data_4UDA
#
_model_server_result.job_id            onZRiVg_tLylMiWcN0CK5Q 
_model_server_result.datetime_utc      '2024-10-13 08:16:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4uda 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1985}' 
#
_entry.id    4UDA 
#
_exptl.entry_id    4UDA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              392.461 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DEXAMETHASONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4UDA 
_cell.length_a            73 
_cell.length_b            81.4 
_cell.length_c            45.23 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UDA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H29 F O5' 
_chem_comp.formula_weight    392.461 
_chem_comp.id                DEX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DEXAMETHASONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     9A-FLUORO-16BETA-METHYLPREDNISOLONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DEX doub 83 n n 
C1 C10 DEX sing 84 n n 
C1 H1 DEX sing 85 n n 
C2 C3 DEX sing 86 n n 
C2 H2 DEX sing 87 n n 
C3 C4 DEX sing 88 n n 
C3 O1 DEX doub 89 n n 
C4 C5 DEX doub 90 n n 
C4 H4 DEX sing 91 n n 
C5 C6 DEX sing 92 n n 
C5 C10 DEX sing 93 n n 
C6 C7 DEX sing 94 n n 
C6 H61 DEX sing 95 n n 
C6 H62 DEX sing 96 n n 
C7 C8 DEX sing 97 n n 
C7 H71 DEX sing 98 n n 
C7 H72 DEX sing 99 n n 
C8 C9 DEX sing 100 n n 
C8 C14 DEX sing 101 n n 
C8 H8 DEX sing 102 n n 
C9 C10 DEX sing 103 n n 
C9 C11 DEX sing 104 n n 
C9 F1 DEX sing 105 n n 
C10 C19 DEX sing 106 n n 
C11 C12 DEX sing 107 n n 
C11 O2 DEX sing 108 n n 
C11 H11 DEX sing 109 n n 
C12 C13 DEX sing 110 n n 
C12 H211 DEX sing 111 n n 
C12 H221 DEX sing 112 n n 
C13 C14 DEX sing 113 n n 
C13 C17 DEX sing 114 n n 
C13 C18 DEX sing 115 n n 
C14 C15 DEX sing 116 n n 
C14 H14 DEX sing 117 n n 
C15 C16 DEX sing 118 n n 
C15 H511 DEX sing 119 n n 
C15 H521 DEX sing 120 n n 
C16 C17 DEX sing 121 n n 
C16 C22 DEX sing 122 n n 
C16 H16 DEX sing 123 n n 
C17 C20 DEX sing 124 n n 
C17 O3 DEX sing 125 n n 
C18 H811 DEX sing 126 n n 
C18 H821 DEX sing 127 n n 
C18 H831 DEX sing 128 n n 
C19 H911 DEX sing 129 n n 
C19 H921 DEX sing 130 n n 
C19 H931 DEX sing 131 n n 
C20 C21 DEX sing 132 n n 
C20 O4 DEX doub 133 n n 
C21 O5 DEX sing 134 n n 
C21 H112 DEX sing 135 n n 
C21 H122 DEX sing 136 n n 
C22 H212 DEX sing 137 n n 
C22 H222 DEX sing 138 n n 
C22 H232 DEX sing 139 n n 
O2 HO2 DEX sing 140 n n 
O3 H3 DEX sing 141 n n 
O5 H5 DEX sing 142 n n 
#
_atom_sites.entry_id                     4UDA 
_atom_sites.fract_transf_matrix[1][1]    0.013699 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 1984 1984 GOL GOL . 
D 4 DEX A 1 1985 1985 DEX DEX . 
E 5 HOH A 1 2001 2001 HOH HOH . 
E 5 HOH A 2 2002 2002 HOH HOH . 
E 5 HOH A 3 2003 2003 HOH HOH . 
E 5 HOH A 4 2004 2004 HOH HOH . 
E 5 HOH A 5 2005 2005 HOH HOH . 
E 5 HOH A 6 2006 2006 HOH HOH . 
E 5 HOH A 7 2007 2007 HOH HOH . 
E 5 HOH A 8 2008 2008 HOH HOH . 
E 5 HOH A 9 2009 2009 HOH HOH . 
E 5 HOH A 10 2010 2010 HOH HOH . 
E 5 HOH A 11 2011 2011 HOH HOH . 
E 5 HOH A 12 2012 2012 HOH HOH . 
E 5 HOH A 13 2013 2013 HOH HOH . 
E 5 HOH A 14 2014 2014 HOH HOH . 
E 5 HOH A 15 2015 2015 HOH HOH . 
E 5 HOH A 16 2016 2016 HOH HOH . 
E 5 HOH A 17 2017 2017 HOH HOH . 
E 5 HOH A 18 2018 2018 HOH HOH . 
E 5 HOH A 19 2019 2019 HOH HOH . 
E 5 HOH A 20 2020 2020 HOH HOH . 
E 5 HOH A 21 2021 2021 HOH HOH . 
E 5 HOH A 22 2022 2022 HOH HOH . 
E 5 HOH A 23 2023 2023 HOH HOH . 
E 5 HOH A 24 2024 2024 HOH HOH . 
E 5 HOH A 25 2025 2025 HOH HOH . 
E 5 HOH A 26 2026 2026 HOH HOH . 
E 5 HOH A 27 2027 2027 HOH HOH . 
E 5 HOH A 28 2028 2028 HOH HOH . 
E 5 HOH A 29 2029 2029 HOH HOH . 
E 5 HOH A 30 2030 2030 HOH HOH . 
E 5 HOH A 31 2031 2031 HOH HOH . 
E 5 HOH A 32 2032 2032 HOH HOH . 
E 5 HOH A 33 2033 2033 HOH HOH . 
E 5 HOH A 34 2034 2034 HOH HOH . 
E 5 HOH A 35 2035 2035 HOH HOH . 
E 5 HOH A 36 2036 2036 HOH HOH . 
E 5 HOH A 37 2037 2037 HOH HOH . 
E 5 HOH A 38 2038 2038 HOH HOH . 
E 5 HOH A 39 2039 2039 HOH HOH . 
E 5 HOH A 40 2040 2040 HOH HOH . 
E 5 HOH A 41 2041 2041 HOH HOH . 
E 5 HOH A 42 2042 2042 HOH HOH . 
E 5 HOH A 43 2043 2043 HOH HOH . 
E 5 HOH A 44 2044 2044 HOH HOH . 
E 5 HOH A 45 2045 2045 HOH HOH . 
E 5 HOH A 46 2046 2046 HOH HOH . 
E 5 HOH A 47 2047 2047 HOH HOH . 
E 5 HOH A 48 2048 2048 HOH HOH . 
E 5 HOH A 49 2049 2049 HOH HOH . 
E 5 HOH A 50 2050 2050 HOH HOH . 
E 5 HOH A 51 2051 2051 HOH HOH . 
E 5 HOH A 52 2052 2052 HOH HOH . 
E 5 HOH A 53 2053 2053 HOH HOH . 
E 5 HOH A 54 2054 2054 HOH HOH . 
E 5 HOH A 55 2055 2055 HOH HOH . 
E 5 HOH A 56 2056 2056 HOH HOH . 
E 5 HOH A 57 2057 2057 HOH HOH . 
E 5 HOH A 58 2058 2058 HOH HOH . 
E 5 HOH A 59 2059 2059 HOH HOH . 
E 5 HOH A 60 2060 2060 HOH HOH . 
E 5 HOH A 61 2061 2061 HOH HOH . 
E 5 HOH A 62 2062 2062 HOH HOH . 
E 5 HOH A 63 2063 2063 HOH HOH . 
E 5 HOH A 64 2064 2064 HOH HOH . 
E 5 HOH A 65 2065 2065 HOH HOH . 
E 5 HOH A 66 2066 2066 HOH HOH . 
E 5 HOH A 67 2067 2067 HOH HOH . 
E 5 HOH A 68 2068 2068 HOH HOH . 
E 5 HOH A 69 2069 2069 HOH HOH . 
E 5 HOH A 70 2070 2070 HOH HOH . 
E 5 HOH A 71 2071 2071 HOH HOH . 
E 5 HOH A 72 2072 2072 HOH HOH . 
E 5 HOH A 73 2073 2073 HOH HOH . 
E 5 HOH A 74 2074 2074 HOH HOH . 
E 5 HOH A 75 2075 2075 HOH HOH . 
E 5 HOH A 76 2076 2076 HOH HOH . 
E 5 HOH A 77 2077 2077 HOH HOH . 
E 5 HOH A 78 2078 2078 HOH HOH . 
E 5 HOH A 79 2079 2079 HOH HOH . 
E 5 HOH A 80 2080 2080 HOH HOH . 
E 5 HOH A 81 2081 2081 HOH HOH . 
E 5 HOH A 82 2082 2082 HOH HOH . 
E 5 HOH A 83 2083 2083 HOH HOH . 
E 5 HOH A 84 2084 2084 HOH HOH . 
E 5 HOH A 85 2085 2085 HOH HOH . 
E 5 HOH A 86 2086 2086 HOH HOH . 
E 5 HOH A 87 2087 2087 HOH HOH . 
E 5 HOH A 88 2088 2088 HOH HOH . 
E 5 HOH A 89 2089 2089 HOH HOH . 
E 5 HOH A 90 2090 2090 HOH HOH . 
E 5 HOH A 91 2091 2091 HOH HOH . 
E 5 HOH A 92 2092 2092 HOH HOH . 
E 5 HOH A 93 2093 2093 HOH HOH . 
E 5 HOH A 94 2094 2094 HOH HOH . 
E 5 HOH A 95 2095 2095 HOH HOH . 
E 5 HOH A 96 2096 2096 HOH HOH . 
E 5 HOH A 97 2097 2097 HOH HOH . 
E 5 HOH A 98 2098 2098 HOH HOH . 
E 5 HOH A 99 2099 2099 HOH HOH . 
F 5 HOH B 1 2001 2001 HOH HOH . 
F 5 HOH B 2 2002 2002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DEX . . . D 4 0.055 -15.119 1.398 1 20.51 ? C1 DEX 1985 A 1 
HETATM 2 C C2 DEX . . . D 4 1.391 -15.048 1.426 1 19.1 ? C2 DEX 1985 A 1 
HETATM 3 C C3 DEX . . . D 4 2.062 -14.238 0.393 1 19.52 ? C3 DEX 1985 A 1 
HETATM 4 C C4 DEX . . . D 4 1.26 -13.614 -0.696 1 19.2 ? C4 DEX 1985 A 1 
HETATM 5 C C5 DEX . . . D 4 -0.081 -13.738 -0.685 1 21.18 ? C5 DEX 1985 A 1 
HETATM 6 C C6 DEX . . . D 4 -0.882 -13.123 -1.808 1 20.97 ? C6 DEX 1985 A 1 
HETATM 7 C C7 DEX . . . D 4 -1.949 -14.068 -2.353 1 22.1 ? C7 DEX 1985 A 1 
HETATM 8 C C8 DEX . . . D 4 -2.723 -14.754 -1.231 1 23.3 ? C8 DEX 1985 A 1 
HETATM 9 C C9 DEX . . . D 4 -1.774 -15.479 -0.25 1 22.42 ? C9 DEX 1985 A 1 
HETATM 10 C C10 DEX . . . D 4 -0.845 -14.432 0.417 1 21.07 ? C10 DEX 1985 A 1 
HETATM 11 C C11 DEX . . . D 4 -2.487 -16.449 0.726 1 21.02 ? C11 DEX 1985 A 1 
HETATM 12 C C12 DEX . . . D 4 -3.579 -17.296 0.087 1 20.09 ? C12 DEX 1985 A 1 
HETATM 13 C C13 DEX . . . D 4 -4.593 -16.449 -0.686 1 23.49 ? C13 DEX 1985 A 1 
HETATM 14 C C14 DEX . . . D 4 -3.827 -15.675 -1.751 1 23.19 ? C14 DEX 1985 A 1 
HETATM 15 C C15 DEX . . . D 4 -4.885 -15.131 -2.683 1 22.42 ? C15 DEX 1985 A 1 
HETATM 16 C C16 DEX . . . D 4 -5.986 -16.173 -2.633 1 24.67 ? C16 DEX 1985 A 1 
HETATM 17 C C17 DEX . . . D 4 -5.58 -17.224 -1.575 1 24.71 ? C17 DEX 1985 A 1 
HETATM 18 C C18 DEX . . . D 4 -5.37 -15.543 0.289 1 23.73 ? C18 DEX 1985 A 1 
HETATM 19 C C19 DEX . . . D 4 -1.543 -13.333 1.229 1 20.57 ? C19 DEX 1985 A 1 
HETATM 20 C C20 DEX . . . D 4 -6.737 -17.825 -0.775 1 26.2 ? C20 DEX 1985 A 1 
HETATM 21 C C21 DEX . . . D 4 -6.522 -19.118 -0.02 1 23.47 ? C21 DEX 1985 A 1 
HETATM 22 C C22 DEX . . . D 4 -6.254 -16.666 -4.043 1 24.87 ? C22 DEX 1985 A 1 
HETATM 23 F F1 DEX . . . D 4 -1.001 -16.33 -1.011 1 21.73 ? F1 DEX 1985 A 1 
HETATM 24 O O1 DEX . . . D 4 3.281 -14.131 0.428 1 23.03 ? O1 DEX 1985 A 1 
HETATM 25 O O2 DEX . . . D 4 -3.027 -15.801 1.872 1 17.87 ? O2 DEX 1985 A 1 
HETATM 26 O O3 DEX . . . D 4 -4.943 -18.342 -2.21 1 22.99 ? O3 DEX 1985 A 1 
HETATM 27 O O4 DEX . . . D 4 -7.839 -17.305 -0.713 1 27.45 ? O4 DEX 1985 A 1 
HETATM 28 O O5 DEX . . . D 4 -7.611 -19.25 0.889 1 18.53 ? O5 DEX 1985 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           28 
#