data_4UD1
#
_model_server_result.job_id            5JNtt-t5qLeXQxWD7tau6g 
_model_server_result.datetime_utc      '2025-03-06 22:10:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ud1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1165}' 
#
_entry.id    4UD1 
#
_exptl.entry_id    4UD1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.98 
_cell.angle_gamma         90 
_cell.entry_id            4UD1 
_cell.length_a            208.648 
_cell.length_b            67.021 
_cell.length_c            60.94 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4UD1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,O 1 1 
B,G,H,I,P 2 1 
C,J,K,L,Q 3 1 
D,M,R 4 1 
E,N,S 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 K N N 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 173 n y 
N1 C5 IMD sing 174 n y 
N1 HN1 IMD sing 175 n n 
C2 N3 IMD doub 176 n y 
C2 H2 IMD sing 177 n n 
N3 C4 IMD sing 178 n y 
N3 HN3 IMD sing 179 n n 
C4 C5 IMD doub 180 n y 
C4 H4 IMD sing 181 n n 
C5 H5 IMD sing 182 n n 
#
_atom_sites.entry_id                     4UD1 
_atom_sites.fract_transf_matrix[1][1]    0.004793 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01641 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NH4 A 1 1164 1164 NH4 NH4 . 
G 2 NH4 B 1 1164 1164 NH4 NH4 . 
H 3 IMD B 1 1165 1165 IMD IMD . 
I 4 GOL B 1 1166 1166 GOL GOL . 
J 2 NH4 C 1 1164 1164 NH4 NH4 . 
K 3 IMD C 1 1165 1165 IMD IMD . 
L 4 GOL C 1 1166 1166 GOL GOL . 
M 4 GOL D 1 1164 1164 GOL GOL . 
N 2 NH4 E 1 1164 1164 NH4 NH4 . 
O 5 HOH A 1 2001 2001 HOH HOH . 
O 5 HOH A 2 2002 2002 HOH HOH . 
O 5 HOH A 3 2003 2003 HOH HOH . 
O 5 HOH A 4 2004 2004 HOH HOH . 
O 5 HOH A 5 2005 2005 HOH HOH . 
O 5 HOH A 6 2006 2006 HOH HOH . 
O 5 HOH A 7 2007 2007 HOH HOH . 
O 5 HOH A 8 2008 2008 HOH HOH . 
O 5 HOH A 9 2009 2009 HOH HOH . 
O 5 HOH A 10 2010 2010 HOH HOH . 
O 5 HOH A 11 2011 2011 HOH HOH . 
O 5 HOH A 12 2012 2012 HOH HOH . 
O 5 HOH A 13 2013 2013 HOH HOH . 
O 5 HOH A 14 2014 2014 HOH HOH . 
O 5 HOH A 15 2015 2015 HOH HOH . 
O 5 HOH A 16 2016 2016 HOH HOH . 
O 5 HOH A 17 2017 2017 HOH HOH . 
O 5 HOH A 18 2018 2018 HOH HOH . 
P 5 HOH B 1 2001 2001 HOH HOH . 
P 5 HOH B 2 2002 2002 HOH HOH . 
P 5 HOH B 3 2003 2003 HOH HOH . 
P 5 HOH B 4 2004 2004 HOH HOH . 
P 5 HOH B 5 2005 2005 HOH HOH . 
P 5 HOH B 6 2006 2006 HOH HOH . 
P 5 HOH B 7 2007 2007 HOH HOH . 
P 5 HOH B 8 2008 2008 HOH HOH . 
Q 5 HOH C 1 2001 2001 HOH HOH . 
Q 5 HOH C 2 2002 2002 HOH HOH . 
Q 5 HOH C 3 2003 2003 HOH HOH . 
Q 5 HOH C 4 2004 2004 HOH HOH . 
Q 5 HOH C 5 2005 2005 HOH HOH . 
R 5 HOH D 1 2001 2001 HOH HOH . 
R 5 HOH D 2 2002 2002 HOH HOH . 
R 5 HOH D 3 2003 2003 HOH HOH . 
R 5 HOH D 4 2004 2004 HOH HOH . 
R 5 HOH D 5 2005 2005 HOH HOH . 
R 5 HOH D 6 2006 2006 HOH HOH . 
R 5 HOH D 7 2007 2007 HOH HOH . 
R 5 HOH D 8 2008 2008 HOH HOH . 
R 5 HOH D 9 2009 2009 HOH HOH . 
S 5 HOH E 1 2001 2001 HOH HOH . 
S 5 HOH E 2 2002 2002 HOH HOH . 
S 5 HOH E 3 2003 2003 HOH HOH . 
S 5 HOH E 4 2004 2004 HOH HOH . 
S 5 HOH E 5 2005 2005 HOH HOH . 
S 5 HOH E 6 2006 2006 HOH HOH . 
S 5 HOH E 7 2007 2007 HOH HOH . 
S 5 HOH E 8 2008 2008 HOH HOH . 
S 5 HOH E 9 2009 2009 HOH HOH . 
S 5 HOH E 10 2010 2010 HOH HOH . 
S 5 HOH E 11 2011 2011 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . H 3 31.032 -14.363 79.117 1 70.58 ? N1 IMD 1165 B 1 
HETATM 2 C C2 IMD . . . H 3 31.359 -14.912 80.316 1 71.42 ? C2 IMD 1165 B 1 
HETATM 3 N N3 IMD . . . H 3 32.045 -16.058 80.114 1 67.91 ? N3 IMD 1165 B 1 
HETATM 4 C C4 IMD . . . H 3 32.145 -16.232 78.774 1 71.76 ? C4 IMD 1165 B 1 
HETATM 5 C C5 IMD . . . H 3 31.511 -15.166 78.145 1 69.5 ? C5 IMD 1165 B 1 
HETATM 6 H HN1 IMD . . . H 3 30.535 -13.529 78.982 1 84.7 ? HN1 IMD 1165 B 1 
HETATM 7 H H2 IMD . . . H 3 31.136 -14.534 81.192 1 85.7 ? H2 IMD 1165 B 1 
HETATM 8 H HN3 IMD . . . H 3 32.4 -16.654 80.806 1 81.49 ? HN3 IMD 1165 B 1 
HETATM 9 H H4 IMD . . . H 3 32.591 -16.979 78.324 1 86.11 ? H4 IMD 1165 B 1 
HETATM 10 H H5 IMD . . . H 3 31.426 -15.027 77.179 1 83.4 ? H5 IMD 1165 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           441 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#