data_4U9Z # _model_server_result.job_id A-WDobn9svm1ugjsmMOudQ _model_server_result.datetime_utc '2024-11-13 03:43:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4u9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4U9Z # _exptl.entry_id 4U9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.03 _cell.angle_gamma 90 _cell.entry_id 4U9Z _cell.length_a 43.645 _cell.length_b 34.329 _cell.length_c 64.226 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 4U9Z _atom_sites.fract_transf_matrix[1][1] 0.022912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005304 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 201 1 COA COA . C 3 HOH A 1 301 45 HOH HOH . C 3 HOH A 2 302 90 HOH HOH . C 3 HOH A 3 303 80 HOH HOH . C 3 HOH A 4 304 81 HOH HOH . C 3 HOH A 5 305 65 HOH HOH . C 3 HOH A 6 306 21 HOH HOH . C 3 HOH A 7 307 78 HOH HOH . C 3 HOH A 8 308 18 HOH HOH . C 3 HOH A 9 309 101 HOH HOH . C 3 HOH A 10 310 39 HOH HOH . C 3 HOH A 11 311 62 HOH HOH . C 3 HOH A 12 312 1 HOH HOH . C 3 HOH A 13 313 57 HOH HOH . C 3 HOH A 14 314 7 HOH HOH . C 3 HOH A 15 315 61 HOH HOH . C 3 HOH A 16 316 42 HOH HOH . C 3 HOH A 17 317 36 HOH HOH . C 3 HOH A 18 318 13 HOH HOH . C 3 HOH A 19 319 56 HOH HOH . C 3 HOH A 20 320 41 HOH HOH . C 3 HOH A 21 321 22 HOH HOH . C 3 HOH A 22 322 96 HOH HOH . C 3 HOH A 23 323 98 HOH HOH . C 3 HOH A 24 324 72 HOH HOH . C 3 HOH A 25 325 11 HOH HOH . C 3 HOH A 26 326 76 HOH HOH . C 3 HOH A 27 327 34 HOH HOH . C 3 HOH A 28 328 74 HOH HOH . C 3 HOH A 29 329 87 HOH HOH . C 3 HOH A 30 330 83 HOH HOH . C 3 HOH A 31 331 20 HOH HOH . C 3 HOH A 32 332 37 HOH HOH . C 3 HOH A 33 333 23 HOH HOH . C 3 HOH A 34 334 32 HOH HOH . C 3 HOH A 35 335 82 HOH HOH . C 3 HOH A 36 336 29 HOH HOH . C 3 HOH A 37 337 30 HOH HOH . C 3 HOH A 38 338 28 HOH HOH . C 3 HOH A 39 339 71 HOH HOH . C 3 HOH A 40 340 60 HOH HOH . C 3 HOH A 41 341 64 HOH HOH . C 3 HOH A 42 342 70 HOH HOH . C 3 HOH A 43 343 75 HOH HOH . C 3 HOH A 44 344 77 HOH HOH . C 3 HOH A 45 345 66 HOH HOH . C 3 HOH A 46 346 55 HOH HOH . C 3 HOH A 47 347 54 HOH HOH . C 3 HOH A 48 348 69 HOH HOH . C 3 HOH A 49 349 89 HOH HOH . C 3 HOH A 50 350 92 HOH HOH . C 3 HOH A 51 351 53 HOH HOH . C 3 HOH A 52 352 63 HOH HOH . C 3 HOH A 53 353 2 HOH HOH . C 3 HOH A 54 354 3 HOH HOH . C 3 HOH A 55 355 4 HOH HOH . C 3 HOH A 56 356 5 HOH HOH . C 3 HOH A 57 357 6 HOH HOH . C 3 HOH A 58 358 8 HOH HOH . C 3 HOH A 59 359 9 HOH HOH . C 3 HOH A 60 360 10 HOH HOH . C 3 HOH A 61 361 12 HOH HOH . C 3 HOH A 62 362 14 HOH HOH . C 3 HOH A 63 363 15 HOH HOH . C 3 HOH A 64 364 16 HOH HOH . C 3 HOH A 65 365 17 HOH HOH . C 3 HOH A 66 366 19 HOH HOH . C 3 HOH A 67 367 24 HOH HOH . C 3 HOH A 68 368 25 HOH HOH . C 3 HOH A 69 369 26 HOH HOH . C 3 HOH A 70 370 27 HOH HOH . C 3 HOH A 71 371 31 HOH HOH . C 3 HOH A 72 372 33 HOH HOH . C 3 HOH A 73 373 35 HOH HOH . C 3 HOH A 74 374 38 HOH HOH . C 3 HOH A 75 375 40 HOH HOH . C 3 HOH A 76 376 43 HOH HOH . C 3 HOH A 77 377 44 HOH HOH . C 3 HOH A 78 378 46 HOH HOH . C 3 HOH A 79 379 47 HOH HOH . C 3 HOH A 80 380 48 HOH HOH . C 3 HOH A 81 381 49 HOH HOH . C 3 HOH A 82 382 50 HOH HOH . C 3 HOH A 83 383 51 HOH HOH . C 3 HOH A 84 384 52 HOH HOH . C 3 HOH A 85 385 58 HOH HOH . C 3 HOH A 86 386 59 HOH HOH . C 3 HOH A 87 387 67 HOH HOH . C 3 HOH A 88 388 68 HOH HOH . C 3 HOH A 89 389 73 HOH HOH . C 3 HOH A 90 390 79 HOH HOH . C 3 HOH A 91 391 84 HOH HOH . C 3 HOH A 92 392 85 HOH HOH . C 3 HOH A 93 393 86 HOH HOH . C 3 HOH A 94 394 88 HOH HOH . C 3 HOH A 95 395 91 HOH HOH . C 3 HOH A 96 396 93 HOH HOH . C 3 HOH A 97 397 94 HOH HOH . C 3 HOH A 98 398 95 HOH HOH . C 3 HOH A 99 399 97 HOH HOH . C 3 HOH A 100 400 99 HOH HOH . C 3 HOH A 101 401 100 HOH HOH . C 3 HOH A 102 402 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 1.42 3.38 33.67 0.97 27.56 ? N1A COA 201 A 1 HETATM 2 C C2A COA . . . B 2 0.874 4.585 33.447 0.97 34.38 ? C2A COA 201 A 1 HETATM 3 N N3A COA . . . B 2 1.17 5.33 32.369 0.97 28.58 ? N3A COA 201 A 1 HETATM 4 C C4A COA . . . B 2 2.056 4.866 31.447 0.97 27.08 ? C4A COA 201 A 1 HETATM 5 C C5A COA . . . B 2 2.691 3.554 31.62 0.97 35.47 ? C5A COA 201 A 1 HETATM 6 C C6A COA . . . B 2 2.311 2.805 32.834 0.97 26.3 ? C6A COA 201 A 1 HETATM 7 N N6A COA . . . B 2 2.835 1.584 33.066 0.97 27.31 ? N6A COA 201 A 1 HETATM 8 N N7A COA . . . B 2 3.511 3.357 30.567 0.97 35.29 ? N7A COA 201 A 1 HETATM 9 C C8A COA . . . B 2 3.408 4.459 29.778 0.97 22.75 ? C8A COA 201 A 1 HETATM 10 N N9A COA . . . B 2 2.533 5.349 30.31 0.97 25.92 ? N9A COA 201 A 1 HETATM 11 C C1B COA . . . B 2 2.156 6.674 29.777 0.97 20.15 ? C1B COA 201 A 1 HETATM 12 C C2B COA . . . B 2 2.515 7.721 30.804 0.97 21.67 ? C2B COA 201 A 1 HETATM 13 O O2B COA . . . B 2 1.823 8.945 30.515 0.97 22.8 ? O2B COA 201 A 1 HETATM 14 C C3B COA . . . B 2 3.98 7.899 30.497 0.97 26.93 ? C3B COA 201 A 1 HETATM 15 O O3B COA . . . B 2 4.434 9.129 30.984 0.97 27.24 ? O3B COA 201 A 1 HETATM 16 P P3B COA . . . B 2 5.12 9.2 32.445 0.97 33.87 ? P3B COA 201 A 1 HETATM 17 O O7A COA . . . B 2 5.57 10.643 32.474 0.97 34.24 ? O7A COA 201 A 1 HETATM 18 O O8A COA . . . B 2 6.215 8.168 32.455 0.97 26.23 ? O8A COA 201 A 1 HETATM 19 O O9A COA . . . B 2 4.012 8.81 33.399 0.97 35.48 ? O9A COA 201 A 1 HETATM 20 C C4B COA . . . B 2 3.991 7.866 28.976 0.97 21.54 ? C4B COA 201 A 1 HETATM 21 O O4B COA . . . B 2 2.974 6.923 28.646 0.97 20.74 ? O4B COA 201 A 1 HETATM 22 C C5B COA . . . B 2 5.343 7.44 28.428 0.97 19.8 ? C5B COA 201 A 1 HETATM 23 O O5B COA . . . B 2 5.431 7.79 27.046 0.97 20.34 ? O5B COA 201 A 1 HETATM 24 P P1A COA . . . B 2 6.399 6.879 26.162 0.97 22.62 ? P1A COA 201 A 1 HETATM 25 O O1A COA . . . B 2 6.606 7.57 24.848 0.97 24.93 ? O1A COA 201 A 1 HETATM 26 O O2A COA . . . B 2 7.602 6.403 26.963 0.97 21.74 ? O2A COA 201 A 1 HETATM 27 O O3A COA . . . B 2 5.387 5.657 25.952 0.97 17.12 ? O3A COA 201 A 1 HETATM 28 P P2A COA . . . B 2 5.726 4.083 25.785 0.97 23.54 ? P2A COA 201 A 1 HETATM 29 O O4A COA . . . B 2 6.936 3.84 24.924 0.97 19.18 ? O4A COA 201 A 1 HETATM 30 O O5A COA . . . B 2 5.66 3.436 27.152 0.97 21.84 ? O5A COA 201 A 1 HETATM 31 O O6A COA . . . B 2 4.42 3.646 24.942 0.97 23.96 ? O6A COA 201 A 1 HETATM 32 C CBP COA . . . B 2 2.368 2.374 25.198 0.97 26.57 ? CBP COA 201 A 1 HETATM 33 C CCP COA . . . B 2 3.125 3.663 25.553 0.97 20.45 ? CCP COA 201 A 1 HETATM 34 C CDP COA . . . B 2 0.929 2.457 25.67 0.97 22.11 ? CDP COA 201 A 1 HETATM 35 C CEP COA . . . B 2 2.397 2.143 23.691 0.97 21.48 ? CEP COA 201 A 1 HETATM 36 C CAP COA . . . B 2 3.055 1.225 25.937 0.97 20.91 ? CAP COA 201 A 1 HETATM 37 O OAP COA . . . B 2 3.106 1.555 27.33 0.97 29.13 ? OAP COA 201 A 1 HETATM 38 C C9P COA . . . B 2 2.393 -0.126 25.768 0.97 22.49 ? C9P COA 201 A 1 HETATM 39 O O9P COA . . . B 2 2.779 -0.868 24.9 0.97 18.34 ? O9P COA 201 A 1 HETATM 40 N N8P COA . . . B 2 1.431 -0.512 26.606 0.97 29.66 ? N8P COA 201 A 1 HETATM 41 C C7P COA . . . B 2 0.997 -1.904 26.662 0.97 28 ? C7P COA 201 A 1 HETATM 42 C C6P COA . . . B 2 -0.17 -2.185 25.722 0.97 21.83 ? C6P COA 201 A 1 HETATM 43 C C5P COA . . . B 2 -1.096 -0.982 25.673 0.97 34.86 ? C5P COA 201 A 1 HETATM 44 O O5P COA . . . B 2 -1.813 -0.695 26.617 0.97 33.58 ? O5P COA 201 A 1 HETATM 45 N N4P COA . . . B 2 -1.097 -0.24 24.567 0.97 31.88 ? N4P COA 201 A 1 HETATM 46 C C3P COA . . . B 2 -2.215 -0.273 23.655 0.97 29.78 ? C3P COA 201 A 1 HETATM 47 C C2P COA . . . B 2 -3.231 0.824 23.882 0.97 28.26 ? C2P COA 201 A 1 HETATM 48 S S1P COA . . . B 2 -4.848 0.039 23.763 0.97 51.83 ? S1P COA 201 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #