data_4U9Y # _model_server_result.job_id jBz1ESsOEXMCKP4uxbPCBQ _model_server_result.datetime_utc '2024-11-26 20:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4U9Y # _exptl.entry_id 4U9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4U9Y _cell.length_a 42.849 _cell.length_b 121.938 _cell.length_c 37.397 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 4U9Y _atom_sites.fract_transf_matrix[1][1] 0.023338 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 201 1 COA COA . C 3 BR A 1 202 1 BR BR . D 4 HOH A 1 301 77 HOH HOH . D 4 HOH A 2 302 67 HOH HOH . D 4 HOH A 3 303 80 HOH HOH . D 4 HOH A 4 304 64 HOH HOH . D 4 HOH A 5 305 51 HOH HOH . D 4 HOH A 6 306 52 HOH HOH . D 4 HOH A 7 307 90 HOH HOH . D 4 HOH A 8 308 34 HOH HOH . D 4 HOH A 9 309 95 HOH HOH . D 4 HOH A 10 310 43 HOH HOH . D 4 HOH A 11 311 81 HOH HOH . D 4 HOH A 12 312 45 HOH HOH . D 4 HOH A 13 313 71 HOH HOH . D 4 HOH A 14 314 97 HOH HOH . D 4 HOH A 15 315 27 HOH HOH . D 4 HOH A 16 316 18 HOH HOH . D 4 HOH A 17 317 47 HOH HOH . D 4 HOH A 18 318 102 HOH HOH . D 4 HOH A 19 319 9 HOH HOH . D 4 HOH A 20 320 41 HOH HOH . D 4 HOH A 21 321 38 HOH HOH . D 4 HOH A 22 322 70 HOH HOH . D 4 HOH A 23 323 79 HOH HOH . D 4 HOH A 24 324 74 HOH HOH . D 4 HOH A 25 325 40 HOH HOH . D 4 HOH A 26 326 36 HOH HOH . D 4 HOH A 27 327 16 HOH HOH . D 4 HOH A 28 328 62 HOH HOH . D 4 HOH A 29 329 37 HOH HOH . D 4 HOH A 30 330 89 HOH HOH . D 4 HOH A 31 331 61 HOH HOH . D 4 HOH A 32 332 78 HOH HOH . D 4 HOH A 33 333 39 HOH HOH . D 4 HOH A 34 334 75 HOH HOH . D 4 HOH A 35 335 100 HOH HOH . D 4 HOH A 36 336 26 HOH HOH . D 4 HOH A 37 337 48 HOH HOH . D 4 HOH A 38 338 99 HOH HOH . D 4 HOH A 39 339 96 HOH HOH . D 4 HOH A 40 340 44 HOH HOH . D 4 HOH A 41 341 57 HOH HOH . D 4 HOH A 42 342 85 HOH HOH . D 4 HOH A 43 343 103 HOH HOH . D 4 HOH A 44 344 104 HOH HOH . D 4 HOH A 45 345 1 HOH HOH . D 4 HOH A 46 346 2 HOH HOH . D 4 HOH A 47 347 3 HOH HOH . D 4 HOH A 48 348 4 HOH HOH . D 4 HOH A 49 349 5 HOH HOH . D 4 HOH A 50 350 6 HOH HOH . D 4 HOH A 51 351 7 HOH HOH . D 4 HOH A 52 352 8 HOH HOH . D 4 HOH A 53 353 10 HOH HOH . D 4 HOH A 54 354 11 HOH HOH . D 4 HOH A 55 355 12 HOH HOH . D 4 HOH A 56 356 13 HOH HOH . D 4 HOH A 57 357 14 HOH HOH . D 4 HOH A 58 358 15 HOH HOH . D 4 HOH A 59 359 17 HOH HOH . D 4 HOH A 60 360 19 HOH HOH . D 4 HOH A 61 361 20 HOH HOH . D 4 HOH A 62 362 21 HOH HOH . D 4 HOH A 63 363 22 HOH HOH . D 4 HOH A 64 364 23 HOH HOH . D 4 HOH A 65 365 24 HOH HOH . D 4 HOH A 66 366 25 HOH HOH . D 4 HOH A 67 367 28 HOH HOH . D 4 HOH A 68 368 29 HOH HOH . D 4 HOH A 69 369 30 HOH HOH . D 4 HOH A 70 370 31 HOH HOH . D 4 HOH A 71 371 32 HOH HOH . D 4 HOH A 72 372 33 HOH HOH . D 4 HOH A 73 373 35 HOH HOH . D 4 HOH A 74 374 42 HOH HOH . D 4 HOH A 75 375 46 HOH HOH . D 4 HOH A 76 376 49 HOH HOH . D 4 HOH A 77 377 50 HOH HOH . D 4 HOH A 78 378 53 HOH HOH . D 4 HOH A 79 379 54 HOH HOH . D 4 HOH A 80 380 55 HOH HOH . D 4 HOH A 81 381 56 HOH HOH . D 4 HOH A 82 382 58 HOH HOH . D 4 HOH A 83 383 59 HOH HOH . D 4 HOH A 84 384 60 HOH HOH . D 4 HOH A 85 385 63 HOH HOH . D 4 HOH A 86 386 65 HOH HOH . D 4 HOH A 87 387 66 HOH HOH . D 4 HOH A 88 388 68 HOH HOH . D 4 HOH A 89 389 69 HOH HOH . D 4 HOH A 90 390 72 HOH HOH . D 4 HOH A 91 391 73 HOH HOH . D 4 HOH A 92 392 76 HOH HOH . D 4 HOH A 93 393 82 HOH HOH . D 4 HOH A 94 394 83 HOH HOH . D 4 HOH A 95 395 84 HOH HOH . D 4 HOH A 96 396 86 HOH HOH . D 4 HOH A 97 397 87 HOH HOH . D 4 HOH A 98 398 88 HOH HOH . D 4 HOH A 99 399 91 HOH HOH . D 4 HOH A 100 400 92 HOH HOH . D 4 HOH A 101 401 93 HOH HOH . D 4 HOH A 102 402 94 HOH HOH . D 4 HOH A 103 403 98 HOH HOH . D 4 HOH A 104 404 101 HOH HOH . D 4 HOH A 105 405 105 HOH HOH . D 4 HOH A 106 406 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 -8.629 -2.336 -14.744 1 15.97 ? N1A COA 201 A 1 HETATM 2 C C2A COA . . . B 2 -9.845 -1.963 -15.183 1 18.23 ? C2A COA 201 A 1 HETATM 3 N N3A COA . . . B 2 -10.407 -0.774 -14.903 1 20.6 ? N3A COA 201 A 1 HETATM 4 C C4A COA . . . B 2 -9.766 0.143 -14.137 1 18.7 ? C4A COA 201 A 1 HETATM 5 C C5A COA . . . B 2 -8.431 -0.193 -13.621 1 16.83 ? C5A COA 201 A 1 HETATM 6 C C6A COA . . . B 2 -7.876 -1.523 -13.973 1 14.28 ? C6A COA 201 A 1 HETATM 7 N N6A COA . . . B 2 -6.653 -1.907 -13.537 1 10.67 ? N6A COA 201 A 1 HETATM 8 N N7A COA . . . B 2 -8.018 0.867 -12.904 1 13.58 ? N7A COA 201 A 1 HETATM 9 C C8A COA . . . B 2 -9.001 1.801 -12.954 1 15.73 ? C8A COA 201 A 1 HETATM 10 N N9A COA . . . B 2 -10.038 1.379 -13.701 1 17.04 ? N9A COA 201 A 1 HETATM 11 C C1B COA . . . B 2 -11.29 2.136 -13.944 1 15.32 ? C1B COA 201 A 1 HETATM 12 C C2B COA . . . B 2 -12.433 1.241 -13.523 1 22.08 ? C2B COA 201 A 1 HETATM 13 O O2B COA . . . B 2 -13.638 1.68 -14.154 1 15.81 ? O2B COA 201 A 1 HETATM 14 C C3B COA . . . B 2 -12.504 1.511 -12.04 1 18.98 ? C3B COA 201 A 1 HETATM 15 O O3B COA . . . B 2 -13.759 1.097 -11.516 1 21.92 ? O3B COA 201 A 1 HETATM 16 P P3B COA . . . B 2 -13.839 -0.315 -10.738 1 17.13 ? P3B COA 201 A 1 HETATM 17 O O7A COA . . . B 2 -15.071 -0.192 -9.879 1 20.42 ? O7A COA 201 A 1 HETATM 18 O O8A COA . . . B 2 -12.553 -0.386 -9.949 1 12.88 ? O8A COA 201 A 1 HETATM 19 O O9A COA . . . B 2 -13.938 -1.327 -11.856 1 17.1 ? O9A COA 201 A 1 HETATM 20 C C4B COA . . . B 2 -12.257 3.007 -11.983 1 19.09 ? C4B COA 201 A 1 HETATM 21 O O4B COA . . . B 2 -11.336 3.26 -13.056 1 16.98 ? O4B COA 201 A 1 HETATM 22 C C5B COA . . . B 2 -11.661 3.455 -10.655 1 17.86 ? C5B COA 201 A 1 HETATM 23 O O5B COA . . . B 2 -11.618 4.88 -10.634 1 17.36 ? O5B COA 201 A 1 HETATM 24 P P1A COA . . . B 2 -10.364 5.612 -9.948 1 15.02 ? P1A COA 201 A 1 HETATM 25 O O1A COA . . . B 2 -10.719 7.062 -9.719 1 20.64 ? O1A COA 201 A 1 HETATM 26 O O2A COA . . . B 2 -9.855 4.76 -8.814 1 18.9 ? O2A COA 201 A 1 HETATM 27 O O3A COA . . . B 2 -9.349 5.538 -11.192 1 15.27 ? O3A COA 201 A 1 HETATM 28 P P2A COA . . . B 2 -7.75 5.63 -11.063 1 14.6 ? P2A COA 201 A 1 HETATM 29 O O4A COA . . . B 2 -7.391 6.467 -9.859 1 14.83 ? O4A COA 201 A 1 HETATM 30 O O5A COA . . . B 2 -7.165 4.249 -11.228 1 9.36 ? O5A COA 201 A 1 HETATM 31 O O6A COA . . . B 2 -7.443 6.454 -12.409 1 17.71 ? O6A COA 201 A 1 HETATM 32 C CBP COA . . . B 2 -6.363 6.031 -14.485 1 10.75 ? CBP COA 201 A 1 HETATM 33 C CCP COA . . . B 2 -7.604 5.78 -13.654 1 10.1 ? CCP COA 201 A 1 HETATM 34 C CDP COA . . . B 2 -6.645 5.595 -15.917 1 9.28 ? CDP COA 201 A 1 HETATM 35 C CEP COA . . . B 2 -5.992 7.508 -14.446 1 8.79 ? CEP COA 201 A 1 HETATM 36 C CAP COA . . . B 2 -5.267 5.18 -13.842 1 11.93 ? CAP COA 201 A 1 HETATM 37 O OAP COA . . . B 2 -5.741 3.837 -13.708 1 11.37 ? OAP COA 201 A 1 HETATM 38 C C9P COA . . . B 2 -3.988 5.175 -14.63 1 17.86 ? C9P COA 201 A 1 HETATM 39 O O9P COA . . . B 2 -3.133 6.013 -14.39 1 18.1 ? O9P COA 201 A 1 HETATM 40 N N8P COA . . . B 2 -3.844 4.227 -15.555 1 15.2 ? N8P COA 201 A 1 HETATM 41 C C7P COA . . . B 2 -2.637 4.091 -16.353 1 15.93 ? C7P COA 201 A 1 HETATM 42 C C6P COA . . . B 2 -2.389 5.278 -17.28 1 9.89 ? C6P COA 201 A 1 HETATM 43 C C5P COA . . . B 2 -3.566 5.46 -18.207 1 19.5 ? C5P COA 201 A 1 HETATM 44 O O5P COA . . . B 2 -4.142 4.489 -18.672 1 15.31 ? O5P COA 201 A 1 HETATM 45 N N4P COA . . . B 2 -3.918 6.719 -18.46 1 13.34 ? N4P COA 201 A 1 HETATM 46 C C3P COA . . . B 2 -4.892 7.078 -19.476 1 23.56 ? C3P COA 201 A 1 HETATM 47 C C2P COA . . . B 2 -4.389 6.823 -20.892 1 22.55 ? C2P COA 201 A 1 HETATM 48 S S1P COA . . . B 2 -5.256 7.897 -22.062 1 36.51 ? S1P COA 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #