data_4UAK # _model_server_result.job_id jhP0bP0RCT4_di2qou4dng _model_server_result.datetime_utc '2025-01-10 11:08:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 4UAK # _exptl.entry_id 4UAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.41 _cell.angle_gamma 90 _cell.entry_id 4UAK _cell.length_a 114.2 _cell.length_b 43.97 _cell.length_c 91.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 207 A ASN 205 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OD1 ASP 220 A ASP 218 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 A OD2 ASP 220 A ASP 218 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 A OD2 ASP 220 A ASP 218 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc5 B O1B ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc6 B O2B ADP . A ADP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc7 B O2A ADP . A ADP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc8 C MG MG . A MG 502 1_555 H O HOH . A HOH 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc9 C MG MG . A MG 502 1_555 H O HOH . A HOH 777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc10 D MG MG . A MG 503 1_555 H O HOH . A HOH 778 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc11 D MG MG . A MG 503 1_555 H O HOH . A HOH 779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 127 n n C1 C2 EDO sing 128 n n C1 H11 EDO sing 129 n n C1 H12 EDO sing 130 n n O1 HO1 EDO sing 131 n n C2 O2 EDO sing 132 n n C2 H21 EDO sing 133 n n C2 H22 EDO sing 134 n n O2 HO2 EDO sing 135 n n # _atom_sites.entry_id 4UAK _atom_sites.fract_transf_matrix[1][1] 0.008757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002746 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 501 1 ADP ADP . C 3 MG A 1 502 2 MG MG . D 3 MG A 1 503 3 MG MG . E 4 CL A 1 504 1 CL CL . F 4 CL A 1 505 2 CL CL . G 5 EDO A 1 506 3 EDO EDO . H 6 HOH A 1 601 247 HOH HOH . H 6 HOH A 2 602 173 HOH HOH . H 6 HOH A 3 603 97 HOH HOH . H 6 HOH A 4 604 78 HOH HOH . H 6 HOH A 5 605 98 HOH HOH . H 6 HOH A 6 606 164 HOH HOH . H 6 HOH A 7 607 248 HOH HOH . H 6 HOH A 8 608 63 HOH HOH . H 6 HOH A 9 609 189 HOH HOH . H 6 HOH A 10 610 265 HOH HOH . H 6 HOH A 11 611 71 HOH HOH . H 6 HOH A 12 612 12 HOH HOH . H 6 HOH A 13 613 61 HOH HOH . H 6 HOH A 14 614 163 HOH HOH . H 6 HOH A 15 615 257 HOH HOH . H 6 HOH A 16 616 30 HOH HOH . H 6 HOH A 17 617 119 HOH HOH . H 6 HOH A 18 618 67 HOH HOH . H 6 HOH A 19 619 37 HOH HOH . H 6 HOH A 20 620 42 HOH HOH . H 6 HOH A 21 621 162 HOH HOH . H 6 HOH A 22 622 70 HOH HOH . H 6 HOH A 23 623 66 HOH HOH . H 6 HOH A 24 624 221 HOH HOH . H 6 HOH A 25 625 38 HOH HOH . H 6 HOH A 26 626 65 HOH HOH . H 6 HOH A 27 627 69 HOH HOH . H 6 HOH A 28 628 15 HOH HOH . H 6 HOH A 29 629 272 HOH HOH . H 6 HOH A 30 630 118 HOH HOH . H 6 HOH A 31 631 77 HOH HOH . H 6 HOH A 32 632 83 HOH HOH . H 6 HOH A 33 633 85 HOH HOH . H 6 HOH A 34 634 60 HOH HOH . H 6 HOH A 35 635 14 HOH HOH . H 6 HOH A 36 636 239 HOH HOH . H 6 HOH A 37 637 125 HOH HOH . H 6 HOH A 38 638 153 HOH HOH . H 6 HOH A 39 639 90 HOH HOH . H 6 HOH A 40 640 250 HOH HOH . H 6 HOH A 41 641 116 HOH HOH . H 6 HOH A 42 642 122 HOH HOH . H 6 HOH A 43 643 185 HOH HOH . H 6 HOH A 44 644 178 HOH HOH . H 6 HOH A 45 645 47 HOH HOH . H 6 HOH A 46 646 259 HOH HOH . H 6 HOH A 47 647 263 HOH HOH . H 6 HOH A 48 648 124 HOH HOH . H 6 HOH A 49 649 199 HOH HOH . H 6 HOH A 50 650 55 HOH HOH . H 6 HOH A 51 651 103 HOH HOH . H 6 HOH A 52 652 186 HOH HOH . H 6 HOH A 53 653 156 HOH HOH . H 6 HOH A 54 654 183 HOH HOH . H 6 HOH A 55 655 251 HOH HOH . H 6 HOH A 56 656 22 HOH HOH . H 6 HOH A 57 657 23 HOH HOH . H 6 HOH A 58 658 187 HOH HOH . H 6 HOH A 59 659 249 HOH HOH . H 6 HOH A 60 660 80 HOH HOH . H 6 HOH A 61 661 182 HOH HOH . H 6 HOH A 62 662 68 HOH HOH . H 6 HOH A 63 663 121 HOH HOH . H 6 HOH A 64 664 275 HOH HOH . H 6 HOH A 65 665 39 HOH HOH . H 6 HOH A 66 666 240 HOH HOH . H 6 HOH A 67 667 112 HOH HOH . H 6 HOH A 68 668 10 HOH HOH . H 6 HOH A 69 669 13 HOH HOH . H 6 HOH A 70 670 20 HOH HOH . H 6 HOH A 71 671 21 HOH HOH . H 6 HOH A 72 672 24 HOH HOH . H 6 HOH A 73 673 31 HOH HOH . H 6 HOH A 74 674 34 HOH HOH . H 6 HOH A 75 675 40 HOH HOH . H 6 HOH A 76 676 41 HOH HOH . H 6 HOH A 77 677 43 HOH HOH . H 6 HOH A 78 678 45 HOH HOH . H 6 HOH A 79 679 46 HOH HOH . H 6 HOH A 80 680 48 HOH HOH . H 6 HOH A 81 681 49 HOH HOH . H 6 HOH A 82 682 53 HOH HOH . H 6 HOH A 83 683 57 HOH HOH . H 6 HOH A 84 684 58 HOH HOH . H 6 HOH A 85 685 59 HOH HOH . H 6 HOH A 86 686 62 HOH HOH . H 6 HOH A 87 687 64 HOH HOH . H 6 HOH A 88 688 72 HOH HOH . H 6 HOH A 89 689 73 HOH HOH . H 6 HOH A 90 690 74 HOH HOH . H 6 HOH A 91 691 75 HOH HOH . H 6 HOH A 92 692 76 HOH HOH . H 6 HOH A 93 693 79 HOH HOH . H 6 HOH A 94 694 81 HOH HOH . H 6 HOH A 95 695 82 HOH HOH . H 6 HOH A 96 696 86 HOH HOH . H 6 HOH A 97 697 87 HOH HOH . H 6 HOH A 98 698 88 HOH HOH . H 6 HOH A 99 699 89 HOH HOH . H 6 HOH A 100 700 91 HOH HOH . H 6 HOH A 101 701 92 HOH HOH . H 6 HOH A 102 702 94 HOH HOH . H 6 HOH A 103 703 95 HOH HOH . H 6 HOH A 104 704 96 HOH HOH . H 6 HOH A 105 705 99 HOH HOH . H 6 HOH A 106 706 100 HOH HOH . H 6 HOH A 107 707 101 HOH HOH . H 6 HOH A 108 708 104 HOH HOH . H 6 HOH A 109 709 105 HOH HOH . H 6 HOH A 110 710 106 HOH HOH . H 6 HOH A 111 711 107 HOH HOH . H 6 HOH A 112 712 108 HOH HOH . H 6 HOH A 113 713 110 HOH HOH . H 6 HOH A 114 714 111 HOH HOH . H 6 HOH A 115 715 113 HOH HOH . H 6 HOH A 116 716 114 HOH HOH . H 6 HOH A 117 717 115 HOH HOH . H 6 HOH A 118 718 117 HOH HOH . H 6 HOH A 119 719 120 HOH HOH . H 6 HOH A 120 720 126 HOH HOH . H 6 HOH A 121 721 129 HOH HOH . H 6 HOH A 122 722 130 HOH HOH . H 6 HOH A 123 723 131 HOH HOH . H 6 HOH A 124 724 134 HOH HOH . H 6 HOH A 125 725 135 HOH HOH . H 6 HOH A 126 726 136 HOH HOH . H 6 HOH A 127 727 137 HOH HOH . H 6 HOH A 128 728 138 HOH HOH . H 6 HOH A 129 729 139 HOH HOH . H 6 HOH A 130 730 140 HOH HOH . H 6 HOH A 131 731 141 HOH HOH . H 6 HOH A 132 732 142 HOH HOH . H 6 HOH A 133 733 143 HOH HOH . H 6 HOH A 134 734 144 HOH HOH . H 6 HOH A 135 735 145 HOH HOH . H 6 HOH A 136 736 147 HOH HOH . H 6 HOH A 137 737 151 HOH HOH . H 6 HOH A 138 738 154 HOH HOH . H 6 HOH A 139 739 155 HOH HOH . H 6 HOH A 140 740 160 HOH HOH . H 6 HOH A 141 741 166 HOH HOH . H 6 HOH A 142 742 168 HOH HOH . H 6 HOH A 143 743 169 HOH HOH . H 6 HOH A 144 744 170 HOH HOH . H 6 HOH A 145 745 171 HOH HOH . H 6 HOH A 146 746 172 HOH HOH . H 6 HOH A 147 747 174 HOH HOH . H 6 HOH A 148 748 175 HOH HOH . H 6 HOH A 149 749 184 HOH HOH . H 6 HOH A 150 750 188 HOH HOH . H 6 HOH A 151 751 193 HOH HOH . H 6 HOH A 152 752 194 HOH HOH . H 6 HOH A 153 753 195 HOH HOH . H 6 HOH A 154 754 196 HOH HOH . H 6 HOH A 155 755 198 HOH HOH . H 6 HOH A 156 756 201 HOH HOH . H 6 HOH A 157 757 203 HOH HOH . H 6 HOH A 158 758 209 HOH HOH . H 6 HOH A 159 759 211 HOH HOH . H 6 HOH A 160 760 212 HOH HOH . H 6 HOH A 161 761 214 HOH HOH . H 6 HOH A 162 762 215 HOH HOH . H 6 HOH A 163 763 217 HOH HOH . H 6 HOH A 164 764 218 HOH HOH . H 6 HOH A 165 765 219 HOH HOH . H 6 HOH A 166 766 220 HOH HOH . H 6 HOH A 167 767 222 HOH HOH . H 6 HOH A 168 768 223 HOH HOH . H 6 HOH A 169 769 224 HOH HOH . H 6 HOH A 170 770 225 HOH HOH . H 6 HOH A 171 771 226 HOH HOH . H 6 HOH A 172 772 228 HOH HOH . H 6 HOH A 173 773 229 HOH HOH . H 6 HOH A 174 774 230 HOH HOH . H 6 HOH A 175 775 231 HOH HOH . H 6 HOH A 176 776 232 HOH HOH . H 6 HOH A 177 777 233 HOH HOH . H 6 HOH A 178 778 234 HOH HOH . H 6 HOH A 179 779 235 HOH HOH . H 6 HOH A 180 780 237 HOH HOH . H 6 HOH A 181 781 238 HOH HOH . H 6 HOH A 182 782 241 HOH HOH . H 6 HOH A 183 783 242 HOH HOH . H 6 HOH A 184 784 243 HOH HOH . H 6 HOH A 185 785 244 HOH HOH . H 6 HOH A 186 786 245 HOH HOH . H 6 HOH A 187 787 246 HOH HOH . H 6 HOH A 188 788 252 HOH HOH . H 6 HOH A 189 789 253 HOH HOH . H 6 HOH A 190 790 254 HOH HOH . H 6 HOH A 191 791 255 HOH HOH . H 6 HOH A 192 792 256 HOH HOH . H 6 HOH A 193 793 258 HOH HOH . H 6 HOH A 194 794 260 HOH HOH . H 6 HOH A 195 795 261 HOH HOH . H 6 HOH A 196 796 262 HOH HOH . H 6 HOH A 197 797 264 HOH HOH . H 6 HOH A 198 798 266 HOH HOH . H 6 HOH A 199 799 267 HOH HOH . H 6 HOH A 200 800 268 HOH HOH . H 6 HOH A 201 801 269 HOH HOH . H 6 HOH A 202 802 270 HOH HOH . H 6 HOH A 203 803 271 HOH HOH . H 6 HOH A 204 804 273 HOH HOH . H 6 HOH A 205 805 274 HOH HOH . H 6 HOH A 206 806 277 HOH HOH . H 6 HOH A 207 807 278 HOH HOH . H 6 HOH A 208 808 279 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 5 15.498 9.197 20.463 1 33.54 ? C1 EDO 506 A 1 HETATM 2 O O1 EDO . . . G 5 16.025 7.998 21.069 1 32.22 ? O1 EDO 506 A 1 HETATM 3 C C2 EDO . . . G 5 16.365 9.551 19.267 1 33.78 ? C2 EDO 506 A 1 HETATM 4 O O2 EDO . . . G 5 17.688 9.832 19.76 1 35.53 ? O2 EDO 506 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #