data_4UG5
#
_model_server_result.job_id            '_dndbUP6Zsy_FAkuMJFxeg' 
_model_server_result.datetime_utc      '2024-11-22 11:45:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ug5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":901}' 
#
_entry.id    4UG5 
#
_exptl.entry_id    4UG5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4UG5 
_cell.length_a            80.29 
_cell.length_b            94.92 
_cell.length_c            61.2 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UG5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 162 n n 
CHA C4D HEM doub 163 n n 
CHA HHA HEM sing 164 n n 
CHB C4A HEM sing 165 n n 
CHB C1B HEM doub 166 n n 
CHB HHB HEM sing 167 n n 
CHC C4B HEM sing 168 n n 
CHC C1C HEM doub 169 n n 
CHC HHC HEM sing 170 n n 
CHD C4C HEM doub 171 n n 
CHD C1D HEM sing 172 n n 
CHD HHD HEM sing 173 n n 
C1A C2A HEM doub 174 n y 
C1A NA HEM sing 175 n y 
C2A C3A HEM sing 176 n y 
C2A CAA HEM sing 177 n n 
C3A C4A HEM doub 178 n y 
C3A CMA HEM sing 179 n n 
C4A NA HEM sing 180 n y 
CMA HMA HEM sing 181 n n 
CMA HMAA HEM sing 182 n n 
CMA HMAB HEM sing 183 n n 
CAA CBA HEM sing 184 n n 
CAA HAA HEM sing 185 n n 
CAA HAAA HEM sing 186 n n 
CBA CGA HEM sing 187 n n 
CBA HBA HEM sing 188 n n 
CBA HBAA HEM sing 189 n n 
CGA O1A HEM doub 190 n n 
CGA O2A HEM sing 191 n n 
C1B C2B HEM sing 192 n n 
C1B NB HEM sing 193 n n 
C2B C3B HEM doub 194 n n 
C2B CMB HEM sing 195 n n 
C3B C4B HEM sing 196 n n 
C3B CAB HEM sing 197 n n 
C4B NB HEM doub 198 n n 
CMB HMB HEM sing 199 n n 
CMB HMBA HEM sing 200 n n 
CMB HMBB HEM sing 201 n n 
CAB CBB HEM doub 202 n n 
CAB HAB HEM sing 203 n n 
CBB HBB HEM sing 204 n n 
CBB HBBA HEM sing 205 n n 
C1C C2C HEM sing 206 n y 
C1C NC HEM sing 207 n y 
C2C C3C HEM doub 208 n y 
C2C CMC HEM sing 209 n n 
C3C C4C HEM sing 210 n y 
C3C CAC HEM sing 211 n n 
C4C NC HEM sing 212 n y 
CMC HMC HEM sing 213 n n 
CMC HMCA HEM sing 214 n n 
CMC HMCB HEM sing 215 n n 
CAC CBC HEM doub 216 n n 
CAC HAC HEM sing 217 n n 
CBC HBC HEM sing 218 n n 
CBC HBCA HEM sing 219 n n 
C1D C2D HEM sing 220 n n 
C1D ND HEM doub 221 n n 
C2D C3D HEM doub 222 n n 
C2D CMD HEM sing 223 n n 
C3D C4D HEM sing 224 n n 
C3D CAD HEM sing 225 n n 
C4D ND HEM sing 226 n n 
CMD HMD HEM sing 227 n n 
CMD HMDA HEM sing 228 n n 
CMD HMDB HEM sing 229 n n 
CAD CBD HEM sing 230 n n 
CAD HAD HEM sing 231 n n 
CAD HADA HEM sing 232 n n 
CBD CGD HEM sing 233 n n 
CBD HBD HEM sing 234 n n 
CBD HBDA HEM sing 235 n n 
CGD O1D HEM doub 236 n n 
CGD O2D HEM sing 237 n n 
O2A H2A HEM sing 238 n n 
O2D H2D HEM sing 239 n n 
FE NA HEM sing 240 n n 
FE NB HEM sing 241 n n 
FE NC HEM sing 242 n n 
FE ND HEM sing 243 n n 
#
_atom_sites.entry_id                     4UG5 
_atom_sites.fract_transf_matrix[1][1]    0.012455 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010535 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01634 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 901 901 HEM HEM . 
C 3 H4B A 1 902 902 H4B H4B . 
D 4 CL A 1 903 903 CL CL . 
E 5 XFK A 1 904 904 XFK XFK . 
F 6 HOH A 1 2001 2001 HOH HOH . 
F 6 HOH A 2 2002 2002 HOH HOH . 
F 6 HOH A 3 2003 2003 HOH HOH . 
F 6 HOH A 4 2004 2004 HOH HOH . 
F 6 HOH A 5 2005 2005 HOH HOH . 
F 6 HOH A 6 2006 2006 HOH HOH . 
F 6 HOH A 7 2007 2007 HOH HOH . 
F 6 HOH A 8 2008 2008 HOH HOH . 
F 6 HOH A 9 2009 2009 HOH HOH . 
F 6 HOH A 10 2010 2010 HOH HOH . 
F 6 HOH A 11 2011 2011 HOH HOH . 
F 6 HOH A 12 2012 2012 HOH HOH . 
F 6 HOH A 13 2013 2013 HOH HOH . 
F 6 HOH A 14 2014 2014 HOH HOH . 
F 6 HOH A 15 2015 2015 HOH HOH . 
F 6 HOH A 16 2016 2016 HOH HOH . 
F 6 HOH A 17 2017 2017 HOH HOH . 
F 6 HOH A 18 2018 2018 HOH HOH . 
F 6 HOH A 19 2019 2019 HOH HOH . 
F 6 HOH A 20 2020 2020 HOH HOH . 
F 6 HOH A 21 2021 2021 HOH HOH . 
F 6 HOH A 22 2022 2022 HOH HOH . 
F 6 HOH A 23 2023 2023 HOH HOH . 
F 6 HOH A 24 2024 2024 HOH HOH . 
F 6 HOH A 25 2025 2025 HOH HOH . 
F 6 HOH A 26 2026 2026 HOH HOH . 
F 6 HOH A 27 2027 2027 HOH HOH . 
F 6 HOH A 28 2028 2028 HOH HOH . 
F 6 HOH A 29 2029 2029 HOH HOH . 
F 6 HOH A 30 2030 2030 HOH HOH . 
F 6 HOH A 31 2031 2031 HOH HOH . 
F 6 HOH A 32 2032 2032 HOH HOH . 
F 6 HOH A 33 2033 2033 HOH HOH . 
F 6 HOH A 34 2034 2034 HOH HOH . 
F 6 HOH A 35 2035 2035 HOH HOH . 
F 6 HOH A 36 2036 2036 HOH HOH . 
F 6 HOH A 37 2037 2037 HOH HOH . 
F 6 HOH A 38 2038 2038 HOH HOH . 
F 6 HOH A 39 2039 2039 HOH HOH . 
F 6 HOH A 40 2040 2040 HOH HOH . 
F 6 HOH A 41 2041 2041 HOH HOH . 
F 6 HOH A 42 2042 2042 HOH HOH . 
F 6 HOH A 43 2043 2043 HOH HOH . 
F 6 HOH A 44 2044 2044 HOH HOH . 
F 6 HOH A 45 2045 2045 HOH HOH . 
F 6 HOH A 46 2046 2046 HOH HOH . 
F 6 HOH A 47 2047 2047 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 1.846 14.661 20.378 1 18.28 ? CHA HEM 901 A 1 
HETATM 2 C CHB HEM . . . B 2 -0.816 15.551 24.315 1 25.68 ? CHB HEM 901 A 1 
HETATM 3 C CHC HEM . . . B 2 -1.326 20.17 22.838 1 20.52 ? CHC HEM 901 A 1 
HETATM 4 C CHD HEM . . . B 2 0.577 18.984 18.564 1 26.3 ? CHD HEM 901 A 1 
HETATM 5 C C1A HEM . . . B 2 1.232 14.595 21.599 1 24.85 ? C1A HEM 901 A 1 
HETATM 6 C C2A HEM . . . B 2 1.44 13.527 22.492 1 28.83 ? C2A HEM 901 A 1 
HETATM 7 C C3A HEM . . . B 2 0.693 13.768 23.593 1 23.68 ? C3A HEM 901 A 1 
HETATM 8 C C4A HEM . . . B 2 0.024 14.987 23.39 1 23.76 ? C4A HEM 901 A 1 
HETATM 9 C CMA HEM . . . B 2 0.594 12.9 24.819 1 16.43 ? CMA HEM 901 A 1 
HETATM 10 C CAA HEM . . . B 2 2.317 12.323 22.258 1 26.92 ? CAA HEM 901 A 1 
HETATM 11 C CBA HEM . . . B 2 3.629 12.416 23.039 1 37.07 ? CBA HEM 901 A 1 
HETATM 12 C CGA HEM . . . B 2 4.274 11.055 23.073 1 46.94 ? CGA HEM 901 A 1 
HETATM 13 O O1A HEM . . . B 2 3.811 10.161 23.817 1 29.21 ? O1A HEM 901 A 1 
HETATM 14 O O2A HEM . . . B 2 5.27 10.813 22.355 1 60.42 ? O2A HEM 901 A 1 
HETATM 15 C C1B HEM . . . B 2 -1.101 16.911 24.247 1 28.7 ? C1B HEM 901 A 1 
HETATM 16 C C2B HEM . . . B 2 -1.657 17.612 25.348 1 15.68 ? C2B HEM 901 A 1 
HETATM 17 C C3B HEM . . . B 2 -1.812 18.907 24.962 1 16.85 ? C3B HEM 901 A 1 
HETATM 18 C C4B HEM . . . B 2 -1.316 18.977 23.568 1 18.08 ? C4B HEM 901 A 1 
HETATM 19 C CMB HEM . . . B 2 -2.015 17.03 26.69 1 13.64 ? CMB HEM 901 A 1 
HETATM 20 C CAB HEM . . . B 2 -2.354 20.016 25.771 1 24.32 ? CAB HEM 901 A 1 
HETATM 21 C CBB HEM . . . B 2 -3.397 20.724 25.346 1 18.88 ? CBB HEM 901 A 1 
HETATM 22 C C1C HEM . . . B 2 -0.816 20.285 21.554 1 15.97 ? C1C HEM 901 A 1 
HETATM 23 C C2C HEM . . . B 2 -0.636 21.479 20.837 1 18.93 ? C2C HEM 901 A 1 
HETATM 24 C C3C HEM . . . B 2 -0.092 21.146 19.603 1 18.64 ? C3C HEM 901 A 1 
HETATM 25 C C4C HEM . . . B 2 0.058 19.729 19.59 1 23.22 ? C4C HEM 901 A 1 
HETATM 26 C CMC HEM . . . B 2 -0.984 22.859 21.333 1 29.54 ? CMC HEM 901 A 1 
HETATM 27 C CAC HEM . . . B 2 0.273 22.073 18.51 1 13.81 ? CAC HEM 901 A 1 
HETATM 28 C CBC HEM . . . B 2 -0.59 22.941 17.992 1 13.8 ? CBC HEM 901 A 1 
HETATM 29 C C1D HEM . . . B 2 1.129 17.719 18.792 1 18.33 ? C1D HEM 901 A 1 
HETATM 30 C C2D HEM . . . B 2 2.038 17.118 17.814 1 14.98 ? C2D HEM 901 A 1 
HETATM 31 C C3D HEM . . . B 2 2.388 15.923 18.313 1 14.04 ? C3D HEM 901 A 1 
HETATM 32 C C4D HEM . . . B 2 1.703 15.793 19.601 1 21.94 ? C4D HEM 901 A 1 
HETATM 33 C CMD HEM . . . B 2 2.482 17.723 16.507 1 13.16 ? CMD HEM 901 A 1 
HETATM 34 C CAD HEM . . . B 2 3.312 14.923 17.677 1 21.28 ? CAD HEM 901 A 1 
HETATM 35 C CBD HEM . . . B 2 4.754 15.362 17.928 1 25.33 ? CBD HEM 901 A 1 
HETATM 36 C CGD HEM . . . B 2 5.694 14.306 17.417 1 31.61 ? CGD HEM 901 A 1 
HETATM 37 O O1D HEM . . . B 2 6.191 13.491 18.218 1 35.91 ? O1D HEM 901 A 1 
HETATM 38 O O2D HEM . . . B 2 5.973 14.237 16.2 1 36.95 ? O2D HEM 901 A 1 
HETATM 39 N NA HEM . . . B 2 0.336 15.492 22.149 1 27.71 ? NA HEM 901 A 1 
HETATM 40 N NB HEM . . . B 2 -0.882 17.747 23.223 1 20.24 ? NB HEM 901 A 1 
HETATM 41 N NC HEM . . . B 2 -0.4 19.242 20.781 1 24.2 ? NC HEM 901 A 1 
HETATM 42 N ND HEM . . . B 2 0.989 16.899 19.855 1 19.81 ? ND HEM 901 A 1 
HETATM 43 FE FE HEM . . . B 2 -0.117 17.254 21.321 1 27.03 ? FE HEM 901 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#