data_4UGE # _model_server_result.job_id X7OqTBsel9ZSmnKmv80wiA _model_server_result.datetime_utc '2024-11-05 08:23:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 4UGE # _exptl.entry_id 4UGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UGE _cell.length_a 80.56 _cell.length_b 94.58 _cell.length_c 62.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 162 n n CHA C4D HEM doub 163 n n CHA HHA HEM sing 164 n n CHB C4A HEM sing 165 n n CHB C1B HEM doub 166 n n CHB HHB HEM sing 167 n n CHC C4B HEM sing 168 n n CHC C1C HEM doub 169 n n CHC HHC HEM sing 170 n n CHD C4C HEM doub 171 n n CHD C1D HEM sing 172 n n CHD HHD HEM sing 173 n n C1A C2A HEM doub 174 n y C1A NA HEM sing 175 n y C2A C3A HEM sing 176 n y C2A CAA HEM sing 177 n n C3A C4A HEM doub 178 n y C3A CMA HEM sing 179 n n C4A NA HEM sing 180 n y CMA HMA HEM sing 181 n n CMA HMAA HEM sing 182 n n CMA HMAB HEM sing 183 n n CAA CBA HEM sing 184 n n CAA HAA HEM sing 185 n n CAA HAAA HEM sing 186 n n CBA CGA HEM sing 187 n n CBA HBA HEM sing 188 n n CBA HBAA HEM sing 189 n n CGA O1A HEM doub 190 n n CGA O2A HEM sing 191 n n C1B C2B HEM sing 192 n n C1B NB HEM sing 193 n n C2B C3B HEM doub 194 n n C2B CMB HEM sing 195 n n C3B C4B HEM sing 196 n n C3B CAB HEM sing 197 n n C4B NB HEM doub 198 n n CMB HMB HEM sing 199 n n CMB HMBA HEM sing 200 n n CMB HMBB HEM sing 201 n n CAB CBB HEM doub 202 n n CAB HAB HEM sing 203 n n CBB HBB HEM sing 204 n n CBB HBBA HEM sing 205 n n C1C C2C HEM sing 206 n y C1C NC HEM sing 207 n y C2C C3C HEM doub 208 n y C2C CMC HEM sing 209 n n C3C C4C HEM sing 210 n y C3C CAC HEM sing 211 n n C4C NC HEM sing 212 n y CMC HMC HEM sing 213 n n CMC HMCA HEM sing 214 n n CMC HMCB HEM sing 215 n n CAC CBC HEM doub 216 n n CAC HAC HEM sing 217 n n CBC HBC HEM sing 218 n n CBC HBCA HEM sing 219 n n C1D C2D HEM sing 220 n n C1D ND HEM doub 221 n n C2D C3D HEM doub 222 n n C2D CMD HEM sing 223 n n C3D C4D HEM sing 224 n n C3D CAD HEM sing 225 n n C4D ND HEM sing 226 n n CMD HMD HEM sing 227 n n CMD HMDA HEM sing 228 n n CMD HMDB HEM sing 229 n n CAD CBD HEM sing 230 n n CAD HAD HEM sing 231 n n CAD HADA HEM sing 232 n n CBD CGD HEM sing 233 n n CBD HBD HEM sing 234 n n CBD HBDA HEM sing 235 n n CGD O1D HEM doub 236 n n CGD O2D HEM sing 237 n n O2A H2A HEM sing 238 n n O2D H2D HEM sing 239 n n FE NA HEM sing 240 n n FE NB HEM sing 241 n n FE NC HEM sing 242 n n FE ND HEM sing 243 n n # _atom_sites.entry_id 4UGE _atom_sites.fract_transf_matrix[1][1] 0.012413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 901 HEM HEM . C 3 H4B A 1 902 902 H4B H4B . D 4 CL A 1 903 903 CL CL . E 5 Q15 A 1 904 904 Q15 Q15 . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . F 6 HOH A 45 2045 2045 HOH HOH . F 6 HOH A 46 2046 2046 HOH HOH . F 6 HOH A 47 2047 2047 HOH HOH . F 6 HOH A 48 2048 2048 HOH HOH . F 6 HOH A 49 2049 2049 HOH HOH . F 6 HOH A 50 2050 2050 HOH HOH . F 6 HOH A 51 2051 2051 HOH HOH . F 6 HOH A 52 2052 2052 HOH HOH . F 6 HOH A 53 2053 2053 HOH HOH . F 6 HOH A 54 2054 2054 HOH HOH . F 6 HOH A 55 2055 2055 HOH HOH . F 6 HOH A 56 2056 2056 HOH HOH . F 6 HOH A 57 2057 2057 HOH HOH . F 6 HOH A 58 2058 2058 HOH HOH . F 6 HOH A 59 2059 2059 HOH HOH . F 6 HOH A 60 2060 2060 HOH HOH . F 6 HOH A 61 2061 2061 HOH HOH . F 6 HOH A 62 2062 2062 HOH HOH . F 6 HOH A 63 2063 2063 HOH HOH . F 6 HOH A 64 2064 2064 HOH HOH . F 6 HOH A 65 2065 2065 HOH HOH . F 6 HOH A 66 2066 2066 HOH HOH . F 6 HOH A 67 2067 2067 HOH HOH . F 6 HOH A 68 2068 2068 HOH HOH . F 6 HOH A 69 2069 2069 HOH HOH . F 6 HOH A 70 2070 2070 HOH HOH . F 6 HOH A 71 2071 2071 HOH HOH . F 6 HOH A 72 2072 2072 HOH HOH . F 6 HOH A 73 2073 2073 HOH HOH . F 6 HOH A 74 2074 2074 HOH HOH . F 6 HOH A 75 2075 2075 HOH HOH . F 6 HOH A 76 2076 2076 HOH HOH . F 6 HOH A 77 2077 2077 HOH HOH . F 6 HOH A 78 2078 2078 HOH HOH . F 6 HOH A 79 2079 2079 HOH HOH . F 6 HOH A 80 2080 2080 HOH HOH . F 6 HOH A 81 2081 2081 HOH HOH . F 6 HOH A 82 2082 2082 HOH HOH . F 6 HOH A 83 2083 2083 HOH HOH . F 6 HOH A 84 2084 2084 HOH HOH . F 6 HOH A 85 2085 2085 HOH HOH . F 6 HOH A 86 2086 2086 HOH HOH . F 6 HOH A 87 2087 2087 HOH HOH . F 6 HOH A 88 2088 2088 HOH HOH . F 6 HOH A 89 2089 2089 HOH HOH . F 6 HOH A 90 2090 2090 HOH HOH . F 6 HOH A 91 2091 2091 HOH HOH . F 6 HOH A 92 2092 2092 HOH HOH . F 6 HOH A 93 2093 2093 HOH HOH . F 6 HOH A 94 2094 2094 HOH HOH . F 6 HOH A 95 2095 2095 HOH HOH . F 6 HOH A 96 2096 2096 HOH HOH . F 6 HOH A 97 2097 2097 HOH HOH . F 6 HOH A 98 2098 2098 HOH HOH . F 6 HOH A 99 2099 2099 HOH HOH . F 6 HOH A 100 2100 2100 HOH HOH . F 6 HOH A 101 2101 2101 HOH HOH . F 6 HOH A 102 2102 2102 HOH HOH . F 6 HOH A 103 2103 2103 HOH HOH . F 6 HOH A 104 2104 2104 HOH HOH . F 6 HOH A 105 2105 2105 HOH HOH . F 6 HOH A 106 2106 2106 HOH HOH . F 6 HOH A 107 2107 2107 HOH HOH . F 6 HOH A 108 2108 2108 HOH HOH . F 6 HOH A 109 2109 2109 HOH HOH . F 6 HOH A 110 2110 2110 HOH HOH . F 6 HOH A 111 2111 2111 HOH HOH . F 6 HOH A 112 2112 2112 HOH HOH . F 6 HOH A 113 2113 2113 HOH HOH . F 6 HOH A 114 2114 2114 HOH HOH . F 6 HOH A 115 2115 2115 HOH HOH . F 6 HOH A 116 2116 2116 HOH HOH . F 6 HOH A 117 2117 2117 HOH HOH . F 6 HOH A 118 2118 2118 HOH HOH . F 6 HOH A 119 2119 2119 HOH HOH . F 6 HOH A 120 2120 2120 HOH HOH . F 6 HOH A 121 2121 2121 HOH HOH . F 6 HOH A 122 2122 2122 HOH HOH . F 6 HOH A 123 2123 2123 HOH HOH . F 6 HOH A 124 2124 2124 HOH HOH . F 6 HOH A 125 2125 2125 HOH HOH . F 6 HOH A 126 2126 2126 HOH HOH . F 6 HOH A 127 2127 2127 HOH HOH . F 6 HOH A 128 2128 2128 HOH HOH . F 6 HOH A 129 2129 2129 HOH HOH . F 6 HOH A 130 2130 2130 HOH HOH . F 6 HOH A 131 2131 2131 HOH HOH . F 6 HOH A 132 2132 2132 HOH HOH . F 6 HOH A 133 2133 2133 HOH HOH . F 6 HOH A 134 2134 2134 HOH HOH . F 6 HOH A 135 2135 2135 HOH HOH . F 6 HOH A 136 2136 2136 HOH HOH . F 6 HOH A 137 2137 2137 HOH HOH . F 6 HOH A 138 2138 2138 HOH HOH . F 6 HOH A 139 2139 2139 HOH HOH . F 6 HOH A 140 2140 2140 HOH HOH . F 6 HOH A 141 2141 2141 HOH HOH . F 6 HOH A 142 2142 2142 HOH HOH . F 6 HOH A 143 2143 2143 HOH HOH . F 6 HOH A 144 2144 2144 HOH HOH . F 6 HOH A 145 2145 2145 HOH HOH . F 6 HOH A 146 2146 2146 HOH HOH . F 6 HOH A 147 2147 2147 HOH HOH . F 6 HOH A 148 2148 2148 HOH HOH . F 6 HOH A 149 2149 2149 HOH HOH . F 6 HOH A 150 2150 2150 HOH HOH . F 6 HOH A 151 2151 2151 HOH HOH . F 6 HOH A 152 2152 2152 HOH HOH . F 6 HOH A 153 2153 2153 HOH HOH . F 6 HOH A 154 2154 2154 HOH HOH . F 6 HOH A 155 2155 2155 HOH HOH . F 6 HOH A 156 2156 2156 HOH HOH . F 6 HOH A 157 2157 2157 HOH HOH . F 6 HOH A 158 2158 2158 HOH HOH . F 6 HOH A 159 2159 2159 HOH HOH . F 6 HOH A 160 2160 2160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 1.944 14.718 21.851 1 21.12 ? CHA HEM 901 A 1 HETATM 2 C CHB HEM . . . B 2 -1.013 15.591 25.574 1 20 ? CHB HEM 901 A 1 HETATM 3 C CHC HEM . . . B 2 -1.372 20.211 24.048 1 19.29 ? CHC HEM 901 A 1 HETATM 4 C CHD HEM . . . B 2 0.57 18.904 19.821 1 24.45 ? CHD HEM 901 A 1 HETATM 5 C C1A HEM . . . B 2 1.276 14.67 23.046 1 23.5 ? C1A HEM 901 A 1 HETATM 6 C C2A HEM . . . B 2 1.538 13.69 24.025 1 23.55 ? C2A HEM 901 A 1 HETATM 7 C C3A HEM . . . B 2 0.716 13.928 25.07 1 26.37 ? C3A HEM 901 A 1 HETATM 8 C C4A HEM . . . B 2 -0.071 15.047 24.738 1 25.64 ? C4A HEM 901 A 1 HETATM 9 C CMA HEM . . . B 2 0.641 13.13 26.344 1 25.78 ? CMA HEM 901 A 1 HETATM 10 C CAA HEM . . . B 2 2.559 12.586 23.941 1 21.88 ? CAA HEM 901 A 1 HETATM 11 C CBA HEM . . . B 2 3.931 13.206 24.237 1 26.32 ? CBA HEM 901 A 1 HETATM 12 C CGA HEM . . . B 2 5.001 12.156 24.373 1 31.87 ? CGA HEM 901 A 1 HETATM 13 O O1A HEM . . . B 2 4.69 10.965 24.589 1 34.85 ? O1A HEM 901 A 1 HETATM 14 O O2A HEM . . . B 2 6.207 12.477 24.279 1 33.42 ? O2A HEM 901 A 1 HETATM 15 C C1B HEM . . . B 2 -1.281 16.954 25.491 1 18.98 ? C1B HEM 901 A 1 HETATM 16 C C2B HEM . . . B 2 -1.889 17.665 26.558 1 20.32 ? C2B HEM 901 A 1 HETATM 17 C C3B HEM . . . B 2 -2.006 18.964 26.163 1 19.47 ? C3B HEM 901 A 1 HETATM 18 C C4B HEM . . . B 2 -1.43 19.024 24.793 1 20.37 ? C4B HEM 901 A 1 HETATM 19 C CMB HEM . . . B 2 -2.327 17.083 27.877 1 20.17 ? CMB HEM 901 A 1 HETATM 20 C CAB HEM . . . B 2 -2.584 20.07 26.955 1 18.73 ? CAB HEM 901 A 1 HETATM 21 C CBB HEM . . . B 2 -3.431 20.953 26.424 1 15.19 ? CBB HEM 901 A 1 HETATM 22 C C1C HEM . . . B 2 -0.85 20.302 22.761 1 21.72 ? C1C HEM 901 A 1 HETATM 23 C C2C HEM . . . B 2 -0.679 21.474 21.997 1 22.73 ? C2C HEM 901 A 1 HETATM 24 C C3C HEM . . . B 2 -0.125 21.105 20.773 1 22.68 ? C3C HEM 901 A 1 HETATM 25 C C4C HEM . . . B 2 0.042 19.688 20.816 1 22.97 ? C4C HEM 901 A 1 HETATM 26 C CMC HEM . . . B 2 -1.044 22.868 22.44 1 21.44 ? CMC HEM 901 A 1 HETATM 27 C CAC HEM . . . B 2 0.248 21.983 19.638 1 21.16 ? CAC HEM 901 A 1 HETATM 28 C CBC HEM . . . B 2 -0.495 22.99 19.18 1 20.69 ? CBC HEM 901 A 1 HETATM 29 C C1D HEM . . . B 2 1.159 17.666 20.106 1 22.88 ? C1D HEM 901 A 1 HETATM 30 C C2D HEM . . . B 2 2.107 17.05 19.171 1 23.26 ? C2D HEM 901 A 1 HETATM 31 C C3D HEM . . . B 2 2.492 15.895 19.732 1 21.67 ? C3D HEM 901 A 1 HETATM 32 C C4D HEM . . . B 2 1.777 15.798 21.009 1 20.78 ? C4D HEM 901 A 1 HETATM 33 C CMD HEM . . . B 2 2.565 17.596 17.844 1 21.47 ? CMD HEM 901 A 1 HETATM 34 C CAD HEM . . . B 2 3.444 14.894 19.138 1 24.17 ? CAD HEM 901 A 1 HETATM 35 C CBD HEM . . . B 2 4.908 15.166 19.469 1 29.73 ? CBD HEM 901 A 1 HETATM 36 C CGD HEM . . . B 2 5.684 13.982 18.955 1 34.18 ? CGD HEM 901 A 1 HETATM 37 O O1D HEM . . . B 2 6.522 13.411 19.685 1 34.95 ? O1D HEM 901 A 1 HETATM 38 O O2D HEM . . . B 2 5.482 13.555 17.796 1 34.22 ? O2D HEM 901 A 1 HETATM 39 N NA HEM . . . B 2 0.281 15.519 23.493 1 23.92 ? NA HEM 901 A 1 HETATM 40 N NB HEM . . . B 2 -0.992 17.785 24.48 1 20.25 ? NB HEM 901 A 1 HETATM 41 N NC HEM . . . B 2 -0.419 19.241 22.023 1 22.91 ? NC HEM 901 A 1 HETATM 42 N ND HEM . . . B 2 1.025 16.89 21.201 1 22.67 ? ND HEM 901 A 1 HETATM 43 FE FE HEM . . . B 2 -0.13 17.273 22.624 1 25.96 ? FE HEM 901 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #