data_4UBI # _model_server_result.job_id thSGxESLvLYo7wvU5CnqBg _model_server_result.datetime_utc '2024-11-18 15:41:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ubi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4UBI # _exptl.entry_id 4UBI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.102 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIETHYL HYDROGEN PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UBI _cell.length_a 48.533 _cell.length_b 101.044 _cell.length_c 222.282 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 218 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id P1 _struct_conn.ptnr2_label_comp_id DPF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DPF _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.518 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H11 O4 P' _chem_comp.formula_weight 154.102 _chem_comp.id DPF _chem_comp.mon_nstd_flag . _chem_comp.name 'DIETHYL HYDROGEN PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 P1 DPF sing 83 n n O4 HO4 DPF sing 84 n n P1 O3 DPF sing 85 n n P1 O2 DPF doub 86 n n P1 O1 DPF sing 87 n n O3 C1 DPF sing 88 n n C1 C4 DPF sing 89 n n C1 H11 DPF sing 90 n n C1 H12 DPF sing 91 n n C4 H41 DPF sing 92 n n C4 H42 DPF sing 93 n n C4 H43 DPF sing 94 n n O1 C2 DPF sing 95 n n C2 C3 DPF sing 96 n n C2 H21 DPF sing 97 n n C2 H22 DPF sing 98 n n C3 H31 DPF sing 99 n n C3 H32 DPF sing 100 n n C3 H33 DPF sing 101 n n # _atom_sites.entry_id 4UBI _atom_sites.fract_transf_matrix[1][1] 0.020605 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004499 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DPF A 1 601 601 DPF DPF . C 3 HOH A 1 701 219 HOH HOH . C 3 HOH A 2 702 326 HOH HOH . C 3 HOH A 3 703 186 HOH HOH . C 3 HOH A 4 704 29 HOH HOH . C 3 HOH A 5 705 102 HOH HOH . C 3 HOH A 6 706 207 HOH HOH . C 3 HOH A 7 707 93 HOH HOH . C 3 HOH A 8 708 318 HOH HOH . C 3 HOH A 9 709 97 HOH HOH . C 3 HOH A 10 710 260 HOH HOH . C 3 HOH A 11 711 213 HOH HOH . C 3 HOH A 12 712 257 HOH HOH . C 3 HOH A 13 713 268 HOH HOH . C 3 HOH A 14 714 7 HOH HOH . C 3 HOH A 15 715 32 HOH HOH . C 3 HOH A 16 716 181 HOH HOH . C 3 HOH A 17 717 315 HOH HOH . C 3 HOH A 18 718 349 HOH HOH . C 3 HOH A 19 719 129 HOH HOH . C 3 HOH A 20 720 238 HOH HOH . C 3 HOH A 21 721 249 HOH HOH . C 3 HOH A 22 722 24 HOH HOH . C 3 HOH A 23 723 274 HOH HOH . C 3 HOH A 24 724 385 HOH HOH . C 3 HOH A 25 725 252 HOH HOH . C 3 HOH A 26 726 378 HOH HOH . C 3 HOH A 27 727 329 HOH HOH . C 3 HOH A 28 728 396 HOH HOH . C 3 HOH A 29 729 380 HOH HOH . C 3 HOH A 30 730 191 HOH HOH . C 3 HOH A 31 731 14 HOH HOH . C 3 HOH A 32 732 159 HOH HOH . C 3 HOH A 33 733 270 HOH HOH . C 3 HOH A 34 734 339 HOH HOH . C 3 HOH A 35 735 40 HOH HOH . C 3 HOH A 36 736 289 HOH HOH . C 3 HOH A 37 737 48 HOH HOH . C 3 HOH A 38 738 306 HOH HOH . C 3 HOH A 39 739 401 HOH HOH . C 3 HOH A 40 740 221 HOH HOH . C 3 HOH A 41 741 276 HOH HOH . C 3 HOH A 42 742 70 HOH HOH . C 3 HOH A 43 743 397 HOH HOH . C 3 HOH A 44 744 2 HOH HOH . C 3 HOH A 45 745 3 HOH HOH . C 3 HOH A 46 746 4 HOH HOH . C 3 HOH A 47 747 5 HOH HOH . C 3 HOH A 48 748 6 HOH HOH . C 3 HOH A 49 749 8 HOH HOH . C 3 HOH A 50 750 9 HOH HOH . C 3 HOH A 51 751 10 HOH HOH . C 3 HOH A 52 752 11 HOH HOH . C 3 HOH A 53 753 12 HOH HOH . C 3 HOH A 54 754 13 HOH HOH . C 3 HOH A 55 755 15 HOH HOH . C 3 HOH A 56 756 16 HOH HOH . C 3 HOH A 57 757 17 HOH HOH . C 3 HOH A 58 758 18 HOH HOH . C 3 HOH A 59 759 19 HOH HOH . C 3 HOH A 60 760 20 HOH HOH . C 3 HOH A 61 761 21 HOH HOH . C 3 HOH A 62 762 23 HOH HOH . C 3 HOH A 63 763 26 HOH HOH . C 3 HOH A 64 764 27 HOH HOH . C 3 HOH A 65 765 28 HOH HOH . C 3 HOH A 66 766 30 HOH HOH . C 3 HOH A 67 767 31 HOH HOH . C 3 HOH A 68 768 33 HOH HOH . C 3 HOH A 69 769 35 HOH HOH . C 3 HOH A 70 770 36 HOH HOH . C 3 HOH A 71 771 37 HOH HOH . C 3 HOH A 72 772 38 HOH HOH . C 3 HOH A 73 773 39 HOH HOH . C 3 HOH A 74 774 42 HOH HOH . C 3 HOH A 75 775 43 HOH HOH . C 3 HOH A 76 776 45 HOH HOH . C 3 HOH A 77 777 46 HOH HOH . C 3 HOH A 78 778 49 HOH HOH . C 3 HOH A 79 779 50 HOH HOH . C 3 HOH A 80 780 51 HOH HOH . C 3 HOH A 81 781 53 HOH HOH . C 3 HOH A 82 782 55 HOH HOH . C 3 HOH A 83 783 56 HOH HOH . C 3 HOH A 84 784 57 HOH HOH . C 3 HOH A 85 785 60 HOH HOH . C 3 HOH A 86 786 61 HOH HOH . C 3 HOH A 87 787 62 HOH HOH . C 3 HOH A 88 788 64 HOH HOH . C 3 HOH A 89 789 65 HOH HOH . C 3 HOH A 90 790 66 HOH HOH . C 3 HOH A 91 791 67 HOH HOH . C 3 HOH A 92 792 68 HOH HOH . C 3 HOH A 93 793 69 HOH HOH . C 3 HOH A 94 794 71 HOH HOH . C 3 HOH A 95 795 74 HOH HOH . C 3 HOH A 96 796 76 HOH HOH . C 3 HOH A 97 797 77 HOH HOH . C 3 HOH A 98 798 78 HOH HOH . C 3 HOH A 99 799 79 HOH HOH . C 3 HOH A 100 800 80 HOH HOH . C 3 HOH A 101 801 81 HOH HOH . C 3 HOH A 102 802 82 HOH HOH . C 3 HOH A 103 803 83 HOH HOH . C 3 HOH A 104 804 84 HOH HOH . C 3 HOH A 105 805 85 HOH HOH . C 3 HOH A 106 806 86 HOH HOH . C 3 HOH A 107 807 88 HOH HOH . C 3 HOH A 108 808 89 HOH HOH . C 3 HOH A 109 809 90 HOH HOH . C 3 HOH A 110 810 95 HOH HOH . C 3 HOH A 111 811 99 HOH HOH . C 3 HOH A 112 812 103 HOH HOH . C 3 HOH A 113 813 104 HOH HOH . C 3 HOH A 114 814 106 HOH HOH . C 3 HOH A 115 815 107 HOH HOH . C 3 HOH A 116 816 110 HOH HOH . C 3 HOH A 117 817 112 HOH HOH . C 3 HOH A 118 818 115 HOH HOH . C 3 HOH A 119 819 117 HOH HOH . C 3 HOH A 120 820 118 HOH HOH . C 3 HOH A 121 821 119 HOH HOH . C 3 HOH A 122 822 120 HOH HOH . C 3 HOH A 123 823 121 HOH HOH . C 3 HOH A 124 824 123 HOH HOH . C 3 HOH A 125 825 124 HOH HOH . C 3 HOH A 126 826 126 HOH HOH . C 3 HOH A 127 827 128 HOH HOH . C 3 HOH A 128 828 130 HOH HOH . C 3 HOH A 129 829 131 HOH HOH . C 3 HOH A 130 830 132 HOH HOH . C 3 HOH A 131 831 133 HOH HOH . C 3 HOH A 132 832 134 HOH HOH . C 3 HOH A 133 833 136 HOH HOH . C 3 HOH A 134 834 137 HOH HOH . C 3 HOH A 135 835 138 HOH HOH . C 3 HOH A 136 836 140 HOH HOH . C 3 HOH A 137 837 141 HOH HOH . C 3 HOH A 138 838 142 HOH HOH . C 3 HOH A 139 839 143 HOH HOH . C 3 HOH A 140 840 144 HOH HOH . C 3 HOH A 141 841 145 HOH HOH . C 3 HOH A 142 842 146 HOH HOH . C 3 HOH A 143 843 151 HOH HOH . C 3 HOH A 144 844 156 HOH HOH . C 3 HOH A 145 845 157 HOH HOH . C 3 HOH A 146 846 158 HOH HOH . C 3 HOH A 147 847 169 HOH HOH . C 3 HOH A 148 848 170 HOH HOH . C 3 HOH A 149 849 182 HOH HOH . C 3 HOH A 150 850 183 HOH HOH . C 3 HOH A 151 851 184 HOH HOH . C 3 HOH A 152 852 188 HOH HOH . C 3 HOH A 153 853 189 HOH HOH . C 3 HOH A 154 854 193 HOH HOH . C 3 HOH A 155 855 198 HOH HOH . C 3 HOH A 156 856 199 HOH HOH . C 3 HOH A 157 857 201 HOH HOH . C 3 HOH A 158 858 210 HOH HOH . C 3 HOH A 159 859 212 HOH HOH . C 3 HOH A 160 860 215 HOH HOH . C 3 HOH A 161 861 220 HOH HOH . C 3 HOH A 162 862 235 HOH HOH . C 3 HOH A 163 863 240 HOH HOH . C 3 HOH A 164 864 250 HOH HOH . C 3 HOH A 165 865 253 HOH HOH . C 3 HOH A 166 866 254 HOH HOH . C 3 HOH A 167 867 255 HOH HOH . C 3 HOH A 168 868 256 HOH HOH . C 3 HOH A 169 869 263 HOH HOH . C 3 HOH A 170 870 265 HOH HOH . C 3 HOH A 171 871 266 HOH HOH . C 3 HOH A 172 872 269 HOH HOH . C 3 HOH A 173 873 273 HOH HOH . C 3 HOH A 174 874 279 HOH HOH . C 3 HOH A 175 875 281 HOH HOH . C 3 HOH A 176 876 282 HOH HOH . C 3 HOH A 177 877 283 HOH HOH . C 3 HOH A 178 878 285 HOH HOH . C 3 HOH A 179 879 286 HOH HOH . C 3 HOH A 180 880 287 HOH HOH . C 3 HOH A 181 881 291 HOH HOH . C 3 HOH A 182 882 294 HOH HOH . C 3 HOH A 183 883 295 HOH HOH . C 3 HOH A 184 884 297 HOH HOH . C 3 HOH A 185 885 304 HOH HOH . C 3 HOH A 186 886 305 HOH HOH . C 3 HOH A 187 887 307 HOH HOH . C 3 HOH A 188 888 309 HOH HOH . C 3 HOH A 189 889 311 HOH HOH . C 3 HOH A 190 890 314 HOH HOH . C 3 HOH A 191 891 317 HOH HOH . C 3 HOH A 192 892 324 HOH HOH . C 3 HOH A 193 893 327 HOH HOH . C 3 HOH A 194 894 333 HOH HOH . C 3 HOH A 195 895 336 HOH HOH . C 3 HOH A 196 896 345 HOH HOH . C 3 HOH A 197 897 346 HOH HOH . C 3 HOH A 198 898 351 HOH HOH . C 3 HOH A 199 899 352 HOH HOH . C 3 HOH A 200 900 359 HOH HOH . C 3 HOH A 201 901 370 HOH HOH . C 3 HOH A 202 902 379 HOH HOH . C 3 HOH A 203 903 381 HOH HOH . C 3 HOH A 204 904 384 HOH HOH . C 3 HOH A 205 905 394 HOH HOH . C 3 HOH A 206 906 398 HOH HOH . C 3 HOH A 207 907 400 HOH HOH . C 3 HOH A 208 908 402 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 DPF . . . B 2 18.724 -8.097 22.902 1 31.8 ? O4 DPF 601 A 1 HETATM 2 P P1 DPF . . . B 2 17.62 -9.041 22.518 1 40.44 ? P1 DPF 601 A 1 HETATM 3 O O3 DPF . . . B 2 17.501 -8.982 20.894 1 39.48 ? O3 DPF 601 A 1 HETATM 4 C C1 DPF . . . B 2 17.131 -10.153 20.262 1 39.21 ? C1 DPF 601 A 1 HETATM 5 C C4 DPF . . . B 2 16.144 -9.805 19.177 1 37.89 ? C4 DPF 601 A 1 HETATM 6 O O1 DPF . . . B 2 16.201 -8.34 23 1 40.83 ? O1 DPF 601 A 1 HETATM 7 C C2 DPF . . . B 2 15.932 -8.297 24.348 1 45.09 ? C2 DPF 601 A 1 HETATM 8 C C3 DPF . . . B 2 14.497 -7.861 24.554 1 50.81 ? C3 DPF 601 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #