data_4UBE # _model_server_result.job_id 1Rd0Y8vBkWDCtpAG3ab7Dg _model_server_result.datetime_utc '2024-11-26 12:03:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ube # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4UBE # _exptl.entry_id 4UBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.232 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(6-AMINO-2-FLUORO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UBE _cell.length_a 71.916 _cell.length_b 71.916 _cell.length_c 110.521 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 124.562166 73.680667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 F N5 O4' _chem_comp.formula_weight 285.232 _chem_comp.id 2FA _chem_comp.mon_nstd_flag . _chem_comp.name 2-(6-AMINO-2-FLUORO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-FLUOROADENOSINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' 2FA sing 1 n n O5' H5' 2FA sing 2 n n C5' C4' 2FA sing 3 n n C5' "H5'1" 2FA sing 4 n n C5' "H5'2" 2FA sing 5 n n C4' O4' 2FA sing 6 n n C4' C3' 2FA sing 7 n n C4' H4' 2FA sing 8 n n O4' C1' 2FA sing 9 n n C1' N9 2FA sing 10 n n C1' C2' 2FA sing 11 n n C1' H1' 2FA sing 12 n n N9 C4 2FA sing 13 n y N9 C8 2FA sing 14 n y C4 N3 2FA doub 15 n y C4 C5 2FA sing 16 n y N3 C2 2FA sing 17 n y C2 F 2FA sing 18 n n C2 N1 2FA doub 19 n y N1 C6 2FA sing 20 n y C6 N6 2FA sing 21 n n C6 C5 2FA doub 22 n y N6 HN61 2FA sing 23 n n N6 HN62 2FA sing 24 n n C5 N7 2FA sing 25 n y N7 C8 2FA doub 26 n y C8 H8 2FA sing 27 n n C2' O2' 2FA sing 28 n n C2' C3' 2FA sing 29 n n C2' H2' 2FA sing 30 n n O2' H1 2FA sing 31 n n C3' O3' 2FA sing 32 n n C3' H3' 2FA sing 33 n n O3' H2 2FA sing 34 n n # _atom_sites.entry_id 4UBE _atom_sites.fract_transf_matrix[1][1] 0.013905 _atom_sites.fract_transf_matrix[1][2] 0.008028 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2FA A 1 401 1 2FA 2FA . C 3 HOH A 1 501 547 HOH HOH . C 3 HOH A 2 502 623 HOH HOH . C 3 HOH A 3 503 613 HOH HOH . C 3 HOH A 4 504 727 HOH HOH . C 3 HOH A 5 505 514 HOH HOH . C 3 HOH A 6 506 599 HOH HOH . C 3 HOH A 7 507 508 HOH HOH . C 3 HOH A 8 508 667 HOH HOH . C 3 HOH A 9 509 610 HOH HOH . C 3 HOH A 10 510 717 HOH HOH . C 3 HOH A 11 511 545 HOH HOH . C 3 HOH A 12 512 510 HOH HOH . C 3 HOH A 13 513 573 HOH HOH . C 3 HOH A 14 514 520 HOH HOH . C 3 HOH A 15 515 693 HOH HOH . C 3 HOH A 16 516 593 HOH HOH . C 3 HOH A 17 517 523 HOH HOH . C 3 HOH A 18 518 731 HOH HOH . C 3 HOH A 19 519 671 HOH HOH . C 3 HOH A 20 520 733 HOH HOH . C 3 HOH A 21 521 576 HOH HOH . C 3 HOH A 22 522 589 HOH HOH . C 3 HOH A 23 523 639 HOH HOH . C 3 HOH A 24 524 689 HOH HOH . C 3 HOH A 25 525 553 HOH HOH . C 3 HOH A 26 526 713 HOH HOH . C 3 HOH A 27 527 562 HOH HOH . C 3 HOH A 28 528 515 HOH HOH . C 3 HOH A 29 529 619 HOH HOH . C 3 HOH A 30 530 633 HOH HOH . C 3 HOH A 31 531 650 HOH HOH . C 3 HOH A 32 532 519 HOH HOH . C 3 HOH A 33 533 549 HOH HOH . C 3 HOH A 34 534 670 HOH HOH . C 3 HOH A 35 535 540 HOH HOH . C 3 HOH A 36 536 600 HOH HOH . C 3 HOH A 37 537 647 HOH HOH . C 3 HOH A 38 538 532 HOH HOH . C 3 HOH A 39 539 621 HOH HOH . C 3 HOH A 40 540 558 HOH HOH . C 3 HOH A 41 541 529 HOH HOH . C 3 HOH A 42 542 524 HOH HOH . C 3 HOH A 43 543 598 HOH HOH . C 3 HOH A 44 544 528 HOH HOH . C 3 HOH A 45 545 601 HOH HOH . C 3 HOH A 46 546 581 HOH HOH . C 3 HOH A 47 547 652 HOH HOH . C 3 HOH A 48 548 531 HOH HOH . C 3 HOH A 49 549 635 HOH HOH . C 3 HOH A 50 550 634 HOH HOH . C 3 HOH A 51 551 534 HOH HOH . C 3 HOH A 52 552 625 HOH HOH . C 3 HOH A 53 553 730 HOH HOH . C 3 HOH A 54 554 546 HOH HOH . C 3 HOH A 55 555 640 HOH HOH . C 3 HOH A 56 556 541 HOH HOH . C 3 HOH A 57 557 696 HOH HOH . C 3 HOH A 58 558 729 HOH HOH . C 3 HOH A 59 559 674 HOH HOH . C 3 HOH A 60 560 694 HOH HOH . C 3 HOH A 61 561 741 HOH HOH . C 3 HOH A 62 562 700 HOH HOH . C 3 HOH A 63 563 723 HOH HOH . C 3 HOH A 64 564 726 HOH HOH . C 3 HOH A 65 565 568 HOH HOH . C 3 HOH A 66 566 684 HOH HOH . C 3 HOH A 67 567 699 HOH HOH . C 3 HOH A 68 568 715 HOH HOH . C 3 HOH A 69 569 701 HOH HOH . C 3 HOH A 70 570 552 HOH HOH . C 3 HOH A 71 571 632 HOH HOH . C 3 HOH A 72 572 680 HOH HOH . C 3 HOH A 73 573 605 HOH HOH . C 3 HOH A 74 574 609 HOH HOH . C 3 HOH A 75 575 716 HOH HOH . C 3 HOH A 76 576 661 HOH HOH . C 3 HOH A 77 577 683 HOH HOH . C 3 HOH A 78 578 705 HOH HOH . C 3 HOH A 79 579 710 HOH HOH . C 3 HOH A 80 580 658 HOH HOH . C 3 HOH A 81 581 626 HOH HOH . C 3 HOH A 82 582 656 HOH HOH . C 3 HOH A 83 583 616 HOH HOH . C 3 HOH A 84 584 722 HOH HOH . C 3 HOH A 85 585 572 HOH HOH . C 3 HOH A 86 586 692 HOH HOH . C 3 HOH A 87 587 550 HOH HOH . C 3 HOH A 88 588 735 HOH HOH . C 3 HOH A 89 589 742 HOH HOH . C 3 HOH A 90 590 732 HOH HOH . C 3 HOH A 91 591 502 HOH HOH . C 3 HOH A 92 592 503 HOH HOH . C 3 HOH A 93 593 504 HOH HOH . C 3 HOH A 94 594 505 HOH HOH . C 3 HOH A 95 595 506 HOH HOH . C 3 HOH A 96 596 507 HOH HOH . C 3 HOH A 97 597 509 HOH HOH . C 3 HOH A 98 598 511 HOH HOH . C 3 HOH A 99 599 512 HOH HOH . C 3 HOH A 100 600 513 HOH HOH . C 3 HOH A 101 601 516 HOH HOH . C 3 HOH A 102 602 517 HOH HOH . C 3 HOH A 103 603 518 HOH HOH . C 3 HOH A 104 604 521 HOH HOH . C 3 HOH A 105 605 522 HOH HOH . C 3 HOH A 106 606 525 HOH HOH . C 3 HOH A 107 607 526 HOH HOH . C 3 HOH A 108 608 527 HOH HOH . C 3 HOH A 109 609 530 HOH HOH . C 3 HOH A 110 610 533 HOH HOH . C 3 HOH A 111 611 535 HOH HOH . C 3 HOH A 112 612 536 HOH HOH . C 3 HOH A 113 613 537 HOH HOH . C 3 HOH A 114 614 538 HOH HOH . C 3 HOH A 115 615 539 HOH HOH . C 3 HOH A 116 616 542 HOH HOH . C 3 HOH A 117 617 543 HOH HOH . C 3 HOH A 118 618 544 HOH HOH . C 3 HOH A 119 619 548 HOH HOH . C 3 HOH A 120 620 551 HOH HOH . C 3 HOH A 121 621 554 HOH HOH . C 3 HOH A 122 622 555 HOH HOH . C 3 HOH A 123 623 556 HOH HOH . C 3 HOH A 124 624 557 HOH HOH . C 3 HOH A 125 625 559 HOH HOH . C 3 HOH A 126 626 560 HOH HOH . C 3 HOH A 127 627 561 HOH HOH . C 3 HOH A 128 628 563 HOH HOH . C 3 HOH A 129 629 564 HOH HOH . C 3 HOH A 130 630 565 HOH HOH . C 3 HOH A 131 631 566 HOH HOH . C 3 HOH A 132 632 567 HOH HOH . C 3 HOH A 133 633 569 HOH HOH . C 3 HOH A 134 634 570 HOH HOH . C 3 HOH A 135 635 571 HOH HOH . C 3 HOH A 136 636 574 HOH HOH . C 3 HOH A 137 637 575 HOH HOH . C 3 HOH A 138 638 577 HOH HOH . C 3 HOH A 139 639 578 HOH HOH . C 3 HOH A 140 640 579 HOH HOH . C 3 HOH A 141 641 580 HOH HOH . C 3 HOH A 142 642 582 HOH HOH . C 3 HOH A 143 643 583 HOH HOH . C 3 HOH A 144 644 584 HOH HOH . C 3 HOH A 145 645 585 HOH HOH . C 3 HOH A 146 646 586 HOH HOH . C 3 HOH A 147 647 587 HOH HOH . C 3 HOH A 148 648 588 HOH HOH . C 3 HOH A 149 649 590 HOH HOH . C 3 HOH A 150 650 591 HOH HOH . C 3 HOH A 151 651 592 HOH HOH . C 3 HOH A 152 652 594 HOH HOH . C 3 HOH A 153 653 595 HOH HOH . C 3 HOH A 154 654 596 HOH HOH . C 3 HOH A 155 655 597 HOH HOH . C 3 HOH A 156 656 602 HOH HOH . C 3 HOH A 157 657 603 HOH HOH . C 3 HOH A 158 658 604 HOH HOH . C 3 HOH A 159 659 606 HOH HOH . C 3 HOH A 160 660 607 HOH HOH . C 3 HOH A 161 661 608 HOH HOH . C 3 HOH A 162 662 611 HOH HOH . C 3 HOH A 163 663 612 HOH HOH . C 3 HOH A 164 664 614 HOH HOH . C 3 HOH A 165 665 615 HOH HOH . C 3 HOH A 166 666 617 HOH HOH . C 3 HOH A 167 667 618 HOH HOH . C 3 HOH A 168 668 620 HOH HOH . C 3 HOH A 169 669 622 HOH HOH . C 3 HOH A 170 670 624 HOH HOH . C 3 HOH A 171 671 627 HOH HOH . C 3 HOH A 172 672 628 HOH HOH . C 3 HOH A 173 673 629 HOH HOH . C 3 HOH A 174 674 630 HOH HOH . C 3 HOH A 175 675 631 HOH HOH . C 3 HOH A 176 676 636 HOH HOH . C 3 HOH A 177 677 637 HOH HOH . C 3 HOH A 178 678 638 HOH HOH . C 3 HOH A 179 679 641 HOH HOH . C 3 HOH A 180 680 642 HOH HOH . C 3 HOH A 181 681 643 HOH HOH . C 3 HOH A 182 682 644 HOH HOH . C 3 HOH A 183 683 645 HOH HOH . C 3 HOH A 184 684 646 HOH HOH . C 3 HOH A 185 685 648 HOH HOH . C 3 HOH A 186 686 649 HOH HOH . C 3 HOH A 187 687 651 HOH HOH . C 3 HOH A 188 688 653 HOH HOH . C 3 HOH A 189 689 654 HOH HOH . C 3 HOH A 190 690 655 HOH HOH . C 3 HOH A 191 691 657 HOH HOH . C 3 HOH A 192 692 659 HOH HOH . C 3 HOH A 193 693 660 HOH HOH . C 3 HOH A 194 694 662 HOH HOH . C 3 HOH A 195 695 663 HOH HOH . C 3 HOH A 196 696 664 HOH HOH . C 3 HOH A 197 697 665 HOH HOH . C 3 HOH A 198 698 666 HOH HOH . C 3 HOH A 199 699 668 HOH HOH . C 3 HOH A 200 700 669 HOH HOH . C 3 HOH A 201 701 672 HOH HOH . C 3 HOH A 202 702 673 HOH HOH . C 3 HOH A 203 703 675 HOH HOH . C 3 HOH A 204 704 676 HOH HOH . C 3 HOH A 205 705 677 HOH HOH . C 3 HOH A 206 706 678 HOH HOH . C 3 HOH A 207 707 679 HOH HOH . C 3 HOH A 208 708 681 HOH HOH . C 3 HOH A 209 709 682 HOH HOH . C 3 HOH A 210 710 685 HOH HOH . C 3 HOH A 211 711 686 HOH HOH . C 3 HOH A 212 712 687 HOH HOH . C 3 HOH A 213 713 688 HOH HOH . C 3 HOH A 214 714 690 HOH HOH . C 3 HOH A 215 715 691 HOH HOH . C 3 HOH A 216 716 695 HOH HOH . C 3 HOH A 217 717 697 HOH HOH . C 3 HOH A 218 718 698 HOH HOH . C 3 HOH A 219 719 702 HOH HOH . C 3 HOH A 220 720 703 HOH HOH . C 3 HOH A 221 721 704 HOH HOH . C 3 HOH A 222 722 706 HOH HOH . C 3 HOH A 223 723 707 HOH HOH . C 3 HOH A 224 724 708 HOH HOH . C 3 HOH A 225 725 709 HOH HOH . C 3 HOH A 226 726 711 HOH HOH . C 3 HOH A 227 727 712 HOH HOH . C 3 HOH A 228 728 714 HOH HOH . C 3 HOH A 229 729 718 HOH HOH . C 3 HOH A 230 730 719 HOH HOH . C 3 HOH A 231 731 720 HOH HOH . C 3 HOH A 232 732 721 HOH HOH . C 3 HOH A 233 733 724 HOH HOH . C 3 HOH A 234 734 725 HOH HOH . C 3 HOH A 235 735 728 HOH HOH . C 3 HOH A 236 736 734 HOH HOH . C 3 HOH A 237 737 736 HOH HOH . C 3 HOH A 238 738 737 HOH HOH . C 3 HOH A 239 739 738 HOH HOH . C 3 HOH A 240 740 739 HOH HOH . C 3 HOH A 241 741 740 HOH HOH . C 3 HOH A 242 742 743 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' 2FA . . . B 2 14.703 59.968 21.814 1 25.74 ? O5' 2FA 401 A 1 HETATM 2 C C5' 2FA . . . B 2 13.706 60.664 22.571 1 25.75 ? C5' 2FA 401 A 1 HETATM 3 C C4' 2FA . . . B 2 12.646 59.723 23.099 1 21.08 ? C4' 2FA 401 A 1 HETATM 4 O O4' 2FA . . . B 2 13.282 58.655 23.802 1 19.55 ? O4' 2FA 401 A 1 HETATM 5 C C1' 2FA . . . B 2 12.323 58.051 24.652 1 20.5 ? C1' 2FA 401 A 1 HETATM 6 N N9 2FA . . . B 2 13.06 57.385 25.729 1 20.47 ? N9 2FA 401 A 1 HETATM 7 C C4 2FA . . . B 2 13.142 56.026 25.99 1 19.56 ? C4 2FA 401 A 1 HETATM 8 N N3 2FA . . . B 2 12.559 54.942 25.413 1 21.72 ? N3 2FA 401 A 1 HETATM 9 C C2 2FA . . . B 2 12.826 53.743 25.897 1 21.15 ? C2 2FA 401 A 1 HETATM 10 F F 2FA . . . B 2 12.249 52.644 25.304 1 22.62 ? F 2FA 401 A 1 HETATM 11 N N1 2FA . . . B 2 13.62 53.546 26.914 1 22.07 ? N1 2FA 401 A 1 HETATM 12 C C6 2FA . . . B 2 14.233 54.581 27.519 1 23.65 ? C6 2FA 401 A 1 HETATM 13 N N6 2FA . . . B 2 15.123 54.333 28.668 1 23.08 ? N6 2FA 401 A 1 HETATM 14 C C5 2FA . . . B 2 13.984 55.858 27.049 1 23.03 ? C5 2FA 401 A 1 HETATM 15 N N7 2FA . . . B 2 14.445 57.167 27.442 1 22.08 ? N7 2FA 401 A 1 HETATM 16 C C8 2FA . . . B 2 13.903 58.039 26.638 1 23.72 ? C8 2FA 401 A 1 HETATM 17 C C2' 2FA . . . B 2 11.403 59.193 25.124 1 20.01 ? C2' 2FA 401 A 1 HETATM 18 O O2' 2FA . . . B 2 10.049 58.785 25.219 1 20.59 ? O2' 2FA 401 A 1 HETATM 19 C C3' 2FA . . . B 2 11.667 60.333 24.105 1 19.16 ? C3' 2FA 401 A 1 HETATM 20 O O3' 2FA . . . B 2 10.456 60.676 23.439 1 19.51 ? O3' 2FA 401 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #