data_4UDC # _model_server_result.job_id cMSkaKSWlwT7rPAAuZ7cgQ _model_server_result.datetime_utc '2024-10-10 23:31:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4udc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1778}' # _entry.id 4UDC # _exptl.entry_id 4UDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.461 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEXAMETHASONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UDC _cell.length_a 84.66 _cell.length_b 84.66 _cell.length_c 105.91 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H29 F O5' _chem_comp.formula_weight 392.461 _chem_comp.id DEX _chem_comp.mon_nstd_flag . _chem_comp.name DEXAMETHASONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 9A-FLUORO-16BETA-METHYLPREDNISOLONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEX doub 186 n n C1 C10 DEX sing 187 n n C1 H1 DEX sing 188 n n C2 C3 DEX sing 189 n n C2 H2 DEX sing 190 n n C3 C4 DEX sing 191 n n C3 O1 DEX doub 192 n n C4 C5 DEX doub 193 n n C4 H4 DEX sing 194 n n C5 C6 DEX sing 195 n n C5 C10 DEX sing 196 n n C6 C7 DEX sing 197 n n C6 H61 DEX sing 198 n n C6 H62 DEX sing 199 n n C7 C8 DEX sing 200 n n C7 H71 DEX sing 201 n n C7 H72 DEX sing 202 n n C8 C9 DEX sing 203 n n C8 C14 DEX sing 204 n n C8 H8 DEX sing 205 n n C9 C10 DEX sing 206 n n C9 C11 DEX sing 207 n n C9 F1 DEX sing 208 n n C10 C19 DEX sing 209 n n C11 C12 DEX sing 210 n n C11 O2 DEX sing 211 n n C11 H11 DEX sing 212 n n C12 C13 DEX sing 213 n n C12 H211 DEX sing 214 n n C12 H221 DEX sing 215 n n C13 C14 DEX sing 216 n n C13 C17 DEX sing 217 n n C13 C18 DEX sing 218 n n C14 C15 DEX sing 219 n n C14 H14 DEX sing 220 n n C15 C16 DEX sing 221 n n C15 H511 DEX sing 222 n n C15 H521 DEX sing 223 n n C16 C17 DEX sing 224 n n C16 C22 DEX sing 225 n n C16 H16 DEX sing 226 n n C17 C20 DEX sing 227 n n C17 O3 DEX sing 228 n n C18 H811 DEX sing 229 n n C18 H821 DEX sing 230 n n C18 H831 DEX sing 231 n n C19 H911 DEX sing 232 n n C19 H921 DEX sing 233 n n C19 H931 DEX sing 234 n n C20 C21 DEX sing 235 n n C20 O4 DEX doub 236 n n C21 O5 DEX sing 237 n n C21 H112 DEX sing 238 n n C21 H122 DEX sing 239 n n C22 H212 DEX sing 240 n n C22 H222 DEX sing 241 n n C22 H232 DEX sing 242 n n O2 HO2 DEX sing 243 n n O3 H3 DEX sing 244 n n O5 H5 DEX sing 245 n n # _atom_sites.entry_id 4UDC _atom_sites.fract_transf_matrix[1][1] 0.011812 _atom_sites.fract_transf_matrix[1][2] 0.00682 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CPS A 1 1777 1777 CPS CPS . D 4 DEX A 1 1778 1778 DEX DEX . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . F 5 HOH B 1 2001 2001 HOH HOH . F 5 HOH B 2 2002 2002 HOH HOH . F 5 HOH B 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEX . . . D 4 1.049 40.118 -7.466 1 33.4 ? C1 DEX 1778 A 1 HETATM 2 C C2 DEX . . . D 4 0.936 40.967 -6.455 1 33.43 ? C2 DEX 1778 A 1 HETATM 3 C C3 DEX . . . D 4 -0.392 41.247 -5.876 1 35.1 ? C3 DEX 1778 A 1 HETATM 4 C C4 DEX . . . D 4 -1.589 40.609 -6.463 1 32.73 ? C4 DEX 1778 A 1 HETATM 5 C C5 DEX . . . D 4 -1.45 39.719 -7.454 1 34.13 ? C5 DEX 1778 A 1 HETATM 6 C C6 DEX . . . D 4 -2.723 39.089 -8.03 1 33.2 ? C6 DEX 1778 A 1 HETATM 7 C C7 DEX . . . D 4 -2.784 39.329 -9.551 1 34.15 ? C7 DEX 1778 A 1 HETATM 8 C C8 DEX . . . D 4 -1.457 38.973 -10.271 1 33.89 ? C8 DEX 1778 A 1 HETATM 9 C C9 DEX . . . D 4 -0.254 39.73 -9.617 1 34.09 ? C9 DEX 1778 A 1 HETATM 10 C C10 DEX . . . D 4 -0.096 39.369 -8.094 1 32.77 ? C10 DEX 1778 A 1 HETATM 11 C C11 DEX . . . D 4 1.064 39.565 -10.432 1 34.52 ? C11 DEX 1778 A 1 HETATM 12 C C12 DEX . . . D 4 0.895 39.783 -11.96 1 33.48 ? C12 DEX 1778 A 1 HETATM 13 C C13 DEX . . . D 4 -0.244 38.953 -12.593 1 34.24 ? C13 DEX 1778 A 1 HETATM 14 C C14 DEX . . . D 4 -1.548 39.301 -11.772 1 33.89 ? C14 DEX 1778 A 1 HETATM 15 C C15 DEX . . . D 4 -2.675 38.685 -12.622 1 35.44 ? C15 DEX 1778 A 1 HETATM 16 C C16 DEX . . . D 4 -2.182 38.918 -14.084 1 35.12 ? C16 DEX 1778 A 1 HETATM 17 C C17 DEX . . . D 4 -0.695 39.386 -14.019 1 35.8 ? C17 DEX 1778 A 1 HETATM 18 C C18 DEX . . . D 4 0.119 37.433 -12.584 1 32.13 ? C18 DEX 1778 A 1 HETATM 19 C C19 DEX . . . D 4 0.242 37.886 -7.78 1 25.76 ? C19 DEX 1778 A 1 HETATM 20 C C20 DEX . . . D 4 0.187 38.81 -15.131 1 35.76 ? C20 DEX 1778 A 1 HETATM 21 C C21 DEX . . . D 4 1.535 39.421 -15.434 1 35.52 ? C21 DEX 1778 A 1 HETATM 22 C C22 DEX . . . D 4 -3.098 39.926 -14.771 1 34.29 ? C22 DEX 1778 A 1 HETATM 23 F F1 DEX . . . D 4 -0.577 41.091 -9.664 1 36.57 ? F1 DEX 1778 A 1 HETATM 24 O O1 DEX . . . D 4 -0.478 41.974 -4.905 1 39.49 ? O1 DEX 1778 A 1 HETATM 25 O O2 DEX . . . D 4 1.689 38.298 -10.213 1 35.91 ? O2 DEX 1778 A 1 HETATM 26 O O3 DEX . . . D 4 -0.681 40.815 -14.192 1 38.27 ? O3 DEX 1778 A 1 HETATM 27 O O4 DEX . . . D 4 -0.157 37.869 -15.807 1 37.29 ? O4 DEX 1778 A 1 HETATM 28 O O5 DEX . . . D 4 2.356 38.523 -16.169 1 35.99 ? O5 DEX 1778 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #