data_4UD1
#
_model_server_result.job_id            bALOdeXngCus6HIddEZyyA 
_model_server_result.datetime_utc      '2024-10-10 08:24:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ud1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1164}' 
#
_entry.id    4UD1 
#
_exptl.entry_id    4UD1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.98 
_cell.angle_gamma         90 
_cell.entry_id            4UD1 
_cell.length_a            208.648 
_cell.length_b            67.021 
_cell.length_c            60.94 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UD1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,O 1 1 
B,G,H,I,P 2 1 
C,J,K,L,Q 3 1 
D,M,R 4 1 
E,N,S 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 L N N 
? 4 M N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     4UD1 
_atom_sites.fract_transf_matrix[1][1]    0.004793 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01641 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NH4 A 1 1164 1164 NH4 NH4 . 
G 2 NH4 B 1 1164 1164 NH4 NH4 . 
H 3 IMD B 1 1165 1165 IMD IMD . 
I 4 GOL B 1 1166 1166 GOL GOL . 
J 2 NH4 C 1 1164 1164 NH4 NH4 . 
K 3 IMD C 1 1165 1165 IMD IMD . 
L 4 GOL C 1 1166 1166 GOL GOL . 
M 4 GOL D 1 1164 1164 GOL GOL . 
N 2 NH4 E 1 1164 1164 NH4 NH4 . 
O 5 HOH A 1 2001 2001 HOH HOH . 
O 5 HOH A 2 2002 2002 HOH HOH . 
O 5 HOH A 3 2003 2003 HOH HOH . 
O 5 HOH A 4 2004 2004 HOH HOH . 
O 5 HOH A 5 2005 2005 HOH HOH . 
O 5 HOH A 6 2006 2006 HOH HOH . 
O 5 HOH A 7 2007 2007 HOH HOH . 
O 5 HOH A 8 2008 2008 HOH HOH . 
O 5 HOH A 9 2009 2009 HOH HOH . 
O 5 HOH A 10 2010 2010 HOH HOH . 
O 5 HOH A 11 2011 2011 HOH HOH . 
O 5 HOH A 12 2012 2012 HOH HOH . 
O 5 HOH A 13 2013 2013 HOH HOH . 
O 5 HOH A 14 2014 2014 HOH HOH . 
O 5 HOH A 15 2015 2015 HOH HOH . 
O 5 HOH A 16 2016 2016 HOH HOH . 
O 5 HOH A 17 2017 2017 HOH HOH . 
O 5 HOH A 18 2018 2018 HOH HOH . 
P 5 HOH B 1 2001 2001 HOH HOH . 
P 5 HOH B 2 2002 2002 HOH HOH . 
P 5 HOH B 3 2003 2003 HOH HOH . 
P 5 HOH B 4 2004 2004 HOH HOH . 
P 5 HOH B 5 2005 2005 HOH HOH . 
P 5 HOH B 6 2006 2006 HOH HOH . 
P 5 HOH B 7 2007 2007 HOH HOH . 
P 5 HOH B 8 2008 2008 HOH HOH . 
Q 5 HOH C 1 2001 2001 HOH HOH . 
Q 5 HOH C 2 2002 2002 HOH HOH . 
Q 5 HOH C 3 2003 2003 HOH HOH . 
Q 5 HOH C 4 2004 2004 HOH HOH . 
Q 5 HOH C 5 2005 2005 HOH HOH . 
R 5 HOH D 1 2001 2001 HOH HOH . 
R 5 HOH D 2 2002 2002 HOH HOH . 
R 5 HOH D 3 2003 2003 HOH HOH . 
R 5 HOH D 4 2004 2004 HOH HOH . 
R 5 HOH D 5 2005 2005 HOH HOH . 
R 5 HOH D 6 2006 2006 HOH HOH . 
R 5 HOH D 7 2007 2007 HOH HOH . 
R 5 HOH D 8 2008 2008 HOH HOH . 
R 5 HOH D 9 2009 2009 HOH HOH . 
S 5 HOH E 1 2001 2001 HOH HOH . 
S 5 HOH E 2 2002 2002 HOH HOH . 
S 5 HOH E 3 2003 2003 HOH HOH . 
S 5 HOH E 4 2004 2004 HOH HOH . 
S 5 HOH E 5 2005 2005 HOH HOH . 
S 5 HOH E 6 2006 2006 HOH HOH . 
S 5 HOH E 7 2007 2007 HOH HOH . 
S 5 HOH E 8 2008 2008 HOH HOH . 
S 5 HOH E 9 2009 2009 HOH HOH . 
S 5 HOH E 10 2010 2010 HOH HOH . 
S 5 HOH E 11 2011 2011 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 4 38.637 -32.446 101.942 1 72.02 ? C1 GOL 1164 D 1 
HETATM 2 O O1 GOL . . . M 4 38.842 -31.217 102.61 1 69.47 ? O1 GOL 1164 D 1 
HETATM 3 C C2 GOL . . . M 4 37.499 -33.231 102.589 1 71.92 ? C2 GOL 1164 D 1 
HETATM 4 O O2 GOL . . . M 4 36.278 -32.532 102.484 1 71.48 ? O2 GOL 1164 D 1 
HETATM 5 C C3 GOL . . . M 4 37.796 -33.518 104.051 1 75.4 ? C3 GOL 1164 D 1 
HETATM 6 O O3 GOL . . . M 4 36.629 -33.309 104.817 1 76.74 ? O3 GOL 1164 D 1 
HETATM 7 H H11 GOL . . . M 4 39.552 -33.037 101.976 1 86.43 ? H11 GOL 1164 D 1 
HETATM 8 H H12 GOL . . . M 4 38.399 -32.256 100.895 1 86.43 ? H12 GOL 1164 D 1 
HETATM 9 H HO1 GOL . . . M 4 39.615 -30.759 102.219 1 83.37 ? HO1 GOL 1164 D 1 
HETATM 10 H H2 GOL . . . M 4 37.41 -34.185 102.07 1 86.3 ? H2 GOL 1164 D 1 
HETATM 11 H HO2 GOL . . . M 4 36.362 -31.661 102.925 1 85.78 ? HO2 GOL 1164 D 1 
HETATM 12 H H31 GOL . . . M 4 38.592 -32.861 104.402 1 90.48 ? H31 GOL 1164 D 1 
HETATM 13 H H32 GOL . . . M 4 38.131 -34.55 104.163 1 90.48 ? H32 GOL 1164 D 1 
HETATM 14 H HO3 GOL . . . M 4 36.802 -33.557 105.75 1 92.09 ? HO3 GOL 1164 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#