data_4UGG # _model_server_result.job_id iRnKTHH8gNHsyoxfYylFiA _model_server_result.datetime_utc '2024-10-19 00:51:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ugg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":904}' # _entry.id 4UGG # _exptl.entry_id 4UGG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 361.483 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-6-(2-Amino-2-(3-(2-(6-amino-4-methylpyridin-2-yl)ethyl)phenyl)ethyl)-4-methylpyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UGG _cell.length_a 80.5 _cell.length_b 94.97 _cell.length_c 62.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UGG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.601 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H27 N5' _chem_comp.formula_weight 361.483 _chem_comp.id S5D _chem_comp.mon_nstd_flag . _chem_comp.name (R)-6-(2-Amino-2-(3-(2-(6-amino-4-methylpyridin-2-yl)ethyl)phenyl)ethyl)-4-methylpyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S5D doub 405 n y C1 C6 S5D sing 406 n y C2 C3 S5D sing 407 n y C2 C19 S5D sing 408 n n C3 C4 S5D doub 409 n y C4 C5 S5D sing 410 n y C5 C6 S5D doub 411 n y C6 C29 S5D sing 412 n n N11 C12 S5D doub 413 n y N11 C16 S5D sing 414 n y C12 N12 S5D sing 415 n n C12 C13 S5D sing 416 n y C13 C14 S5D doub 417 n y C14 C15 S5D sing 418 n y C14 C17 S5D sing 419 n n C15 C16 S5D doub 420 n y C16 C18 S5D sing 421 n n C18 C19 S5D sing 422 n n N21 C22 S5D doub 423 n y N21 C26 S5D sing 424 n y C22 N22 S5D sing 425 n n C22 C23 S5D sing 426 n y C23 C24 S5D doub 427 n y C24 C25 S5D sing 428 n y C24 C27 S5D sing 429 n n C25 C26 S5D doub 430 n y C26 C28 S5D sing 431 n n C28 C29 S5D sing 432 n n C29 N29 S5D sing 433 n n C1 H1 S5D sing 434 n n C3 H3 S5D sing 435 n n C4 H4 S5D sing 436 n n C5 H5 S5D sing 437 n n N12 HN12 S5D sing 438 n n N12 HN1A S5D sing 439 n n C13 H13 S5D sing 440 n n C15 H15 S5D sing 441 n n C17 H17 S5D sing 442 n n C17 H17A S5D sing 443 n n C17 H17B S5D sing 444 n n C18 H18 S5D sing 445 n n C18 H18A S5D sing 446 n n C19 H19 S5D sing 447 n n C19 H19A S5D sing 448 n n N22 HN22 S5D sing 449 n n N22 HN2A S5D sing 450 n n C23 H23 S5D sing 451 n n C25 H25 S5D sing 452 n n C27 H27 S5D sing 453 n n C27 H27A S5D sing 454 n n C27 H27B S5D sing 455 n n C28 H28 S5D sing 456 n n C28 H28A S5D sing 457 n n C29 H29 S5D sing 458 n n N29 HN29 S5D sing 459 n n N29 HN2B S5D sing 460 n n # _atom_sites.entry_id 4UGG _atom_sites.fract_transf_matrix[1][1] 0.012422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 901 HEM HEM . C 3 H4B A 1 902 902 H4B H4B . D 4 CL A 1 903 903 CL CL . E 5 S5D A 1 904 904 S5D S5D . F 6 GOL A 1 905 905 GOL GOL . G 7 HOH A 1 2001 2001 HOH HOH . G 7 HOH A 2 2002 2002 HOH HOH . G 7 HOH A 3 2003 2003 HOH HOH . G 7 HOH A 4 2004 2004 HOH HOH . G 7 HOH A 5 2005 2005 HOH HOH . G 7 HOH A 6 2006 2006 HOH HOH . G 7 HOH A 7 2007 2007 HOH HOH . G 7 HOH A 8 2008 2008 HOH HOH . G 7 HOH A 9 2009 2009 HOH HOH . G 7 HOH A 10 2010 2010 HOH HOH . G 7 HOH A 11 2011 2011 HOH HOH . G 7 HOH A 12 2012 2012 HOH HOH . G 7 HOH A 13 2013 2013 HOH HOH . G 7 HOH A 14 2014 2014 HOH HOH . G 7 HOH A 15 2015 2015 HOH HOH . G 7 HOH A 16 2016 2016 HOH HOH . G 7 HOH A 17 2017 2017 HOH HOH . G 7 HOH A 18 2018 2018 HOH HOH . G 7 HOH A 19 2019 2019 HOH HOH . G 7 HOH A 20 2020 2020 HOH HOH . G 7 HOH A 21 2021 2021 HOH HOH . G 7 HOH A 22 2022 2022 HOH HOH . G 7 HOH A 23 2023 2023 HOH HOH . G 7 HOH A 24 2024 2024 HOH HOH . G 7 HOH A 25 2025 2025 HOH HOH . G 7 HOH A 26 2026 2026 HOH HOH . G 7 HOH A 27 2027 2027 HOH HOH . G 7 HOH A 28 2028 2028 HOH HOH . G 7 HOH A 29 2029 2029 HOH HOH . G 7 HOH A 30 2030 2030 HOH HOH . G 7 HOH A 31 2031 2031 HOH HOH . G 7 HOH A 32 2032 2032 HOH HOH . G 7 HOH A 33 2033 2033 HOH HOH . G 7 HOH A 34 2034 2034 HOH HOH . G 7 HOH A 35 2035 2035 HOH HOH . G 7 HOH A 36 2036 2036 HOH HOH . G 7 HOH A 37 2037 2037 HOH HOH . G 7 HOH A 38 2038 2038 HOH HOH . G 7 HOH A 39 2039 2039 HOH HOH . G 7 HOH A 40 2040 2040 HOH HOH . G 7 HOH A 41 2041 2041 HOH HOH . G 7 HOH A 42 2042 2042 HOH HOH . G 7 HOH A 43 2043 2043 HOH HOH . G 7 HOH A 44 2044 2044 HOH HOH . G 7 HOH A 45 2045 2045 HOH HOH . G 7 HOH A 46 2046 2046 HOH HOH . G 7 HOH A 47 2047 2047 HOH HOH . G 7 HOH A 48 2048 2048 HOH HOH . G 7 HOH A 49 2049 2049 HOH HOH . G 7 HOH A 50 2050 2050 HOH HOH . G 7 HOH A 51 2051 2051 HOH HOH . G 7 HOH A 52 2052 2052 HOH HOH . G 7 HOH A 53 2053 2053 HOH HOH . G 7 HOH A 54 2054 2054 HOH HOH . G 7 HOH A 55 2055 2055 HOH HOH . G 7 HOH A 56 2056 2056 HOH HOH . G 7 HOH A 57 2057 2057 HOH HOH . G 7 HOH A 58 2058 2058 HOH HOH . G 7 HOH A 59 2059 2059 HOH HOH . G 7 HOH A 60 2060 2060 HOH HOH . G 7 HOH A 61 2061 2061 HOH HOH . G 7 HOH A 62 2062 2062 HOH HOH . G 7 HOH A 63 2063 2063 HOH HOH . G 7 HOH A 64 2064 2064 HOH HOH . G 7 HOH A 65 2065 2065 HOH HOH . G 7 HOH A 66 2066 2066 HOH HOH . G 7 HOH A 67 2067 2067 HOH HOH . G 7 HOH A 68 2068 2068 HOH HOH . G 7 HOH A 69 2069 2069 HOH HOH . G 7 HOH A 70 2070 2070 HOH HOH . G 7 HOH A 71 2071 2071 HOH HOH . G 7 HOH A 72 2072 2072 HOH HOH . G 7 HOH A 73 2073 2073 HOH HOH . G 7 HOH A 74 2074 2074 HOH HOH . G 7 HOH A 75 2075 2075 HOH HOH . G 7 HOH A 76 2076 2076 HOH HOH . G 7 HOH A 77 2077 2077 HOH HOH . G 7 HOH A 78 2078 2078 HOH HOH . G 7 HOH A 79 2079 2079 HOH HOH . G 7 HOH A 80 2080 2080 HOH HOH . G 7 HOH A 81 2081 2081 HOH HOH . G 7 HOH A 82 2082 2082 HOH HOH . G 7 HOH A 83 2083 2083 HOH HOH . G 7 HOH A 84 2084 2084 HOH HOH . G 7 HOH A 85 2085 2085 HOH HOH . G 7 HOH A 86 2086 2086 HOH HOH . G 7 HOH A 87 2087 2087 HOH HOH . G 7 HOH A 88 2088 2088 HOH HOH . G 7 HOH A 89 2089 2089 HOH HOH . G 7 HOH A 90 2090 2090 HOH HOH . G 7 HOH A 91 2091 2091 HOH HOH . G 7 HOH A 92 2092 2092 HOH HOH . G 7 HOH A 93 2093 2093 HOH HOH . G 7 HOH A 94 2094 2094 HOH HOH . G 7 HOH A 95 2095 2095 HOH HOH . G 7 HOH A 96 2096 2096 HOH HOH . G 7 HOH A 97 2097 2097 HOH HOH . G 7 HOH A 98 2098 2098 HOH HOH . G 7 HOH A 99 2099 2099 HOH HOH . G 7 HOH A 100 2100 2100 HOH HOH . G 7 HOH A 101 2101 2101 HOH HOH . G 7 HOH A 102 2102 2102 HOH HOH . G 7 HOH A 103 2103 2103 HOH HOH . G 7 HOH A 104 2104 2104 HOH HOH . G 7 HOH A 105 2105 2105 HOH HOH . G 7 HOH A 106 2106 2106 HOH HOH . G 7 HOH A 107 2107 2107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S5D . . . E 5 7.556 14.579 22.081 1 49.04 ? C1 S5D 904 A 1 HETATM 2 C C2 S5D . . . E 5 7.133 15.317 23.186 1 48.2 ? C2 S5D 904 A 1 HETATM 3 C C3 S5D . . . E 5 7.947 15.365 24.323 1 48.26 ? C3 S5D 904 A 1 HETATM 4 C C4 S5D . . . E 5 9.172 14.695 24.358 1 48.74 ? C4 S5D 904 A 1 HETATM 5 C C5 S5D . . . E 5 9.582 13.961 23.247 1 49.38 ? C5 S5D 904 A 1 HETATM 6 C C6 S5D . . . E 5 8.776 13.907 22.11 1 49.75 ? C6 S5D 904 A 1 HETATM 7 N N11 S5D . . . E 5 3.309 16.865 25.898 1 45.07 ? N11 S5D 904 A 1 HETATM 8 C C12 S5D . . . E 5 2.252 17.658 26.179 1 44.72 ? C12 S5D 904 A 1 HETATM 9 N N12 S5D . . . E 5 1.53 17.41 27.301 1 44.23 ? N12 S5D 904 A 1 HETATM 10 C C13 S5D . . . E 5 1.921 18.711 25.326 1 44.94 ? C13 S5D 904 A 1 HETATM 11 C C14 S5D . . . E 5 2.697 18.921 24.193 1 45.35 ? C14 S5D 904 A 1 HETATM 12 C C15 S5D . . . E 5 3.782 18.085 23.924 1 45.71 ? C15 S5D 904 A 1 HETATM 13 C C16 S5D . . . E 5 4.078 17.047 24.8 1 45.65 ? C16 S5D 904 A 1 HETATM 14 C C17 S5D . . . E 5 2.371 20.043 23.252 1 45.7 ? C17 S5D 904 A 1 HETATM 15 C C18 S5D . . . E 5 5.247 16.106 24.587 1 46.31 ? C18 S5D 904 A 1 HETATM 16 C C19 S5D . . . E 5 5.796 16.047 23.162 1 47.45 ? C19 S5D 904 A 1 HETATM 17 N N21 S5D . . . E 5 9.304 13.211 18.062 1 53.27 ? N21 S5D 904 A 1 HETATM 18 C C22 S5D . . . E 5 9.281 12.688 16.817 1 54.08 ? C22 S5D 904 A 1 HETATM 19 N N22 S5D . . . E 5 8.133 12.726 16.099 1 54.02 ? N22 S5D 904 A 1 HETATM 20 C C23 S5D . . . E 5 10.438 12.114 16.286 1 55.05 ? C23 S5D 904 A 1 HETATM 21 C C24 S5D . . . E 5 11.608 12.086 17.048 1 54.82 ? C24 S5D 904 A 1 HETATM 22 C C25 S5D . . . E 5 11.598 12.637 18.329 1 53.92 ? C25 S5D 904 A 1 HETATM 23 C C26 S5D . . . E 5 10.427 13.206 18.817 1 52.96 ? C26 S5D 904 A 1 HETATM 24 C C27 S5D . . . E 5 12.87 11.473 16.496 1 55.53 ? C27 S5D 904 A 1 HETATM 25 C C28 S5D . . . E 5 10.381 13.795 20.205 1 51.83 ? C28 S5D 904 A 1 HETATM 26 C C29 S5D . . . E 5 9.21 13.128 20.927 1 50.98 ? C29 S5D 904 A 1 HETATM 27 N N29 S5D . . . E 5 9.598 11.767 21.352 1 51.21 ? N29 S5D 904 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #