data_4UC1 # _model_server_result.job_id Ebcs2x5Z0_WmAahUx_mV2w _model_server_result.datetime_utc '2024-11-25 03:53:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":207}' # _entry.id 4UC1 # _exptl.entry_id 4UC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 562.658 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.92 _cell.angle_gamma 90 _cell.entry_id 4UC1 _cell.length_a 58.632 _cell.length_b 99.544 _cell.length_c 95.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,Y,Z 1 1 C,S,T,U,V,W,X,AA 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 42.229892 0 93.786539 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H34 N4 O4' _chem_comp.formula_weight 562.658 _chem_comp.id PP9 _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A PP9 sing 363 n y CHA C4D PP9 doub 364 z y CHA HHA PP9 sing 365 n n CHB C4A PP9 sing 366 n y CHB C1B PP9 doub 367 z y CHB HHB PP9 sing 368 n n CHC C4B PP9 sing 369 n y CHC C1C PP9 doub 370 z y CHC HHC PP9 sing 371 n n CHD C4C PP9 doub 372 z y CHD C1D PP9 sing 373 n y CHD HHD PP9 sing 374 n n NA C1A PP9 sing 375 n y NA C4A PP9 sing 376 n y NA HNA PP9 sing 377 n n C1A C2A PP9 doub 378 n y C2A C3A PP9 sing 379 n y C2A CAA PP9 sing 380 n n C3A C4A PP9 doub 381 n y C3A CMA PP9 sing 382 n n CMA HMA1 PP9 sing 383 n n CMA HMA2 PP9 sing 384 n n CMA HMA3 PP9 sing 385 n n CAA CBA PP9 sing 386 n n CAA HAA1 PP9 sing 387 n n CAA HAA2 PP9 sing 388 n n CBA CGA PP9 sing 389 n n CBA HBA1 PP9 sing 390 n n CBA HBA2 PP9 sing 391 n n CGA O1A PP9 doub 392 n n CGA O2A PP9 sing 393 n n O2A H2A PP9 sing 394 n n NB C1B PP9 sing 395 n y NB C4B PP9 doub 396 n y C1B C2B PP9 sing 397 n n C2B C3B PP9 doub 398 n n C2B CMB PP9 sing 399 n n C3B C4B PP9 sing 400 n n C3B CAB PP9 sing 401 n n CMB HMB1 PP9 sing 402 n n CMB HMB2 PP9 sing 403 n n CMB HMB3 PP9 sing 404 n n CAB CBB PP9 doub 405 n n CAB HAB PP9 sing 406 n n CBB HBB1 PP9 sing 407 n n CBB HBB2 PP9 sing 408 n n NC C1C PP9 sing 409 n y NC C4C PP9 sing 410 n y NC HNC PP9 sing 411 n n C1C C2C PP9 sing 412 n y C2C C3C PP9 doub 413 n y C2C CMC PP9 sing 414 n n C3C C4C PP9 sing 415 n y C3C CAC PP9 sing 416 n n CMC HMC1 PP9 sing 417 n n CMC HMC2 PP9 sing 418 n n CMC HMC3 PP9 sing 419 n n CAC CBC PP9 doub 420 n n CAC HAC PP9 sing 421 n n CBC HBC1 PP9 sing 422 n n CBC HBC2 PP9 sing 423 n n ND C1D PP9 doub 424 n y ND C4D PP9 sing 425 n y C1D C2D PP9 sing 426 n n C2D C3D PP9 doub 427 n n C2D CMD PP9 sing 428 n n C3D C4D PP9 sing 429 n n C3D CAD PP9 sing 430 n n CMD HMD1 PP9 sing 431 n n CMD HMD2 PP9 sing 432 n n CMD HMD3 PP9 sing 433 n n CAD CBD PP9 sing 434 n n CAD HAD1 PP9 sing 435 n n CAD HAD2 PP9 sing 436 n n CBD CGD PP9 sing 437 n n CBD HBD1 PP9 sing 438 n n CBD HBD2 PP9 sing 439 n n CGD O1D PP9 doub 440 n n CGD O2D PP9 sing 441 n n O2D H2D PP9 sing 442 n n # _atom_sites.entry_id 4UC1 _atom_sites.fract_transf_matrix[1][1] 0.017056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002982 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010046 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OLC A 1 201 201 OLC OLC . E 2 OLC A 1 202 202 OLC OLC . F 2 OLC A 1 203 209 OLC OLC . G 2 OLC A 1 204 211 OLC OLC . H 2 OLC A 1 205 214 OLC OLC . I 2 OLC A 1 206 216 OLC OLC . J 3 PP9 A 1 207 401 PP9 PP9 . K 2 OLC B 1 201 203 OLC OLC . L 2 OLC B 1 202 204 OLC OLC . M 2 OLC B 1 203 208 OLC OLC . N 2 OLC B 1 204 210 OLC OLC . O 2 OLC B 1 205 213 OLC OLC . P 2 OLC B 1 206 215 OLC OLC . Q 2 OLC B 1 207 217 OLC OLC . R 4 Z0P B 1 208 301 Z0P PGT . S 2 OLC C 1 201 205 OLC OLC . T 2 OLC C 1 202 206 OLC OLC . U 2 OLC C 1 203 207 OLC OLC . V 2 OLC C 1 204 212 OLC OLC . W 5 P4C C 1 205 501 P4C P4C . X 6 MOE C 1 206 501 MOE P6G . Y 7 HOH A 1 301 1103 HOH HOH . Y 7 HOH A 2 302 1065 HOH HOH . Y 7 HOH A 3 303 1037 HOH HOH . Y 7 HOH A 4 304 1035 HOH HOH . Y 7 HOH A 5 305 1012 HOH HOH . Y 7 HOH A 6 306 1032 HOH HOH . Y 7 HOH A 7 307 1015 HOH HOH . Y 7 HOH A 8 308 1001 HOH HOH . Y 7 HOH A 9 309 1006 HOH HOH . Y 7 HOH A 10 310 1008 HOH HOH . Y 7 HOH A 11 311 1010 HOH HOH . Y 7 HOH A 12 312 1019 HOH HOH . Y 7 HOH A 13 313 1025 HOH HOH . Y 7 HOH A 14 314 1026 HOH HOH . Y 7 HOH A 15 315 1038 HOH HOH . Y 7 HOH A 16 316 1040 HOH HOH . Y 7 HOH A 17 317 1041 HOH HOH . Y 7 HOH A 18 318 1044 HOH HOH . Y 7 HOH A 19 319 1049 HOH HOH . Y 7 HOH A 20 320 1051 HOH HOH . Y 7 HOH A 21 321 1061 HOH HOH . Y 7 HOH A 22 322 1064 HOH HOH . Y 7 HOH A 23 323 1069 HOH HOH . Y 7 HOH A 24 324 1073 HOH HOH . Y 7 HOH A 25 325 1075 HOH HOH . Y 7 HOH A 26 326 1084 HOH HOH . Y 7 HOH A 27 327 1097 HOH HOH . Y 7 HOH A 28 328 1098 HOH HOH . Y 7 HOH A 29 329 1107 HOH HOH . Y 7 HOH A 30 330 1110 HOH HOH . Y 7 HOH A 31 331 1117 HOH HOH . Y 7 HOH A 32 332 1142 HOH HOH . Y 7 HOH A 33 333 1155 HOH HOH . Y 7 HOH A 34 334 1160 HOH HOH . Z 7 HOH B 1 301 1161 HOH HOH . Z 7 HOH B 2 302 1148 HOH HOH . Z 7 HOH B 3 303 1056 HOH HOH . Z 7 HOH B 4 304 1017 HOH HOH . Z 7 HOH B 5 305 1003 HOH HOH . Z 7 HOH B 6 306 1085 HOH HOH . Z 7 HOH B 7 307 1014 HOH HOH . Z 7 HOH B 8 308 1082 HOH HOH . Z 7 HOH B 9 309 1123 HOH HOH . Z 7 HOH B 10 310 1002 HOH HOH . Z 7 HOH B 11 311 1004 HOH HOH . Z 7 HOH B 12 312 1007 HOH HOH . Z 7 HOH B 13 313 1013 HOH HOH . Z 7 HOH B 14 314 1020 HOH HOH . Z 7 HOH B 15 315 1067 HOH HOH . Z 7 HOH B 16 316 1070 HOH HOH . Z 7 HOH B 17 317 1078 HOH HOH . Z 7 HOH B 18 318 1090 HOH HOH . Z 7 HOH B 19 319 1093 HOH HOH . Z 7 HOH B 20 320 1106 HOH HOH . Z 7 HOH B 21 321 1167 HOH HOH . Z 7 HOH B 22 322 1170 HOH HOH . AA 7 HOH C 1 301 1048 HOH HOH . AA 7 HOH C 2 302 1072 HOH HOH . AA 7 HOH C 3 303 1021 HOH HOH . AA 7 HOH C 4 304 1172 HOH HOH . AA 7 HOH C 5 305 1022 HOH HOH . AA 7 HOH C 6 306 1036 HOH HOH . AA 7 HOH C 7 307 1063 HOH HOH . AA 7 HOH C 8 308 1024 HOH HOH . AA 7 HOH C 9 309 1050 HOH HOH . AA 7 HOH C 10 310 1005 HOH HOH . AA 7 HOH C 11 311 1009 HOH HOH . AA 7 HOH C 12 312 1029 HOH HOH . AA 7 HOH C 13 313 1031 HOH HOH . AA 7 HOH C 14 314 1046 HOH HOH . AA 7 HOH C 15 315 1053 HOH HOH . AA 7 HOH C 16 316 1059 HOH HOH . AA 7 HOH C 17 317 1066 HOH HOH . AA 7 HOH C 18 318 1071 HOH HOH . AA 7 HOH C 19 319 1076 HOH HOH . AA 7 HOH C 20 320 1079 HOH HOH . AA 7 HOH C 21 321 1091 HOH HOH . AA 7 HOH C 22 322 1104 HOH HOH . AA 7 HOH C 23 323 1124 HOH HOH . AA 7 HOH C 24 324 1130 HOH HOH . AA 7 HOH C 25 325 1131 HOH HOH . AA 7 HOH C 26 326 1135 HOH HOH . AA 7 HOH C 27 327 1171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA PP9 . . . J 3 4.379 33.369 19.196 0.57 32.48 ? CHA PP9 207 A 1 HETATM 2 C CHB PP9 . . . J 3 7.709 30.41 18.484 0.57 43.1 ? CHB PP9 207 A 1 HETATM 3 C CHC PP9 . . . J 3 7.175 29.279 23.188 0.57 40.74 ? CHC PP9 207 A 1 HETATM 4 C CHD PP9 . . . J 3 6.335 33.882 23.587 0.57 37.72 ? CHD PP9 207 A 1 HETATM 5 N NA PP9 . . . J 3 6.04 31.867 19.012 0.57 45.08 ? NA PP9 207 A 1 HETATM 6 C C1A PP9 . . . J 3 5.233 32.675 18.395 0.57 34.1 ? C1A PP9 207 A 1 HETATM 7 C C2A PP9 . . . J 3 5.503 32.679 16.986 0.57 32.69 ? C2A PP9 207 A 1 HETATM 8 C C3A PP9 . . . J 3 6.535 31.725 16.823 0.57 40.77 ? C3A PP9 207 A 1 HETATM 9 C C4A PP9 . . . J 3 6.802 31.291 18.137 0.57 40.97 ? C4A PP9 207 A 1 HETATM 10 C CMA PP9 . . . J 3 7.16 31.325 15.572 0.57 37.98 ? CMA PP9 207 A 1 HETATM 11 C CAA PP9 . . . J 3 4.889 33.387 15.858 0.57 38.46 ? CAA PP9 207 A 1 HETATM 12 C CBA PP9 . . . J 3 5.58 34.641 15.264 0.57 29.1 ? CBA PP9 207 A 1 HETATM 13 C CGA PP9 . . . J 3 6.871 34.459 14.35 0.57 38.71 ? CGA PP9 207 A 1 HETATM 14 O O1A PP9 . . . J 3 6.88 33.458 13.574 0.57 40.34 ? O1A PP9 207 A 1 HETATM 15 O O2A PP9 . . . J 3 7.796 35.311 14.421 0.57 31.28 ? O2A PP9 207 A 1 HETATM 16 N NB PP9 . . . J 3 7.083 30.225 20.878 0.57 42.75 ? NB PP9 207 A 1 HETATM 17 C C1B PP9 . . . J 3 7.77 29.886 19.714 0.57 35.23 ? C1B PP9 207 A 1 HETATM 18 C C2B PP9 . . . J 3 8.61 28.838 19.906 0.57 43.71 ? C2B PP9 207 A 1 HETATM 19 C C3B PP9 . . . J 3 8.498 28.484 21.199 0.57 36.66 ? C3B PP9 207 A 1 HETATM 20 C C4B PP9 . . . J 3 7.532 29.361 21.789 0.57 40.76 ? C4B PP9 207 A 1 HETATM 21 C CMB PP9 . . . J 3 9.333 28.42 18.806 0.57 45.63 ? CMB PP9 207 A 1 HETATM 22 C CAB PP9 . . . J 3 9.209 27.398 21.825 0.57 45.29 ? CAB PP9 207 A 1 HETATM 23 C CBB PP9 . . . J 3 10.299 26.874 21.382 0.57 43.2 ? CBB PP9 207 A 1 HETATM 24 N NC PP9 . . . J 3 6.889 31.657 23.084 0.57 39.28 ? NC PP9 207 A 1 HETATM 25 C C1C PP9 . . . J 3 6.812 30.441 23.708 0.57 38.97 ? C1C PP9 207 A 1 HETATM 26 C C2C PP9 . . . J 3 6.235 30.621 25.06 0.57 42.1 ? C2C PP9 207 A 1 HETATM 27 C C3C PP9 . . . J 3 6.018 31.96 25.128 0.57 39.32 ? C3C PP9 207 A 1 HETATM 28 C C4C PP9 . . . J 3 6.423 32.628 23.939 0.57 37.33 ? C4C PP9 207 A 1 HETATM 29 C CMC PP9 . . . J 3 6.036 29.512 25.915 0.57 48.58 ? CMC PP9 207 A 1 HETATM 30 C CAC PP9 . . . J 3 5.454 32.604 26.299 0.57 43.69 ? CAC PP9 207 A 1 HETATM 31 C CBC PP9 . . . J 3 6.193 33.435 26.969 0.57 46.4 ? CBC PP9 207 A 1 HETATM 32 N ND PP9 . . . J 3 5.533 33.201 21.373 0.57 43.52 ? ND PP9 207 A 1 HETATM 33 C C1D PP9 . . . J 3 5.659 34.096 22.355 0.57 34.37 ? C1D PP9 207 A 1 HETATM 34 C C2D PP9 . . . J 3 5.019 35.298 22.117 0.57 27.47 ? C2D PP9 207 A 1 HETATM 35 C C3D PP9 . . . J 3 4.453 35.149 20.845 0.57 26.07 ? C3D PP9 207 A 1 HETATM 36 C C4D PP9 . . . J 3 4.736 33.865 20.384 0.57 31.47 ? C4D PP9 207 A 1 HETATM 37 C CMD PP9 . . . J 3 5.079 36.324 23.088 0.57 33.89 ? CMD PP9 207 A 1 HETATM 38 C CAD PP9 . . . J 3 3.676 36.088 20.123 0.57 33.38 ? CAD PP9 207 A 1 HETATM 39 C CBD PP9 . . . J 3 3.969 36.231 18.644 0.57 31.98 ? CBD PP9 207 A 1 HETATM 40 C CGD PP9 . . . J 3 3.139 37.3 18.137 0.57 28.29 ? CGD PP9 207 A 1 HETATM 41 O O1D PP9 . . . J 3 3.047 38.284 18.9 0.57 20.22 ? O1D PP9 207 A 1 HETATM 42 O O2D PP9 . . . J 3 2.603 37.135 17.01 0.57 35.92 ? O2D PP9 207 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 609 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 42 #