data_4UIP # _model_server_result.job_id 2hw30Dnimh9mPjYryPeY4g _model_server_result.datetime_utc '2025-03-12 08:35:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1615}' # _entry.id 4UIP # _exptl.entry_id 4UIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UIP _cell.length_a 66.79 _cell.length_b 88.34 _cell.length_c 189.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1616 NAG 3 n C NAG 2 C 2 NAG A 1617 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 7 1_555 A SG CYS 33 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 A SG CYS 165 A CYS 166 1_555 A SG CYS 174 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 169 A CYS 170 1_555 A SG CYS 182 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 A SG CYS 190 A CYS 191 1_555 A SG CYS 198 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 A SG CYS 194 A CYS 195 1_555 A SG CYS 206 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 A SG CYS 207 A CYS 208 1_555 A SG CYS 215 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? disulf ? disulf7 A SG CYS 211 A CYS 212 1_555 A SG CYS 223 A CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf8 A SG CYS 226 A CYS 227 1_555 A SG CYS 235 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf9 A SG CYS 239 A CYS 240 1_555 A SG CYS 266 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf10 A SG CYS 270 A CYS 271 1_555 A SG CYS 282 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? disulf ? disulf11 A SG CYS 304 A CYS 305 1_555 A SG CYS 308 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf12 A SG CYS 312 A CYS 313 1_555 A SG CYS 337 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf13 A SG CYS 445 A CYS 446 1_555 A SG CYS 474 A CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? disulf ? disulf14 A SG CYS 481 A CYS 482 1_555 A SG CYS 490 A CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf15 A SG CYS 485 A CYS 486 1_555 A SG CYS 498 A CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 A SG CYS 501 A CYS 502 1_555 A SG CYS 510 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? disulf ? disulf17 A SG CYS 514 A CYS 515 1_555 A SG CYS 530 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf18 A SG CYS 533 A CYS 534 1_555 A SG CYS 546 A CYS 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? disulf ? disulf19 A SG CYS 537 A CYS 538 1_555 A SG CYS 554 A CYS 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? disulf ? disulf20 A SG CYS 570 A CYS 571 1_555 A SG CYS 592 A CYS 593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? disulf ? disulf21 A SG CYS 595 A CYS 596 1_555 A SG CYS 603 A CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? disulf ? disulf22 B SG CYS 196 B CYS 196 1_555 B SG CYS 229 B CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? covale ? covale1 A ND2 ASN 327 A ASN 328 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale2 A ND2 ASN 419 A ASN 420 1_555 D C1 NAG . A NAG 1614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 A ND2 ASN 503 A ASN 504 1_555 E C1 NAG . A NAG 1615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4UIP _atom_sites.fract_transf_matrix[1][1] 0.014972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 1614 1614 NAG NAG . E 4 NAG A 1 1615 1615 NAG NAG . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 3009 3009 HOH HOH . F 5 HOH A 31 3010 3010 HOH HOH . F 5 HOH A 32 3011 3011 HOH HOH . F 5 HOH A 33 3012 3012 HOH HOH . G 5 HOH B 1 2001 2001 HOH HOH . G 5 HOH B 2 2002 2002 HOH HOH . G 5 HOH B 3 2003 2003 HOH HOH . G 5 HOH B 4 2004 2004 HOH HOH . G 5 HOH B 5 2005 2005 HOH HOH . G 5 HOH B 6 2006 2006 HOH HOH . G 5 HOH B 7 2007 2007 HOH HOH . G 5 HOH B 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 14.476 -36.922 -15.359 1 63.88 ? C1 NAG 1615 A 1 HETATM 2 C C2 NAG . . . E 4 15.804 -37.519 -15.796 1 67.71 ? C2 NAG 1615 A 1 HETATM 3 C C3 NAG . . . E 4 15.755 -38.478 -17 1 66.18 ? C3 NAG 1615 A 1 HETATM 4 C C4 NAG . . . E 4 14.46 -39.227 -17.327 1 64.86 ? C4 NAG 1615 A 1 HETATM 5 C C5 NAG . . . E 4 13.214 -38.626 -16.677 1 63.13 ? C5 NAG 1615 A 1 HETATM 6 C C6 NAG . . . E 4 12.223 -39.76 -16.394 1 58.24 ? C6 NAG 1615 A 1 HETATM 7 C C7 NAG . . . E 4 17.794 -36.276 -15.093 1 66.09 ? C7 NAG 1615 A 1 HETATM 8 C C8 NAG . . . E 4 17.943 -37.193 -13.894 1 59.1 ? C8 NAG 1615 A 1 HETATM 9 N N2 NAG . . . E 4 16.78 -36.455 -15.965 1 66.67 ? N2 NAG 1615 A 1 HETATM 10 O O3 NAG . . . E 4 16.605 -39.533 -16.647 1 66.91 ? O3 NAG 1615 A 1 HETATM 11 O O4 NAG . . . E 4 14.301 -39.401 -18.73 1 58.42 ? O4 NAG 1615 A 1 HETATM 12 O O5 NAG . . . E 4 13.529 -37.989 -15.444 1 66.54 ? O5 NAG 1615 A 1 HETATM 13 O O6 NAG . . . E 4 12.746 -40.66 -15.432 1 57.21 ? O6 NAG 1615 A 1 HETATM 14 O O7 NAG . . . E 4 18.614 -35.37 -15.253 1 66.01 ? O7 NAG 1615 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #