data_4UBU # _model_server_result.job_id bpaIb_7QMl2EHSJ913F-Qw _model_server_result.datetime_utc '2025-03-06 09:22:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ubu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":400}' # _entry.id 4UBU # _exptl.entry_id 4UBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.33 _cell.angle_gamma 90 _cell.entry_id 4UBU _cell.length_a 127.61 _cell.length_b 105.16 _cell.length_c 147.66 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression G,P,Q,R,Z 1 1 E,M,N,X 1 2 E,M,N,X 2 1 G,P,Q,R,Z 2 3 A,D,I,L,U 3 1 B,C,J,K,V,W 4 1 F,H,O,S,T,Y,AA 5 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,y-1/2,-z -1 0 0 0 1 0 0 0 -1 127.61 -52.58 0 3 'crystal symmetry operation' 2_655 -x+1,y+1/2,-z -1 0 0 0 1 0 0 0 -1 127.61 52.58 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 O N N ? 2 P N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 100 A GLN 92 1_555 A N OAS 101 A OAS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C OAS 101 A OAS 93 1_555 A N GLY 102 A GLY 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 B C GLN 100 B GLN 92 1_555 B N OAS 101 B OAS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C OAS 101 B OAS 93 1_555 B N GLY 102 B GLY 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 C C GLN 100 C GLN 92 1_555 C N OAS 101 C OAS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale6 C C OAS 101 C OAS 93 1_555 C N GLY 102 C GLY 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 D C GLN 100 D GLN 92 1_555 D N OAS 101 D OAS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 D C OAS 101 D OAS 93 1_555 D N GLY 102 D GLY 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 E C GLN 100 E GLN 92 1_555 E N OAS 101 E OAS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale10 E C OAS 101 E OAS 93 1_555 E N GLY 102 E GLY 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale11 F C GLN 100 F GLN 92 1_555 F N OAS 101 F OAS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 F C OAS 101 F OAS 93 1_555 F N GLY 102 F GLY 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 G C GLN 100 G GLN 92 1_555 G N OAS 101 G OAS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 G C OAS 101 G OAS 93 1_555 G N GLY 102 G GLY 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 H C GLN 100 H GLN 92 1_555 H N OAS 101 H OAS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale16 H C OAS 101 H OAS 93 1_555 H N GLY 102 H GLY 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 4UBU _atom_sites.fract_transf_matrix[1][1] 0.007836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002445 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 COA A 1 400 400 COA COA . J 2 COA B 1 400 400 COA COA . K 2 COA C 1 400 400 COA COA . L 2 COA D 1 400 400 COA COA . M 2 COA E 1 401 400 COA COA . N 3 GOL E 1 402 4 GOL GOL . O 2 COA F 1 400 400 COA COA . P 2 COA G 1 401 400 COA COA . Q 3 GOL G 1 402 1 GOL GOL . R 3 GOL G 1 403 3 GOL GOL . S 2 COA H 1 401 400 COA COA . T 3 GOL H 1 402 2 GOL GOL . U 4 HOH A 1 501 12 HOH HOH . U 4 HOH A 2 502 1 HOH HOH . U 4 HOH A 3 503 4 HOH HOH . U 4 HOH A 4 504 5 HOH HOH . U 4 HOH A 5 505 9 HOH HOH . U 4 HOH A 6 506 3 HOH HOH . U 4 HOH A 7 507 11 HOH HOH . U 4 HOH A 8 508 7 HOH HOH . U 4 HOH A 9 509 8 HOH HOH . V 4 HOH B 1 501 20 HOH HOH . V 4 HOH B 2 502 19 HOH HOH . V 4 HOH B 3 503 21 HOH HOH . V 4 HOH B 4 504 42 HOH HOH . V 4 HOH B 5 505 13 HOH HOH . V 4 HOH B 6 506 16 HOH HOH . W 4 HOH C 1 501 26 HOH HOH . W 4 HOH C 2 502 23 HOH HOH . W 4 HOH C 3 503 17 HOH HOH . W 4 HOH C 4 504 25 HOH HOH . W 4 HOH C 5 505 43 HOH HOH . X 4 HOH E 1 501 18 HOH HOH . X 4 HOH E 2 502 22 HOH HOH . X 4 HOH E 3 503 44 HOH HOH . Y 4 HOH F 1 501 35 HOH HOH . Y 4 HOH F 2 502 38 HOH HOH . Y 4 HOH F 3 503 39 HOH HOH . Y 4 HOH F 4 504 28 HOH HOH . Y 4 HOH F 5 505 37 HOH HOH . Y 4 HOH F 6 506 29 HOH HOH . Y 4 HOH F 7 507 30 HOH HOH . Y 4 HOH F 8 508 27 HOH HOH . Y 4 HOH F 9 509 32 HOH HOH . Y 4 HOH F 10 510 36 HOH HOH . Y 4 HOH F 11 511 31 HOH HOH . Y 4 HOH F 12 512 33 HOH HOH . Y 4 HOH F 13 513 34 HOH HOH . Z 4 HOH G 1 501 40 HOH HOH . AA 4 HOH H 1 501 41 HOH HOH . AA 4 HOH H 2 502 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . J 2 44.757 34.387 35.341 1 150.77 ? N1A COA 400 B 1 HETATM 2 C C2A COA . . . J 2 45.41 35.535 35.638 1 157.56 ? C2A COA 400 B 1 HETATM 3 N N3A COA . . . J 2 46.349 35.604 36.605 1 144.96 ? N3A COA 400 B 1 HETATM 4 C C4A COA . . . J 2 46.69 34.511 37.343 1 125.7 ? C4A COA 400 B 1 HETATM 5 C C5A COA . . . J 2 46.029 33.227 37.078 1 118.21 ? C5A COA 400 B 1 HETATM 6 C C6A COA . . . J 2 45.003 33.224 35.997 1 129.32 ? C6A COA 400 B 1 HETATM 7 N N6A COA . . . J 2 44.322 32.107 35.66 1 126.38 ? N6A COA 400 B 1 HETATM 8 N N7A COA . . . J 2 46.57 32.355 37.947 1 104.92 ? N7A COA 400 B 1 HETATM 9 C C8A COA . . . J 2 47.492 33.012 38.702 1 106.23 ? C8A COA 400 B 1 HETATM 10 N N9A COA . . . J 2 47.547 34.309 38.345 1 118.57 ? N9A COA 400 B 1 HETATM 11 C C1B COA . . . J 2 48.425 35.414 38.847 1 121.66 ? C1B COA 400 B 1 HETATM 12 C C2B COA . . . J 2 47.738 36.508 39.649 1 125.57 ? C2B COA 400 B 1 HETATM 13 O O2B COA . . . J 2 47.018 37.413 38.798 1 128.12 ? O2B COA 400 B 1 HETATM 14 C C3B COA . . . J 2 48.899 37.171 40.371 1 128.81 ? C3B COA 400 B 1 HETATM 15 O O3B COA . . . J 2 49.163 38.502 39.936 1 155.03 ? O3B COA 400 B 1 HETATM 16 P P3B COA . . . J 2 48.251 39.779 40.319 1 187.31 ? P3B COA 400 B 1 HETATM 17 O O7A COA . . . J 2 46.908 39.208 40.727 1 180.43 ? O7A COA 400 B 1 HETATM 18 O O8A COA . . . J 2 48.228 40.55 39.018 1 188.19 ? O8A COA 400 B 1 HETATM 19 O O9A COA . . . J 2 49.004 40.474 41.436 1 175.55 ? O9A COA 400 B 1 HETATM 20 C C4B COA . . . J 2 50.095 36.3 40.011 1 121.13 ? C4B COA 400 B 1 HETATM 21 O O4B COA . . . J 2 49.525 35.032 39.673 1 115.56 ? O4B COA 400 B 1 HETATM 22 C C5B COA . . . J 2 51.15 36.193 41.095 1 123.08 ? C5B COA 400 B 1 HETATM 23 O O5B COA . . . J 2 51.137 37.321 41.965 1 124.42 ? O5B COA 400 B 1 HETATM 24 P P1A COA . . . J 2 51.216 37.073 43.561 1 126.28 ? P1A COA 400 B 1 HETATM 25 O O1A COA . . . J 2 50.117 36.11 43.957 1 124.2 ? O1A COA 400 B 1 HETATM 26 O O2A COA . . . J 2 51.309 38.422 44.24 1 134.16 ? O2A COA 400 B 1 HETATM 27 O O3A COA . . . J 2 52.634 36.334 43.755 1 113.42 ? O3A COA 400 B 1 HETATM 28 P P2A COA . . . J 2 53.962 37.232 43.733 1 110.2 ? P2A COA 400 B 1 HETATM 29 O O4A COA . . . J 2 54.133 37.879 45.08 1 107.93 ? O4A COA 400 B 1 HETATM 30 O O5A COA . . . J 2 53.899 38.085 42.476 1 122.16 ? O5A COA 400 B 1 HETATM 31 O O6A COA . . . J 2 55.165 36.182 43.538 1 114.96 ? O6A COA 400 B 1 HETATM 32 C CBP COA . . . J 2 56.466 34.295 44.438 1 101.01 ? CBP COA 400 B 1 HETATM 33 C CCP COA . . . J 2 55.089 34.861 44.056 1 108.12 ? CCP COA 400 B 1 HETATM 34 C CDP COA . . . J 2 57.04 33.507 43.263 1 98.87 ? CDP COA 400 B 1 HETATM 35 C CEP COA . . . J 2 57.443 35.415 44.8 1 101.8 ? CEP COA 400 B 1 HETATM 36 C CAP COA . . . J 2 56.189 33.37 45.632 1 94 ? CAP COA 400 B 1 HETATM 37 O OAP COA . . . J 2 55.317 32.328 45.187 1 103.43 ? OAP COA 400 B 1 HETATM 38 C C9P COA . . . J 2 57.396 32.737 46.246 1 92.14 ? C9P COA 400 B 1 HETATM 39 O O9P COA . . . J 2 58.289 33.448 46.645 1 104.33 ? O9P COA 400 B 1 HETATM 40 N N8P COA . . . J 2 57.427 31.409 46.329 1 90.45 ? N8P COA 400 B 1 HETATM 41 C C7P COA . . . J 2 58.572 30.65 46.828 1 99.03 ? C7P COA 400 B 1 HETATM 42 C C6P COA . . . J 2 59.374 31.32 47.949 1 101.86 ? C6P COA 400 B 1 HETATM 43 C C5P COA . . . J 2 60.442 30.394 48.494 1 107.38 ? C5P COA 400 B 1 HETATM 44 O O5P COA . . . J 2 61.619 30.673 48.261 1 103.81 ? O5P COA 400 B 1 HETATM 45 N N4P COA . . . J 2 60.008 29.35 49.237 1 105.25 ? N4P COA 400 B 1 HETATM 46 C C3P COA . . . J 2 60.893 28.43 49.95 1 103.41 ? C3P COA 400 B 1 HETATM 47 C C2P COA . . . J 2 60.943 28.703 51.462 1 105.65 ? C2P COA 400 B 1 HETATM 48 S S1P COA . . . J 2 62.569 28.299 52.223 1 96.66 ? S1P COA 400 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #