data_4UG5
#
_model_server_result.job_id            Hzs_uc1eY47k2p3b2fr8TQ 
_model_server_result.datetime_utc      '2024-11-04 22:37:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ug5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":904}' 
#
_entry.id    4UG5 
#
_exptl.entry_id    4UG5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.457 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-(2-{5-[2-(2-amino-6-methylpyridin-4-yl)ethyl]pyridin-3-yl}ethyl)-4-methylpyridin-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4UG5 
_cell.length_a            80.29 
_cell.length_b            94.92 
_cell.length_c            61.2 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UG5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H25 N5' 
_chem_comp.formula_weight    347.457 
_chem_comp.id                XFK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-(2-{5-[2-(2-amino-6-methylpyridin-4-yl)ethyl]pyridin-3-yl}ethyl)-4-methylpyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N01 C06 XFK doub 491 n y 
N01 C02 XFK sing 492 n y 
N02 C02 XFK sing 493 n n 
C02 C03 XFK doub 494 n y 
N02 HN02 XFK sing 495 n n 
N02 HN0A XFK sing 496 n n 
C03 C04 XFK sing 497 n y 
C03 H03 XFK sing 498 n n 
C05 C04 XFK doub 499 n y 
C04 C07 XFK sing 500 n n 
C06 C05 XFK sing 501 n y 
C05 H05 XFK sing 502 n n 
C08 C06 XFK sing 503 n n 
C07 H07 XFK sing 504 n n 
C07 H07A XFK sing 505 n n 
C07 H07B XFK sing 506 n n 
C08 C09 XFK sing 507 n n 
C08 H08 XFK sing 508 n n 
C08 H08A XFK sing 509 n n 
C13 C09 XFK sing 510 n n 
C09 H09 XFK sing 511 n n 
C09 H09A XFK sing 512 n n 
C16 N11 XFK doub 513 n y 
N11 C12 XFK sing 514 n y 
C12 C13 XFK doub 515 n y 
C12 H12 XFK sing 516 n n 
C14 C13 XFK sing 517 n y 
C15 C14 XFK doub 518 n y 
C14 H14 XFK sing 519 n n 
C17 C15 XFK sing 520 n n 
C16 C15 XFK sing 521 n y 
C16 H16 XFK sing 522 n n 
C17 C18 XFK sing 523 n n 
C17 H17 XFK sing 524 n n 
C17 H17A XFK sing 525 n n 
C26 C18 XFK sing 526 n n 
C18 H18 XFK sing 527 n n 
C18 H18A XFK sing 528 n n 
C22 C21 XFK doub 529 n y 
C26 C21 XFK sing 530 n y 
C21 H21 XFK sing 531 n n 
N23 C22 XFK sing 532 n y 
C22 N22 XFK sing 533 n n 
N22 HN22 XFK sing 534 n n 
N22 HN2A XFK sing 535 n n 
C24 N23 XFK doub 536 n y 
C27 C24 XFK sing 537 n n 
C24 C25 XFK sing 538 n y 
C25 C26 XFK doub 539 n y 
C25 H25 XFK sing 540 n n 
C27 H27 XFK sing 541 n n 
C27 H27A XFK sing 542 n n 
C27 H27B XFK sing 543 n n 
#
_atom_sites.entry_id                     4UG5 
_atom_sites.fract_transf_matrix[1][1]    0.012455 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010535 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01634 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 901 901 HEM HEM . 
C 3 H4B A 1 902 902 H4B H4B . 
D 4 CL A 1 903 903 CL CL . 
E 5 XFK A 1 904 904 XFK XFK . 
F 6 HOH A 1 2001 2001 HOH HOH . 
F 6 HOH A 2 2002 2002 HOH HOH . 
F 6 HOH A 3 2003 2003 HOH HOH . 
F 6 HOH A 4 2004 2004 HOH HOH . 
F 6 HOH A 5 2005 2005 HOH HOH . 
F 6 HOH A 6 2006 2006 HOH HOH . 
F 6 HOH A 7 2007 2007 HOH HOH . 
F 6 HOH A 8 2008 2008 HOH HOH . 
F 6 HOH A 9 2009 2009 HOH HOH . 
F 6 HOH A 10 2010 2010 HOH HOH . 
F 6 HOH A 11 2011 2011 HOH HOH . 
F 6 HOH A 12 2012 2012 HOH HOH . 
F 6 HOH A 13 2013 2013 HOH HOH . 
F 6 HOH A 14 2014 2014 HOH HOH . 
F 6 HOH A 15 2015 2015 HOH HOH . 
F 6 HOH A 16 2016 2016 HOH HOH . 
F 6 HOH A 17 2017 2017 HOH HOH . 
F 6 HOH A 18 2018 2018 HOH HOH . 
F 6 HOH A 19 2019 2019 HOH HOH . 
F 6 HOH A 20 2020 2020 HOH HOH . 
F 6 HOH A 21 2021 2021 HOH HOH . 
F 6 HOH A 22 2022 2022 HOH HOH . 
F 6 HOH A 23 2023 2023 HOH HOH . 
F 6 HOH A 24 2024 2024 HOH HOH . 
F 6 HOH A 25 2025 2025 HOH HOH . 
F 6 HOH A 26 2026 2026 HOH HOH . 
F 6 HOH A 27 2027 2027 HOH HOH . 
F 6 HOH A 28 2028 2028 HOH HOH . 
F 6 HOH A 29 2029 2029 HOH HOH . 
F 6 HOH A 30 2030 2030 HOH HOH . 
F 6 HOH A 31 2031 2031 HOH HOH . 
F 6 HOH A 32 2032 2032 HOH HOH . 
F 6 HOH A 33 2033 2033 HOH HOH . 
F 6 HOH A 34 2034 2034 HOH HOH . 
F 6 HOH A 35 2035 2035 HOH HOH . 
F 6 HOH A 36 2036 2036 HOH HOH . 
F 6 HOH A 37 2037 2037 HOH HOH . 
F 6 HOH A 38 2038 2038 HOH HOH . 
F 6 HOH A 39 2039 2039 HOH HOH . 
F 6 HOH A 40 2040 2040 HOH HOH . 
F 6 HOH A 41 2041 2041 HOH HOH . 
F 6 HOH A 42 2042 2042 HOH HOH . 
F 6 HOH A 43 2043 2043 HOH HOH . 
F 6 HOH A 44 2044 2044 HOH HOH . 
F 6 HOH A 45 2045 2045 HOH HOH . 
F 6 HOH A 46 2046 2046 HOH HOH . 
F 6 HOH A 47 2047 2047 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N01 XFK . . . E 5 3.359 16.519 24.249 1 19.78 ? N01 XFK 904 A 1 
HETATM 2 C C02 XFK . . . E 5 2.509 17.41 24.808 1 16.63 ? C02 XFK 904 A 1 
HETATM 3 N N02 XFK . . . E 5 1.944 17.142 26.011 1 8.48 ? N02 XFK 904 A 1 
HETATM 4 C C03 XFK . . . E 5 2.212 18.6 24.154 1 14.47 ? C03 XFK 904 A 1 
HETATM 5 C C04 XFK . . . E 5 2.799 18.862 22.924 1 25.59 ? C04 XFK 904 A 1 
HETATM 6 C C05 XFK . . . E 5 3.667 17.933 22.367 1 28.46 ? C05 XFK 904 A 1 
HETATM 7 C C06 XFK . . . E 5 3.935 16.754 23.048 1 28.08 ? C06 XFK 904 A 1 
HETATM 8 C C07 XFK . . . E 5 2.499 20.142 22.192 1 26.22 ? C07 XFK 904 A 1 
HETATM 9 C C08 XFK . . . E 5 4.892 15.744 22.456 1 25.68 ? C08 XFK 904 A 1 
HETATM 10 C C09 XFK . . . E 5 6.186 15.92 23.241 1 28.85 ? C09 XFK 904 A 1 
HETATM 11 N N11 XFK . . . E 5 9.158 13.696 23.616 1 28.79 ? N11 XFK 904 A 1 
HETATM 12 C C12 XFK . . . E 5 8.173 14.564 23.868 1 35.35 ? C12 XFK 904 A 1 
HETATM 13 C C13 XFK . . . E 5 7.273 14.937 22.879 1 32.39 ? C13 XFK 904 A 1 
HETATM 14 C C14 XFK . . . E 5 7.397 14.399 21.605 1 30.66 ? C14 XFK 904 A 1 
HETATM 15 C C15 XFK . . . E 5 8.436 13.505 21.369 1 36.13 ? C15 XFK 904 A 1 
HETATM 16 C C16 XFK . . . E 5 9.305 13.165 22.399 1 30.36 ? C16 XFK 904 A 1 
HETATM 17 C C17 XFK . . . E 5 8.617 12.892 20 1 37.73 ? C17 XFK 904 A 1 
HETATM 18 C C18 XFK . . . E 5 10.028 13.166 19.49 1 28.9 ? C18 XFK 904 A 1 
HETATM 19 C C21 XFK . . . E 5 9.047 12.849 17.189 1 41.55 ? C21 XFK 904 A 1 
HETATM 20 C C22 XFK . . . E 5 9.168 12.438 15.866 1 43.9 ? C22 XFK 904 A 1 
HETATM 21 N N22 XFK . . . E 5 8.111 12.554 15.024 1 25.12 ? N22 XFK 904 A 1 
HETATM 22 N N23 XFK . . . E 5 10.334 11.925 15.415 1 57.9 ? N23 XFK 904 A 1 
HETATM 23 C C24 XFK . . . E 5 11.403 11.799 16.233 1 48.71 ? C24 XFK 904 A 1 
HETATM 24 C C25 XFK . . . E 5 11.322 12.2 17.563 1 40.94 ? C25 XFK 904 A 1 
HETATM 25 C C26 XFK . . . E 5 10.132 12.727 18.047 1 32.64 ? C26 XFK 904 A 1 
HETATM 26 C C27 XFK . . . E 5 12.691 11.224 15.704 1 37.14 ? C27 XFK 904 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#