOH HOH . 
D 4 HOH A 51 351 7 HOH HOH . 
D 4 HOH A 52 352 8 HOH HOH . 
D 4 HOH A 53 353 10 HOH HOH . 
D 4 HOH A 54 354 11 HOH HOH . 
D 4 HOH A 55 355 12 HOH HOH . 
D 4 HOH A 56 356 13 HOH HOH . 
D 4 HOH A 57 357 14 HOH HOH . 
D 4 HOH A 58 358 15 HOH HOH . 
D 4 HOH A 59 359 17 HOH HOH . 
D 4 HOH A 60 360 19 HOH HOH . 
D 4 HOH A 61 361 20 HOH HOH . 
D 4 HOH A 62 362 21 HOH HOH . 
D 4 HOH A 63 363 22 HOH HOH . 
D 4 HOH A 64 364 23 HOH HOH . 
D 4 HOH A 65 365 24 HOH HOH . 
D 4 HOH A 66 366 25 HOH HOH . 
D 4 HOH A 67 367 28 HOH HOH . 
D 4 HOH A 68 368 29 HOH HOH . 
D 4 HOH A 69 369 30 HOH HOH . 
D 4 HOH A 70 370 31 HOH HOH . 
D 4 HOH A 71 371 32 HOH HOH . 
D 4 HOH A 72 372 33 HOH HOH . 
D 4 HOH A 73 373 35 HOH HOH . 
D 4 HOH A 74 374 42 HOH HOH . 
D 4 HOH A 75 375 46 HOH HOH . 
D 4 HOH A 76 376 49 HOH HOH . 
D 4 HOH A 77 377 50 HOH HOH . 
D 4 HOH A 78 378 53 HOH HOH . 
D 4 HOH A 79 379 54 HOH HOH . 
D 4 HOH A 80 380 55 HOH HOH . 
D 4 HOH A 81 381 56 HOH HOH . 
D 4 HOH A 82 382 58 HOH HOH . 
D 4 HOH A 83 383 59 HOH HOH . 
D 4 HOH A 84 384 60 HOH HOH . 
D 4 HOH A 85 385 63 HOH HOH . 
D 4 HOH A 86 386 65 HOH HOH . 
D 4 HOH A 87 387 66 HOH HOH . 
D 4 HOH A 88 388 68 HOH HOH . 
D 4 HOH A 89 389 69 HOH HOH . 
D 4 HOH A 90 390 72 HOH HOH . 
D 4 HOH A 91 391 73 HOH HOH . 
D 4 HOH A 92 392 76 HOH HOH . 
D 4 HOH A 93 393 82 HOH HOH . 
D 4 HOH A 94 394 83 HOH HOH . 
D 4 HOH A 95 395 84 HOH HOH . 
D 4 HOH A 96 396 86 HOH HOH . 
D 4 HOH A 97 397 87 HOH HOH . 
D 4 HOH A 98 398 88 HOH HOH . 
D 4 HOH A 99 399 91 HOH HOH . 
D 4 HOH A 100 400 92 HOH HOH . 
D 4 HOH A 101 401 93 HOH HOH . 
D 4 HOH A 102 402 94 HOH HOH . 
D 4 HOH A 103 403 98 HOH HOH . 
D 4 HOH A 104 404 101 HOH HOH . 
D 4 HOH A 105 405 105 HOH HOH . 
D 4 HOH A 106 406 106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A COA . . . B 2 -8.629 -2.336 -14.744 1 15.97 ? N1A COA 201 A 1 
HETATM 2 C C2A COA . . . B 2 -9.845 -1.963 -15.183 1 18.23 ? C2A COA 201 A 1 
HETATM 3 N N3A COA . . . B 2 -10.407 -0.774 -14.903 1 20.6 ? N3A COA 201 A 1 
HETATM 4 C C4A COA . . . B 2 -9.766 0.143 -14.137 1 18.7 ? C4A COA 201 A 1 
HETATM 5 C C5A COA . . . B 2 -8.431 -0.193 -13.621 1 16.83 ? C5A COA 201 A 1 
HETATM 6 C C6A COA . . . B 2 -7.876 -1.523 -13.973 1 14.28 ? C6A COA 201 A 1 
HETATM 7 N N6A COA . . . B 2 -6.653 -1.907 -13.537 1 10.67 ? N6A COA 201 A 1 
HETATM 8 N N7A COA . . . B 2 -8.018 0.867 -12.904 1 13.58 ? N7A COA 201 A 1 
HETATM 9 C C8A COA . . . B 2 -9.001 1.801 -12.954 1 15.73 ? C8A COA 201 A 1 
HETATM 10 N N9A COA . . . B 2 -10.038 1.379 -13.701 1 17.04 ? N9A COA 201 A 1 
HETATM 11 C C1B COA . . . B 2 -11.29 2.136 -13.944 1 15.32 ? C1B COA 201 A 1 
HETATM 12 C C2B COA . . . B 2 -12.433 1.241 -13.523 1 22.08 ? C2B COA 201 A 1 
HETATM 13 O O2B COA . . . B 2 -13.638 1.68 -14.154 1 15.81 ? O2B COA 201 A 1 
HETATM 14 C C3B COA . . . B 2 -12.504 1.511 -12.04 1 18.98 ? C3B COA 201 A 1 
HETATM 15 O O3B COA . . . B 2 -13.759 1.097 -11.516 1 21.92 ? O3B COA 201 A 1 
HETATM 16 P P3B COA . . . B 2 -13.839 -0.315 -10.738 1 17.13 ? P3B COA 201 A 1 
HETATM 17 O O7A COA . . . B 2 -15.071 -0.192 -9.879 1 20.42 ? O7A COA 201 A 1 
HETATM 18 O O8A COA . . . B 2 -12.553 -0.386 -9.949 1 12.88 ? O8A COA 201 A 1 
HETATM 19 O O9A COA . . . B 2 -13.938 -1.327 -11.856 1 17.1 ? O9A COA 201 A 1 
HETATM 20 C C4B COA . . . B 2 -12.257 3.007 -11.983 1 19.09 ? C4B COA 201 A 1 
HETATM 21 O O4B COA . . . B 2 -11.336 3.26 -13.056 1 16.98 ? O4B COA 201 A 1 
HETATM 22 C C5B COA . . . B 2 -11.661 3.455 -10.655 1 17.86 ? C5B COA 201 A 1 
HETATM 23 O O5B COA . . . B 2 -11.618 4.88 -10.634 1 17.36 ? O5B COA 201 A 1 
HETATM 24 P P1A COA . . . B 2 -10.364 5.612 -9.948 1 15.02 ? P1A COA 201 A 1 
HETATM 25 O O1A COA . . . B 2 -10.719 7.062 -9.719 1 20.64 ? O1A COA 201 A 1 
HETATM 26 O O2A COA . . . B 2 -9.855 4.76 -8.814 1 18.9 ? O2A COA 201 A 1 
HETATM 27 O O3A COA . . . B 2 -9.349 5.538 -11.192 1 15.27 ? O3A COA 201 A 1 
HETATM 28 P P2A COA . . . B 2 -7.75 5.63 -11.063 1 14.6 ? P2A COA 201 A 1 
HETATM 29 O O4A COA . . . B 2 -7.391 6.467 -9.859 1 14.83 ? O4A COA 201 A 1 
HETATM 30 O O5A COA . . . B 2 -7.165 4.249 -11.228 1 9.36 ? O5A COA 201 A 1 
HETATM 31 O O6A COA . . . B 2 -7.443 6.454 -12.409 1 17.71 ? O6A COA 201 A 1 
HETATM 32 C CBP COA . . . B 2 -6.363 6.031 -14.485 1 10.75 ? CBP COA 201 A 1 
HETATM 33 C CCP COA . . . B 2 -7.604 5.78 -13.654 1 10.1 ? CCP COA 201 A 1 
HETATM 34 C CDP COA . . . B 2 -6.645 5.595 -15.917 1 9.28 ? CDP COA 201 A 1 
HETATM 35 C CEP COA . . . B 2 -5.992 7.508 -14.446 1 8.79 ? CEP COA 201 A 1 
HETATM 36 C CAP COA . . . B 2 -5.267 5.18 -13.842 1 11.93 ? CAP COA 201 A 1 
HETATM 37 O OAP COA . . . B 2 -5.741 3.837 -13.708 1 11.37 ? OAP COA 201 A 1 
HETATM 38 C C9P COA . . . B 2 -3.988 5.175 -14.63 1 17.86 ? C9P COA 201 A 1 
HETATM 39 O O9P COA . . . B 2 -3.133 6.013 -14.39 1 18.1 ? O9P COA 201 A 1 
HETATM 40 N N8P COA . . . B 2 -3.844 4.227 -15.555 1 15.2 ? N8P COA 201 A 1 
HETATM 41 C C7P COA . . . B 2 -2.637 4.091 -16.353 1 15.93 ? C7P COA 201 A 1 
HETATM 42 C C6P COA . . . B 2 -2.389 5.278 -17.28 1 9.89 ? C6P COA 201 A 1 
HETATM 43 C C5P COA . . . B 2 -3.566 5.46 -18.207 1 19.5 ? C5P COA 201 A 1 
HETATM 44 O O5P COA . . . B 2 -4.142 4.489 -18.672 1 15.31 ? O5P COA 201 A 1 
HETATM 45 N N4P COA . . . B 2 -3.918 6.719 -18.46 1 13.34 ? N4P COA 201 A 1 
HETATM 46 C C3P COA . . . B 2 -4.892 7.078 -19.476 1 23.56 ? C3P COA 201 A 1 
HETATM 47 C C2P COA . . . B 2 -4.389 6.823 -20.892 1 22.55 ? C2P COA 201 A 1 
HETATM 48 S S1P COA . . . B 2 -5.256 7.897 -22.062 1 36.51 ? S1P COA 201 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#