data_4UGM # _model_server_result.job_id oxc-wKn5JeoINDm04N_fRg _model_server_result.datetime_utc '2024-11-25 16:21:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ugm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 4UGM # _exptl.entry_id 4UGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.588 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-(ethane-1,2-diyldibenzene-3,1-diyl)dithiophene-2-carboximidamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UGM _cell.length_a 80.53 _cell.length_b 95.05 _cell.length_c 62.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.484 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H22 N4 S2' _chem_comp.formula_weight 430.588 _chem_comp.id 1QE _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-(ethane-1,2-diyldibenzene-3,1-diyl)dithiophene-2-carboximidamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 C02 1QE doub 1 n y C03 C04 1QE sing 2 n y C02 S01 1QE sing 3 n y C04 C05 1QE doub 4 n y S01 C05 1QE sing 5 n y C05 C06 1QE sing 6 n n C06 N08 1QE doub 7 n n C06 N07 1QE sing 8 n n C13 C12 1QE doub 9 n y C13 C14 1QE sing 10 n y C12 C11 1QE sing 11 n y C14 C15 1QE doub 12 n y N07 C11 1QE sing 13 n n C11 C16 1QE doub 14 n y C15 C16 1QE sing 15 n y C15 C17 1QE sing 16 n n C17 C37 1QE sing 17 n n C37 C35 1QE sing 18 n n C34 C35 1QE doub 19 n y C34 C33 1QE sing 20 n y C35 C36 1QE sing 21 n y C33 C32 1QE doub 22 n y C36 C31 1QE doub 23 n y C32 C31 1QE sing 24 n y C31 N27 1QE sing 25 n n S21 C22 1QE sing 26 n y S21 C25 1QE sing 27 n y N27 C26 1QE sing 28 n n C22 C23 1QE doub 29 n y C26 C25 1QE sing 30 n n C26 N28 1QE doub 31 n n C25 C24 1QE doub 32 n y C23 C24 1QE sing 33 n y N08 H1 1QE sing 34 n n C02 H2 1QE sing 35 n n C03 H3 1QE sing 36 n n C04 H4 1QE sing 37 n n N07 H5 1QE sing 38 n n C16 H6 1QE sing 39 n n C12 H7 1QE sing 40 n n C13 H8 1QE sing 41 n n C14 H9 1QE sing 42 n n C17 H10 1QE sing 43 n n C17 H11 1QE sing 44 n n C37 H12 1QE sing 45 n n C37 H13 1QE sing 46 n n C34 H14 1QE sing 47 n n C33 H15 1QE sing 48 n n C32 H16 1QE sing 49 n n C36 H17 1QE sing 50 n n N27 H18 1QE sing 51 n n N28 H19 1QE sing 52 n n C22 H20 1QE sing 53 n n C23 H21 1QE sing 54 n n C24 H22 1QE sing 55 n n # _atom_sites.entry_id 4UGM _atom_sites.fract_transf_matrix[1][1] 0.012418 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 901 HEM HEM . C 3 H4B A 1 902 902 H4B H4B . D 4 CL A 1 903 903 CL CL . E 5 1QE A 1 804 804 1QE 1QE . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . F 6 HOH A 45 2045 2045 HOH HOH . F 6 HOH A 46 2046 2046 HOH HOH . F 6 HOH A 47 2047 2047 HOH HOH . F 6 HOH A 48 2048 2048 HOH HOH . F 6 HOH A 49 2049 2049 HOH HOH . F 6 HOH A 50 2050 2050 HOH HOH . F 6 HOH A 51 2051 2051 HOH HOH . F 6 HOH A 52 2052 2052 HOH HOH . F 6 HOH A 53 2053 2053 HOH HOH . F 6 HOH A 54 2054 2054 HOH HOH . F 6 HOH A 55 2055 2055 HOH HOH . F 6 HOH A 56 2056 2056 HOH HOH . F 6 HOH A 57 2057 2057 HOH HOH . F 6 HOH A 58 2058 2058 HOH HOH . F 6 HOH A 59 2059 2059 HOH HOH . F 6 HOH A 60 2060 2060 HOH HOH . F 6 HOH A 61 2061 2061 HOH HOH . F 6 HOH A 62 2062 2062 HOH HOH . F 6 HOH A 63 2063 2063 HOH HOH . F 6 HOH A 64 2064 2064 HOH HOH . F 6 HOH A 65 2065 2065 HOH HOH . F 6 HOH A 66 2066 2066 HOH HOH . F 6 HOH A 67 2067 2067 HOH HOH . F 6 HOH A 68 2068 2068 HOH HOH . F 6 HOH A 69 2069 2069 HOH HOH . F 6 HOH A 70 2070 2070 HOH HOH . F 6 HOH A 71 2071 2071 HOH HOH . F 6 HOH A 72 2072 2072 HOH HOH . F 6 HOH A 73 2073 2073 HOH HOH . F 6 HOH A 74 2074 2074 HOH HOH . F 6 HOH A 75 2075 2075 HOH HOH . F 6 HOH A 76 2076 2076 HOH HOH . F 6 HOH A 77 2077 2077 HOH HOH . F 6 HOH A 78 2078 2078 HOH HOH . F 6 HOH A 79 2079 2079 HOH HOH . F 6 HOH A 80 2080 2080 HOH HOH . F 6 HOH A 81 2081 2081 HOH HOH . F 6 HOH A 82 2082 2082 HOH HOH . F 6 HOH A 83 2083 2083 HOH HOH . F 6 HOH A 84 2084 2084 HOH HOH . F 6 HOH A 85 2085 2085 HOH HOH . F 6 HOH A 86 2086 2086 HOH HOH . F 6 HOH A 87 2087 2087 HOH HOH . F 6 HOH A 88 2088 2088 HOH HOH . F 6 HOH A 89 2089 2089 HOH HOH . F 6 HOH A 90 2090 2090 HOH HOH . F 6 HOH A 91 2091 2091 HOH HOH . F 6 HOH A 92 2092 2092 HOH HOH . F 6 HOH A 93 2093 2093 HOH HOH . F 6 HOH A 94 2094 2094 HOH HOH . F 6 HOH A 95 2095 2095 HOH HOH . F 6 HOH A 96 2096 2096 HOH HOH . F 6 HOH A 97 2097 2097 HOH HOH . F 6 HOH A 98 2098 2098 HOH HOH . F 6 HOH A 99 2099 2099 HOH HOH . F 6 HOH A 100 2100 2100 HOH HOH . F 6 HOH A 101 2101 2101 HOH HOH . F 6 HOH A 102 2102 2102 HOH HOH . F 6 HOH A 103 2103 2103 HOH HOH . F 6 HOH A 104 2104 2104 HOH HOH . F 6 HOH A 105 2105 2105 HOH HOH . F 6 HOH A 106 2106 2106 HOH HOH . F 6 HOH A 107 2107 2107 HOH HOH . F 6 HOH A 108 2108 2108 HOH HOH . F 6 HOH A 109 2109 2109 HOH HOH . F 6 HOH A 110 2110 2110 HOH HOH . F 6 HOH A 111 2111 2111 HOH HOH . F 6 HOH A 112 2112 2112 HOH HOH . F 6 HOH A 113 2113 2113 HOH HOH . F 6 HOH A 114 2114 2114 HOH HOH . F 6 HOH A 115 2115 2115 HOH HOH . F 6 HOH A 116 2116 2116 HOH HOH . F 6 HOH A 117 2117 2117 HOH HOH . F 6 HOH A 118 2118 2118 HOH HOH . F 6 HOH A 119 2119 2119 HOH HOH . F 6 HOH A 120 2120 2120 HOH HOH . F 6 HOH A 121 2121 2121 HOH HOH . F 6 HOH A 122 2122 2122 HOH HOH . F 6 HOH A 123 2123 2123 HOH HOH . F 6 HOH A 124 2124 2124 HOH HOH . F 6 HOH A 125 2125 2125 HOH HOH . F 6 HOH A 126 2126 2126 HOH HOH . F 6 HOH A 127 2127 2127 HOH HOH . F 6 HOH A 128 2128 2128 HOH HOH . F 6 HOH A 129 2129 2129 HOH HOH . F 6 HOH A 130 2130 2130 HOH HOH . F 6 HOH A 131 2131 2131 HOH HOH . F 6 HOH A 132 2132 2132 HOH HOH . F 6 HOH A 133 2133 2133 HOH HOH . F 6 HOH A 134 2134 2134 HOH HOH . F 6 HOH A 135 2135 2135 HOH HOH . F 6 HOH A 136 2136 2136 HOH HOH . F 6 HOH A 137 2137 2137 HOH HOH . F 6 HOH A 138 2138 2138 HOH HOH . F 6 HOH A 139 2139 2139 HOH HOH . F 6 HOH A 140 2140 2140 HOH HOH . F 6 HOH A 141 2141 2141 HOH HOH . F 6 HOH A 142 2142 2142 HOH HOH . F 6 HOH A 143 2143 2143 HOH HOH . F 6 HOH A 144 2144 2144 HOH HOH . F 6 HOH A 145 2145 2145 HOH HOH . F 6 HOH A 146 2146 2146 HOH HOH . F 6 HOH A 147 2147 2147 HOH HOH . F 6 HOH A 148 2148 2148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N08 1QE . . . E 5 2.125 17.526 26.831 1 24.85 ? N08 1QE 804 A 1 HETATM 2 C C06 1QE . . . E 5 2.993 17.615 25.887 1 30.68 ? C06 1QE 804 A 1 HETATM 3 C C05 1QE . . . E 5 3.149 18.87 25.129 1 32.91 ? C05 1QE 804 A 1 HETATM 4 S S01 1QE . . . E 5 1.655 19.488 24.536 1 41.85 ? S01 1QE 804 A 1 HETATM 5 C C02 1QE . . . E 5 2.403 20.817 23.706 1 28.66 ? C02 1QE 804 A 1 HETATM 6 C C03 1QE . . . E 5 3.784 20.707 23.908 1 28.14 ? C03 1QE 804 A 1 HETATM 7 C C04 1QE . . . E 5 4.226 19.632 24.679 1 20.14 ? C04 1QE 804 A 1 HETATM 8 N N07 1QE . . . E 5 3.763 16.587 25.486 1 28.81 ? N07 1QE 804 A 1 HETATM 9 C C11 1QE . . . E 5 4.341 16.48 24.245 1 28.11 ? C11 1QE 804 A 1 HETATM 10 C C16 1QE . . . E 5 5.62 15.91 24.116 1 34.26 ? C16 1QE 804 A 1 HETATM 11 C C12 1QE . . . E 5 3.685 16.882 23.076 1 29.87 ? C12 1QE 804 A 1 HETATM 12 C C13 1QE . . . E 5 4.29 16.752 21.826 1 33.49 ? C13 1QE 804 A 1 HETATM 13 C C14 1QE . . . E 5 5.556 16.179 21.715 1 36.26 ? C14 1QE 804 A 1 HETATM 14 C C15 1QE . . . E 5 6.224 15.755 22.857 1 32.32 ? C15 1QE 804 A 1 HETATM 15 C C17 1QE . . . E 5 7.598 15.142 22.697 1 38.62 ? C17 1QE 804 A 1 HETATM 16 C C37 1QE . . . E 5 7.468 13.97 21.717 1 40.1 ? C37 1QE 804 A 1 HETATM 17 C C35 1QE . . . E 5 8.83 13.443 21.282 1 44.18 ? C35 1QE 804 A 1 HETATM 18 C C34 1QE . . . E 5 9.435 12.415 22 1 42.73 ? C34 1QE 804 A 1 HETATM 19 C C33 1QE . . . E 5 10.678 11.933 21.587 1 46.36 ? C33 1QE 804 A 1 HETATM 20 C C32 1QE . . . E 5 11.315 12.472 20.468 1 45.6 ? C32 1QE 804 A 1 HETATM 21 C C36 1QE . . . E 5 9.48 13.975 20.158 1 39.93 ? C36 1QE 804 A 1 HETATM 22 C C31 1QE . . . E 5 10.721 13.495 19.73 1 41.11 ? C31 1QE 804 A 1 HETATM 23 N N27 1QE . . . E 5 11.332 14.051 18.635 1 43.82 ? N27 1QE 804 A 1 HETATM 24 C C26 1QE . . . E 5 11.875 13.369 17.6 1 50.05 ? C26 1QE 804 A 1 HETATM 25 N N28 1QE . . . E 5 11.737 12.118 17.477 1 42.02 ? N28 1QE 804 A 1 HETATM 26 C C25 1QE . . . E 5 12.66 14.088 16.54 1 45.58 ? C25 1QE 804 A 1 HETATM 27 S S21 1QE . . . E 5 13.186 15.703 16.887 1 71.11 ? S21 1QE 804 A 1 HETATM 28 C C22 1QE . . . E 5 13.984 15.963 15.366 1 53.72 ? C22 1QE 804 A 1 HETATM 29 C C23 1QE . . . E 5 13.809 14.785 14.63 1 48.49 ? C23 1QE 804 A 1 HETATM 30 C C24 1QE . . . E 5 13.09 13.756 15.257 1 39.76 ? C24 1QE 804 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #