data_4UJ4 # _model_server_result.job_id w2OJUq-PG1CvnEdVuqn69Q _model_server_result.datetime_utc '2024-10-12 15:28:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":200}' # _entry.id 4UJ4 # _exptl.entry_id 4UJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UJ4 _cell.length_a 66.12 _cell.length_b 161.701 _cell.length_c 192.762 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA hexameric 6 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression D,E,F,G,H,I,O,P,Q,R 1 1 J,K,L,S,T 2 1 A,B,C,M,N 2 2 A,B,C,M,N 3 1 J,K,L,S,T 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 66.12 0 0 3 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -66.12 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 O N N ? 4 Q N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 24 A SER 25 1_555 N MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc2 A OG1 THR 42 A THR 43 1_555 N MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc3 M O3G GNP . A GNP 200 1_555 N MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc4 M O2B GNP . A GNP 200 1_555 N MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc5 D OG SER 24 D SER 25 1_555 P MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc6 D OG1 THR 42 D THR 43 1_555 P MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc7 O O3G GNP . D GNP 200 1_555 P MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc8 O O2B GNP . D GNP 200 1_555 P MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc9 G OG SER 24 G SER 25 1_555 R MG MG . G MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc10 G OG1 THR 42 G THR 43 1_555 R MG MG . G MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc11 Q O3G GNP . G GNP 200 1_555 R MG MG . G MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc12 Q O2B GNP . G GNP 200 1_555 R MG MG . G MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc13 J OG SER 24 J SER 25 1_555 T MG MG . J MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc14 J OG1 THR 42 J THR 43 1_555 T MG MG . J MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc15 S O2B GNP . J GNP 200 1_555 T MG MG . J MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc16 S O3G GNP . J GNP 200 1_555 T MG MG . J MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 4UJ4 _atom_sites.fract_transf_matrix[1][1] 0.015124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 GNP A 1 200 200 GNP GNP . N 5 MG A 1 201 201 MG MG . O 4 GNP D 1 200 200 GNP GNP . P 5 MG D 1 201 201 MG MG . Q 4 GNP G 1 200 200 GNP GNP . R 5 MG G 1 201 201 MG MG . S 4 GNP J 1 200 200 GNP GNP . T 5 MG J 1 201 201 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . M 4 -5.034 -29.578 -71.174 1 162.6 ? PG GNP 200 A 1 HETATM 2 O O1G GNP . . . M 4 -5.225 -29.981 -69.729 1 155.87 ? O1G GNP 200 A 1 HETATM 3 O O2G GNP . . . M 4 -3.836 -30.356 -71.654 1 162.39 ? O2G GNP 200 A 1 HETATM 4 O O3G GNP . . . M 4 -6.271 -29.694 -72.035 1 164.76 ? O3G GNP 200 A 1 HETATM 5 N N3B GNP . . . M 4 -4.56 -28.066 -71.242 1 157.11 ? N3B GNP 200 A 1 HETATM 6 P PB GNP . . . M 4 -3.975 -27.445 -72.582 1 154.73 ? PB GNP 200 A 1 HETATM 7 O O1B GNP . . . M 4 -2.634 -28.003 -72.899 1 148.37 ? O1B GNP 200 A 1 HETATM 8 O O2B GNP . . . M 4 -5.021 -27.691 -73.602 1 161.84 ? O2B GNP 200 A 1 HETATM 9 O O3A GNP . . . M 4 -3.791 -25.933 -72.357 1 146.26 ? O3A GNP 200 A 1 HETATM 10 P PA GNP . . . M 4 -4.86 -24.846 -72.545 1 152.01 ? PA GNP 200 A 1 HETATM 11 O O1A GNP . . . M 4 -4.961 -24.471 -73.98 1 140.93 ? O1A GNP 200 A 1 HETATM 12 O O2A GNP . . . M 4 -6.1 -25.189 -71.804 1 156.14 ? O2A GNP 200 A 1 HETATM 13 O O5' GNP . . . M 4 -4.305 -23.543 -71.858 1 156.33 ? O5' GNP 200 A 1 HETATM 14 C C5' GNP . . . M 4 -3.867 -23.561 -70.52 1 152.73 ? C5' GNP 200 A 1 HETATM 15 C C4' GNP . . . M 4 -3.749 -22.129 -70.034 1 150.7 ? C4' GNP 200 A 1 HETATM 16 O O4' GNP . . . M 4 -2.609 -21.493 -70.672 1 152.66 ? O4' GNP 200 A 1 HETATM 17 C C3' GNP . . . M 4 -4.963 -21.261 -70.342 1 140.46 ? C3' GNP 200 A 1 HETATM 18 O O3' GNP . . . M 4 -5.155 -20.352 -69.278 1 144.19 ? O3' GNP 200 A 1 HETATM 19 C C2' GNP . . . M 4 -4.518 -20.561 -71.615 1 146.51 ? C2' GNP 200 A 1 HETATM 20 O O2' GNP . . . M 4 -5.139 -19.316 -71.842 1 156.74 ? O2' GNP 200 A 1 HETATM 21 C C1' GNP . . . M 4 -3.043 -20.333 -71.337 1 149.68 ? C1' GNP 200 A 1 HETATM 22 N N9 GNP . . . M 4 -2.35 -20.187 -72.604 1 150.16 ? N9 GNP 200 A 1 HETATM 23 C C8 GNP . . . M 4 -2.47 -21.016 -73.688 1 146.02 ? C8 GNP 200 A 1 HETATM 24 N N7 GNP . . . M 4 -1.753 -20.638 -74.703 1 148.34 ? N7 GNP 200 A 1 HETATM 25 C C5 GNP . . . M 4 -1.12 -19.484 -74.263 1 150.84 ? C5 GNP 200 A 1 HETATM 26 C C6 GNP . . . M 4 -0.219 -18.632 -74.935 1 148.47 ? C6 GNP 200 A 1 HETATM 27 O O6 GNP . . . M 4 0.218 -18.73 -76.089 1 149.65 ? O6 GNP 200 A 1 HETATM 28 N N1 GNP . . . M 4 0.171 -17.572 -74.126 1 148.61 ? N1 GNP 200 A 1 HETATM 29 C C2 GNP . . . M 4 -0.241 -17.361 -72.832 1 153.71 ? C2 GNP 200 A 1 HETATM 30 N N2 GNP . . . M 4 0.255 -16.277 -72.204 1 149.24 ? N2 GNP 200 A 1 HETATM 31 N N3 GNP . . . M 4 -1.088 -18.159 -72.192 1 156.89 ? N3 GNP 200 A 1 HETATM 32 C C4 GNP . . . M 4 -1.483 -19.192 -72.971 1 150.71 ? C4 GNP 200 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #