data_4UHX # _model_server_result.job_id wDOmoftP1jtPt_RtmLGuPQ _model_server_result.datetime_utc '2024-11-22 19:43:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uhx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3003}' # _entry.id 4UHX # _exptl.entry_id 4UHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.352 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UHX _cell.length_a 148.732 _cell.length_b 148.732 _cell.length_c 132.808 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -132.808 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 49 A CYS 49 1_555 C FE1 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc2 A SG CYS 52 A CYS 52 1_555 C FE2 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 A SG CYS 74 A CYS 74 1_555 C FE2 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc4 A SG CYS 114 A CYS 114 1_555 B FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc5 A SG CYS 117 A CYS 117 1_555 B FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 A SG CYS 149 A CYS 149 1_555 B FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 A SG CYS 151 A CYS 151 1_555 B FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc8 D S1' MTE . A MTE 3003 1_555 E MO MOS . A MOS 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc9 D S2' MTE . A MTE 3003 1_555 E MO MOS . A MOS 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? # _chem_comp.formula 'C10 H14 N5 O6 P S2' _chem_comp.formula_weight 395.352 _chem_comp.id MTE _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTE doub 415 n y N1 C10 MTE sing 416 n y C2 N2 MTE sing 417 n n C2 N3 MTE sing 418 n y N2 HN21 MTE sing 419 n n N2 HN22 MTE sing 420 n n N3 C4 MTE sing 421 n y N3 HN3 MTE sing 422 n n C4 O4 MTE doub 423 n n C4 C9 MTE sing 424 n y N5 C6 MTE sing 425 n n N5 C9 MTE sing 426 n n N5 HN5 MTE sing 427 n n C6 C7 MTE sing 428 n n C6 C1' MTE sing 429 n n C6 H6 MTE sing 430 n n C7 N8 MTE sing 431 n n C7 O3' MTE sing 432 n n C7 H7 MTE sing 433 n n N8 C10 MTE sing 434 n n N8 HN8 MTE sing 435 n n C9 C10 MTE doub 436 n y C1' S1' MTE sing 437 n n C1' C2' MTE doub 438 n n S1' H1S MTE sing 439 n n C2' S2' MTE sing 440 n n C2' C3' MTE sing 441 n n S2' H2S MTE sing 442 n n C3' O3' MTE sing 443 n n C3' C4' MTE sing 444 n n C3' H3' MTE sing 445 n n C4' O4' MTE sing 446 n n C4' "H4'1" MTE sing 447 n n C4' "H4'2" MTE sing 448 n n O4' P MTE sing 449 n n P O1P MTE doub 450 n n P O2P MTE sing 451 n n P O3P MTE sing 452 n n O2P HOP2 MTE sing 453 n n O3P HOP3 MTE sing 454 n n # _atom_sites.entry_id 4UHX _atom_sites.fract_transf_matrix[1][1] 0.006724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 3001 3001 FES FES . C 2 FES A 1 3002 3002 FES FES . D 3 MTE A 1 3003 3003 MTE MTE . E 4 MOS A 1 3004 3004 MOS MOS . F 5 FAD A 1 3006 3006 FAD FAD . G 6 4FT A 1 3007 3007 4FT 4FT . H 7 LZU A 1 3008 3008 LZU LZU . I 8 RTZ A 1 3009 3009 RTZ RTZ . J 9 MLI A 1 3010 3010 MLI MLI . K 9 MLI A 1 3011 3011 MLI MLI . L 10 HOH A 1 2001 2001 HOH HOH . L 10 HOH A 2 2002 2002 HOH HOH . L 10 HOH A 3 2003 2003 HOH HOH . L 10 HOH A 4 2004 2004 HOH HOH . L 10 HOH A 5 2005 2005 HOH HOH . L 10 HOH A 6 2006 2006 HOH HOH . L 10 HOH A 7 2007 2007 HOH HOH . L 10 HOH A 8 2008 2008 HOH HOH . L 10 HOH A 9 2009 2009 HOH HOH . L 10 HOH A 10 2010 2010 HOH HOH . L 10 HOH A 11 2011 2011 HOH HOH . L 10 HOH A 12 2012 2012 HOH HOH . L 10 HOH A 13 2013 2013 HOH HOH . L 10 HOH A 14 2014 2014 HOH HOH . L 10 HOH A 15 2015 2015 HOH HOH . L 10 HOH A 16 2016 2016 HOH HOH . L 10 HOH A 17 2017 2017 HOH HOH . L 10 HOH A 18 2018 2018 HOH HOH . L 10 HOH A 19 2019 2019 HOH HOH . L 10 HOH A 20 2020 2020 HOH HOH . L 10 HOH A 21 2021 2021 HOH HOH . L 10 HOH A 22 2022 2022 HOH HOH . L 10 HOH A 23 2023 2023 HOH HOH . L 10 HOH A 24 2024 2024 HOH HOH . L 10 HOH A 25 2025 2025 HOH HOH . L 10 HOH A 26 2026 2026 HOH HOH . L 10 HOH A 27 2027 2027 HOH HOH . L 10 HOH A 28 2028 2028 HOH HOH . L 10 HOH A 29 2029 2029 HOH HOH . L 10 HOH A 30 2030 2030 HOH HOH . L 10 HOH A 31 2031 2031 HOH HOH . L 10 HOH A 32 2032 2032 HOH HOH . L 10 HOH A 33 2033 2033 HOH HOH . L 10 HOH A 34 2034 2034 HOH HOH . L 10 HOH A 35 2035 2035 HOH HOH . L 10 HOH A 36 2036 2036 HOH HOH . L 10 HOH A 37 2037 2037 HOH HOH . L 10 HOH A 38 2038 2038 HOH HOH . L 10 HOH A 39 2039 2039 HOH HOH . L 10 HOH A 40 2040 2040 HOH HOH . L 10 HOH A 41 2041 2041 HOH HOH . L 10 HOH A 42 2042 2042 HOH HOH . L 10 HOH A 43 2043 2043 HOH HOH . L 10 HOH A 44 2044 2044 HOH HOH . L 10 HOH A 45 2045 2045 HOH HOH . L 10 HOH A 46 2046 2046 HOH HOH . L 10 HOH A 47 2047 2047 HOH HOH . L 10 HOH A 48 2048 2048 HOH HOH . L 10 HOH A 49 2049 2049 HOH HOH . L 10 HOH A 50 2050 2050 HOH HOH . L 10 HOH A 51 2051 2051 HOH HOH . L 10 HOH A 52 2052 2052 HOH HOH . L 10 HOH A 53 2053 2053 HOH HOH . L 10 HOH A 54 2054 2054 HOH HOH . L 10 HOH A 55 2055 2055 HOH HOH . L 10 HOH A 56 2056 2056 HOH HOH . L 10 HOH A 57 2057 2057 HOH HOH . L 10 HOH A 58 2058 2058 HOH HOH . L 10 HOH A 59 2059 2059 HOH HOH . L 10 HOH A 60 2060 2060 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTE . . . D 3 -36.96 -14.48 -45.924 1 81.39 ? N1 MTE 3003 A 1 HETATM 2 C C2 MTE . . . D 3 -37.673 -15.521 -46.439 1 80.46 ? C2 MTE 3003 A 1 HETATM 3 N N2 MTE . . . D 3 -38.838 -15.236 -47.072 1 79.07 ? N2 MTE 3003 A 1 HETATM 4 N N3 MTE . . . D 3 -37.259 -16.81 -46.341 1 82.13 ? N3 MTE 3003 A 1 HETATM 5 C C4 MTE . . . D 3 -36.106 -17.149 -45.722 1 82.75 ? C4 MTE 3003 A 1 HETATM 6 O O4 MTE . . . D 3 -35.736 -18.341 -45.636 1 81.21 ? O4 MTE 3003 A 1 HETATM 7 N N5 MTE . . . D 3 -34.131 -16.304 -44.458 1 83.57 ? N5 MTE 3003 A 1 HETATM 8 C C6 MTE . . . D 3 -33.574 -15.248 -43.624 1 85.07 ? C6 MTE 3003 A 1 HETATM 9 C C7 MTE . . . D 3 -33.698 -13.888 -44.305 1 86.11 ? C7 MTE 3003 A 1 HETATM 10 N N8 MTE . . . D 3 -35.052 -13.664 -44.788 1 84.14 ? N8 MTE 3003 A 1 HETATM 11 C C9 MTE . . . D 3 -35.271 -16.069 -45.146 1 82.95 ? C9 MTE 3003 A 1 HETATM 12 C C10 MTE . . . D 3 -35.79 -14.686 -45.272 1 83.1 ? C10 MTE 3003 A 1 HETATM 13 C C1' MTE . . . D 3 -32.145 -15.501 -43.241 1 85.66 ? C1' MTE 3003 A 1 HETATM 14 S S1' MTE . . . D 3 -31.795 -16.46 -41.844 1 86.93 ? S1' MTE 3003 A 1 HETATM 15 C C2' MTE . . . D 3 -31.146 -14.8 -43.789 1 87.22 ? C2' MTE 3003 A 1 HETATM 16 S S2' MTE . . . D 3 -29.581 -14.986 -43.184 1 88.38 ? S2' MTE 3003 A 1 HETATM 17 C C3' MTE . . . D 3 -31.391 -13.81 -44.909 1 87.47 ? C3' MTE 3003 A 1 HETATM 18 O O3' MTE . . . D 3 -32.75 -13.856 -45.381 1 87.32 ? O3' MTE 3003 A 1 HETATM 19 C C4' MTE . . . D 3 -30.408 -14.062 -46.054 1 86.72 ? C4' MTE 3003 A 1 HETATM 20 O O4' MTE . . . D 3 -30.751 -13.298 -47.213 1 87.24 ? O4' MTE 3003 A 1 HETATM 21 P P MTE . . . D 3 -30.356 -11.739 -47.363 1 87.78 ? P MTE 3003 A 1 HETATM 22 O O1P MTE . . . D 3 -30.493 -11.412 -48.833 1 86.26 ? O1P MTE 3003 A 1 HETATM 23 O O2P MTE . . . D 3 -28.929 -11.672 -46.886 1 86.25 ? O2P MTE 3003 A 1 HETATM 24 O O3P MTE . . . D 3 -31.358 -11.026 -46.484 1 89.06 ? O3P MTE 3003 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 24 #