data_4UCK # _model_server_result.job_id PeUm84bsldRB6TV15n83ZQ _model_server_result.datetime_utc '2024-11-05 04:07:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2409}' # _entry.id 4UCK # _exptl.entry_id 4UCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UCK _cell.length_a 80.34 _cell.length_b 84.35 _cell.length_c 181.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 1877 1_555 B SG CYS 279 B CYS 1877 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc1 A NE2 HIS 168 A HIS 1766 1_555 C ZN ZN . A ZN 2408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc2 A NE2 HIS 200 A HIS 1798 1_555 C ZN ZN . A ZN 2408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc3 A SG CYS 204 A CYS 1802 1_555 C ZN ZN . A ZN 2408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc4 A SG CYS 207 A CYS 1805 1_555 C ZN ZN . A ZN 2408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc5 B NE2 HIS 168 B HIS 1766 1_555 E ZN ZN . B ZN 2408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc6 B NE2 HIS 200 B HIS 1798 1_555 E ZN ZN . B ZN 2408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc7 B SG CYS 204 B CYS 1802 1_555 E ZN ZN . B ZN 2408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc8 B SG CYS 207 B CYS 1805 1_555 E ZN ZN . B ZN 2408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 4UCK _atom_sites.fract_transf_matrix[1][1] 0.012447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 2408 2408 ZN ZN . D 3 SAM A 1 2409 2409 SAM SAM . E 2 ZN B 1 2408 2408 ZN ZN . F 3 SAM B 1 2409 2409 SAM SAM . G 4 HOH A 1 3001 3001 HOH HOH . G 4 HOH A 2 3002 3002 HOH HOH . G 4 HOH A 3 3003 3003 HOH HOH . G 4 HOH A 4 3004 3004 HOH HOH . G 4 HOH A 5 3005 3005 HOH HOH . G 4 HOH A 6 3006 3006 HOH HOH . G 4 HOH A 7 3007 3007 HOH HOH . G 4 HOH A 8 3008 3008 HOH HOH . G 4 HOH A 9 3009 3009 HOH HOH . G 4 HOH A 10 3010 3010 HOH HOH . G 4 HOH A 11 3011 3011 HOH HOH . G 4 HOH A 12 3012 3012 HOH HOH . G 4 HOH A 13 3013 3013 HOH HOH . G 4 HOH A 14 3014 3014 HOH HOH . G 4 HOH A 15 3015 3015 HOH HOH . G 4 HOH A 16 3016 3016 HOH HOH . G 4 HOH A 17 3017 3017 HOH HOH . G 4 HOH A 18 3018 3018 HOH HOH . G 4 HOH A 19 3019 3019 HOH HOH . G 4 HOH A 20 3020 3020 HOH HOH . G 4 HOH A 21 3021 3021 HOH HOH . G 4 HOH A 22 3022 3022 HOH HOH . G 4 HOH A 23 3023 3023 HOH HOH . G 4 HOH A 24 3024 3024 HOH HOH . G 4 HOH A 25 3025 3025 HOH HOH . G 4 HOH A 26 3026 3026 HOH HOH . G 4 HOH A 27 3027 3027 HOH HOH . G 4 HOH A 28 3028 3028 HOH HOH . G 4 HOH A 29 3029 3029 HOH HOH . G 4 HOH A 30 3030 3030 HOH HOH . G 4 HOH A 31 3031 3031 HOH HOH . G 4 HOH A 32 3032 3032 HOH HOH . G 4 HOH A 33 3033 3033 HOH HOH . G 4 HOH A 34 3034 3034 HOH HOH . G 4 HOH A 35 3035 3035 HOH HOH . G 4 HOH A 36 3036 3036 HOH HOH . G 4 HOH A 37 3037 3037 HOH HOH . G 4 HOH A 38 3038 3038 HOH HOH . G 4 HOH A 39 3039 3039 HOH HOH . G 4 HOH A 40 3040 3040 HOH HOH . G 4 HOH A 41 3041 3041 HOH HOH . G 4 HOH A 42 3042 3042 HOH HOH . G 4 HOH A 43 3043 3043 HOH HOH . G 4 HOH A 44 3044 3044 HOH HOH . G 4 HOH A 45 3045 3045 HOH HOH . G 4 HOH A 46 3046 3046 HOH HOH . G 4 HOH A 47 3047 3047 HOH HOH . G 4 HOH A 48 3048 3048 HOH HOH . G 4 HOH A 49 3049 3049 HOH HOH . G 4 HOH A 50 3050 3050 HOH HOH . G 4 HOH A 51 3051 3051 HOH HOH . G 4 HOH A 52 3052 3052 HOH HOH . G 4 HOH A 53 3053 3053 HOH HOH . G 4 HOH A 54 3054 3054 HOH HOH . G 4 HOH A 55 3055 3055 HOH HOH . G 4 HOH A 56 3056 3056 HOH HOH . G 4 HOH A 57 3057 3057 HOH HOH . G 4 HOH A 58 3058 3058 HOH HOH . G 4 HOH A 59 3059 3059 HOH HOH . G 4 HOH A 60 3060 3060 HOH HOH . G 4 HOH A 61 3061 3061 HOH HOH . G 4 HOH A 62 3062 3062 HOH HOH . G 4 HOH A 63 3063 3063 HOH HOH . G 4 HOH A 64 3064 3064 HOH HOH . G 4 HOH A 65 3065 3065 HOH HOH . G 4 HOH A 66 3066 3066 HOH HOH . G 4 HOH A 67 3067 3067 HOH HOH . G 4 HOH A 68 3068 3068 HOH HOH . G 4 HOH A 69 3069 3069 HOH HOH . G 4 HOH A 70 3070 3070 HOH HOH . G 4 HOH A 71 3071 3071 HOH HOH . G 4 HOH A 72 3072 3072 HOH HOH . G 4 HOH A 73 3073 3073 HOH HOH . G 4 HOH A 74 3074 3074 HOH HOH . H 4 HOH B 1 3001 3001 HOH HOH . H 4 HOH B 2 3002 3002 HOH HOH . H 4 HOH B 3 3003 3003 HOH HOH . H 4 HOH B 4 3004 3004 HOH HOH . H 4 HOH B 5 3005 3005 HOH HOH . H 4 HOH B 6 3006 3006 HOH HOH . H 4 HOH B 7 3007 3007 HOH HOH . H 4 HOH B 8 3008 3008 HOH HOH . H 4 HOH B 9 3009 3009 HOH HOH . H 4 HOH B 10 3010 3010 HOH HOH . H 4 HOH B 11 3011 3011 HOH HOH . H 4 HOH B 12 3012 3012 HOH HOH . H 4 HOH B 13 3013 3013 HOH HOH . H 4 HOH B 14 3014 3014 HOH HOH . H 4 HOH B 15 3015 3015 HOH HOH . H 4 HOH B 16 3016 3016 HOH HOH . H 4 HOH B 17 3017 3017 HOH HOH . H 4 HOH B 18 3018 3018 HOH HOH . H 4 HOH B 19 3019 3019 HOH HOH . H 4 HOH B 20 3020 3020 HOH HOH . H 4 HOH B 21 3021 3021 HOH HOH . H 4 HOH B 22 3022 3022 HOH HOH . H 4 HOH B 23 3023 3023 HOH HOH . H 4 HOH B 24 3024 3024 HOH HOH . H 4 HOH B 25 3025 3025 HOH HOH . H 4 HOH B 26 3026 3026 HOH HOH . H 4 HOH B 27 3027 3027 HOH HOH . H 4 HOH B 28 3028 3028 HOH HOH . H 4 HOH B 29 3029 3029 HOH HOH . H 4 HOH B 30 3030 3030 HOH HOH . H 4 HOH B 31 3031 3031 HOH HOH . H 4 HOH B 32 3032 3032 HOH HOH . H 4 HOH B 33 3033 3033 HOH HOH . H 4 HOH B 34 3034 3034 HOH HOH . H 4 HOH B 35 3035 3035 HOH HOH . H 4 HOH B 36 3036 3036 HOH HOH . H 4 HOH B 37 3037 3037 HOH HOH . H 4 HOH B 38 3038 3038 HOH HOH . H 4 HOH B 39 3039 3039 HOH HOH . H 4 HOH B 40 3040 3040 HOH HOH . H 4 HOH B 41 3041 3041 HOH HOH . H 4 HOH B 42 3042 3042 HOH HOH . H 4 HOH B 43 3043 3043 HOH HOH . H 4 HOH B 44 3044 3044 HOH HOH . H 4 HOH B 45 3045 3045 HOH HOH . H 4 HOH B 46 3046 3046 HOH HOH . H 4 HOH B 47 3047 3047 HOH HOH . H 4 HOH B 48 3048 3048 HOH HOH . H 4 HOH B 49 3049 3049 HOH HOH . H 4 HOH B 50 3050 3050 HOH HOH . H 4 HOH B 51 3051 3051 HOH HOH . H 4 HOH B 52 3052 3052 HOH HOH . H 4 HOH B 53 3053 3053 HOH HOH . H 4 HOH B 54 3054 3054 HOH HOH . H 4 HOH B 55 3055 3055 HOH HOH . H 4 HOH B 56 3056 3056 HOH HOH . H 4 HOH B 57 3057 3057 HOH HOH . H 4 HOH B 58 3058 3058 HOH HOH . H 4 HOH B 59 3059 3059 HOH HOH . H 4 HOH B 60 3060 3060 HOH HOH . H 4 HOH B 61 3061 3061 HOH HOH . H 4 HOH B 62 3062 3062 HOH HOH . H 4 HOH B 63 3063 3063 HOH HOH . H 4 HOH B 64 3064 3064 HOH HOH . H 4 HOH B 65 3065 3065 HOH HOH . H 4 HOH B 66 3066 3066 HOH HOH . H 4 HOH B 67 3067 3067 HOH HOH . H 4 HOH B 68 3068 3068 HOH HOH . H 4 HOH B 69 3069 3069 HOH HOH . H 4 HOH B 70 3070 3070 HOH HOH . H 4 HOH B 71 3071 3071 HOH HOH . H 4 HOH B 72 3072 3072 HOH HOH . H 4 HOH B 73 3073 3073 HOH HOH . H 4 HOH B 74 3074 3074 HOH HOH . H 4 HOH B 75 3075 3075 HOH HOH . H 4 HOH B 76 3076 3076 HOH HOH . H 4 HOH B 77 3077 3077 HOH HOH . H 4 HOH B 78 3078 3078 HOH HOH . H 4 HOH B 79 3079 3079 HOH HOH . H 4 HOH B 80 3080 3080 HOH HOH . H 4 HOH B 81 3081 3081 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . D 3 27.497 -2.867 -50.136 1 82.86 ? N SAM 2409 A 1 HETATM 2 C CA SAM . . . D 3 26.888 -3.711 -51.171 1 81.63 ? CA SAM 2409 A 1 HETATM 3 C C SAM . . . D 3 25.341 -3.859 -51.045 1 81.7 ? C SAM 2409 A 1 HETATM 4 O O SAM . . . D 3 24.765 -3.222 -50.137 1 81.66 ? O SAM 2409 A 1 HETATM 5 O OXT SAM . . . D 3 24.78 -4.59 -51.885 1 82.76 ? OXT SAM 2409 A 1 HETATM 6 C CB SAM . . . D 3 27.459 -5.127 -51.15 1 82.3 ? CB SAM 2409 A 1 HETATM 7 C CG SAM . . . D 3 28.836 -5.174 -51.84 1 84.16 ? CG SAM 2409 A 1 HETATM 8 S SD SAM . . . D 3 29.343 -6.875 -51.957 1 85.51 ? SD SAM 2409 A 1 HETATM 9 C CE SAM . . . D 3 29.778 -7.268 -50.29 1 86.06 ? CE SAM 2409 A 1 HETATM 10 C C5' SAM . . . D 3 30.971 -6.798 -52.723 1 80.38 ? C5' SAM 2409 A 1 HETATM 11 C C4' SAM . . . D 3 30.946 -6.467 -54.211 1 76.69 ? C4' SAM 2409 A 1 HETATM 12 O O4' SAM . . . D 3 32.262 -6.05 -54.628 1 76.65 ? O4' SAM 2409 A 1 HETATM 13 C C3' SAM . . . D 3 30.526 -7.606 -55.146 1 75.16 ? C3' SAM 2409 A 1 HETATM 14 O O3' SAM . . . D 3 29.419 -7.214 -55.951 1 74.42 ? O3' SAM 2409 A 1 HETATM 15 C C2' SAM . . . D 3 31.793 -7.885 -55.969 1 75.6 ? C2' SAM 2409 A 1 HETATM 16 O O2' SAM . . . D 3 31.546 -8.26 -57.319 1 76.42 ? O2' SAM 2409 A 1 HETATM 17 C C1' SAM . . . D 3 32.471 -6.525 -55.937 1 76.12 ? C1' SAM 2409 A 1 HETATM 18 N N9 SAM . . . D 3 33.902 -6.539 -56.213 1 75.38 ? N9 SAM 2409 A 1 HETATM 19 C C8 SAM . . . D 3 34.782 -7.57 -56.007 1 75.84 ? C8 SAM 2409 A 1 HETATM 20 N N7 SAM . . . D 3 36.007 -7.314 -56.397 1 74.89 ? N7 SAM 2409 A 1 HETATM 21 C C5 SAM . . . D 3 35.929 -6.022 -56.895 1 72.86 ? C5 SAM 2409 A 1 HETATM 22 C C6 SAM . . . D 3 36.889 -5.17 -57.478 1 70.09 ? C6 SAM 2409 A 1 HETATM 23 N N6 SAM . . . D 3 38.151 -5.533 -57.718 1 69.69 ? N6 SAM 2409 A 1 HETATM 24 N N1 SAM . . . D 3 36.489 -3.93 -57.845 1 68.86 ? N1 SAM 2409 A 1 HETATM 25 C C2 SAM . . . D 3 35.211 -3.583 -57.657 1 70.2 ? C2 SAM 2409 A 1 HETATM 26 N N3 SAM . . . D 3 34.215 -4.307 -57.136 1 72.2 ? N3 SAM 2409 A 1 HETATM 27 C C4 SAM . . . D 3 34.642 -5.526 -56.773 1 73.68 ? C4 SAM 2409 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #