data_4UM1 # _model_server_result.job_id ACx9PztiDfGsw-sUWnWQ1w _model_server_result.datetime_utc '2025-02-05 11:45:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4um1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1206}' # _entry.id 4UM1 # _exptl.entry_id 4UM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UM1 _cell.length_a 77.328 _cell.length_b 123.104 _cell.length_c 127.45 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 142 A CYS 123 1_555 A SG CYS 155 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 206 A CYS 187 1_555 A SG CYS 207 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 B SG CYS 142 B CYS 123 1_555 B SG CYS 155 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 206 B CYS 187 1_555 B SG CYS 207 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 C SG CYS 142 C CYS 123 1_555 C SG CYS 155 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 C SG CYS 206 C CYS 187 1_555 C SG CYS 207 C CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf7 D SG CYS 142 D CYS 123 1_555 D SG CYS 155 D CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 D SG CYS 206 D CYS 187 1_555 D SG CYS 207 D CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 E SG CYS 142 E CYS 123 1_555 E SG CYS 155 E CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf10 E SG CYS 206 E CYS 187 1_555 E SG CYS 207 E CYS 188 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 D ND2 ASN 85 D ASN 66 1_555 J C1 NAG . D NAG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 273 n n C1 O1 NAG sing 274 n n C1 O5 NAG sing 275 n n C1 H1 NAG sing 276 n n C2 C3 NAG sing 277 n n C2 N2 NAG sing 278 n n C2 H2 NAG sing 279 n n C3 C4 NAG sing 280 n n C3 O3 NAG sing 281 n n C3 H3 NAG sing 282 n n C4 C5 NAG sing 283 n n C4 O4 NAG sing 284 n n C4 H4 NAG sing 285 n n C5 C6 NAG sing 286 n n C5 O5 NAG sing 287 n n C5 H5 NAG sing 288 n n C6 O6 NAG sing 289 n n C6 H61 NAG sing 290 n n C6 H62 NAG sing 291 n n C7 C8 NAG sing 292 n n C7 N2 NAG sing 293 n n C7 O7 NAG doub 294 n n C8 H81 NAG sing 295 n n C8 H82 NAG sing 296 n n C8 H83 NAG sing 297 n n N2 HN2 NAG sing 298 n n O1 HO1 NAG sing 299 n n O3 HO3 NAG sing 300 n n O4 HO4 NAG sing 301 n n O6 HO6 NAG sing 302 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4UM1 _atom_sites.fract_transf_matrix[1][1] 0.012932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 09P A 1 211 211 09P 09P . G 2 09P B 1 211 211 09P 09P . H 2 09P C 1 211 211 09P 09P . I 2 09P D 1 211 211 09P 09P . J 3 NAG D 1 1206 1206 NAG NAG . K 2 09P E 1 211 211 09P 09P . L 4 HOH A 1 2001 2001 HOH HOH . L 4 HOH A 2 2002 2002 HOH HOH . L 4 HOH A 3 2003 2003 HOH HOH . L 4 HOH A 4 2004 2004 HOH HOH . L 4 HOH A 5 2005 2005 HOH HOH . L 4 HOH A 6 2006 2006 HOH HOH . L 4 HOH A 7 2007 2007 HOH HOH . L 4 HOH A 8 2008 2008 HOH HOH . L 4 HOH A 9 2009 2009 HOH HOH . L 4 HOH A 10 2010 2010 HOH HOH . L 4 HOH A 11 2011 2011 HOH HOH . L 4 HOH A 12 2012 2012 HOH HOH . L 4 HOH A 13 2013 2013 HOH HOH . L 4 HOH A 14 2014 2014 HOH HOH . L 4 HOH A 15 2015 2015 HOH HOH . L 4 HOH A 16 2016 2016 HOH HOH . L 4 HOH A 17 2017 2017 HOH HOH . L 4 HOH A 18 2018 2018 HOH HOH . L 4 HOH A 19 2019 2019 HOH HOH . L 4 HOH A 20 2020 2020 HOH HOH . L 4 HOH A 21 2021 2021 HOH HOH . L 4 HOH A 22 2022 2022 HOH HOH . L 4 HOH A 23 2023 2023 HOH HOH . L 4 HOH A 24 2024 2024 HOH HOH . L 4 HOH A 25 2025 2025 HOH HOH . L 4 HOH A 26 2026 2026 HOH HOH . L 4 HOH A 27 2027 2027 HOH HOH . M 4 HOH B 1 2001 2001 HOH HOH . M 4 HOH B 2 2002 2002 HOH HOH . M 4 HOH B 3 2003 2003 HOH HOH . M 4 HOH B 4 2004 2004 HOH HOH . M 4 HOH B 5 2005 2005 HOH HOH . M 4 HOH B 6 2006 2006 HOH HOH . M 4 HOH B 7 2007 2007 HOH HOH . M 4 HOH B 8 2008 2008 HOH HOH . M 4 HOH B 9 2009 2009 HOH HOH . M 4 HOH B 10 2010 2010 HOH HOH . M 4 HOH B 11 2011 2011 HOH HOH . M 4 HOH B 12 2012 2012 HOH HOH . M 4 HOH B 13 2013 2013 HOH HOH . M 4 HOH B 14 2014 2014 HOH HOH . M 4 HOH B 15 2015 2015 HOH HOH . M 4 HOH B 16 2016 2016 HOH HOH . M 4 HOH B 17 2017 2017 HOH HOH . M 4 HOH B 18 2018 2018 HOH HOH . M 4 HOH B 19 2019 2019 HOH HOH . M 4 HOH B 20 2020 2020 HOH HOH . M 4 HOH B 21 2021 2021 HOH HOH . M 4 HOH B 22 2022 2022 HOH HOH . M 4 HOH B 23 2023 2023 HOH HOH . M 4 HOH B 24 2024 2024 HOH HOH . N 4 HOH C 1 2001 2001 HOH HOH . N 4 HOH C 2 2002 2002 HOH HOH . N 4 HOH C 3 2003 2003 HOH HOH . N 4 HOH C 4 2004 2004 HOH HOH . N 4 HOH C 5 2005 2005 HOH HOH . N 4 HOH C 6 2006 2006 HOH HOH . N 4 HOH C 7 2007 2007 HOH HOH . N 4 HOH C 8 2008 2008 HOH HOH . N 4 HOH C 9 2009 2009 HOH HOH . N 4 HOH C 10 2010 2010 HOH HOH . N 4 HOH C 11 2011 2011 HOH HOH . N 4 HOH C 12 2012 2012 HOH HOH . N 4 HOH C 13 2013 2013 HOH HOH . N 4 HOH C 14 2014 2014 HOH HOH . N 4 HOH C 15 2015 2015 HOH HOH . N 4 HOH C 16 2016 2016 HOH HOH . N 4 HOH C 17 2017 2017 HOH HOH . O 4 HOH D 1 2001 2001 HOH HOH . O 4 HOH D 2 2002 2002 HOH HOH . O 4 HOH D 3 2003 2003 HOH HOH . O 4 HOH D 4 2004 2004 HOH HOH . O 4 HOH D 5 2005 2005 HOH HOH . O 4 HOH D 6 2006 2006 HOH HOH . O 4 HOH D 7 2007 2007 HOH HOH . O 4 HOH D 8 2008 2008 HOH HOH . O 4 HOH D 9 2009 2009 HOH HOH . O 4 HOH D 10 2010 2010 HOH HOH . O 4 HOH D 11 2011 2011 HOH HOH . O 4 HOH D 12 2012 2012 HOH HOH . O 4 HOH D 13 2013 2013 HOH HOH . O 4 HOH D 14 2014 2014 HOH HOH . O 4 HOH D 15 2015 2015 HOH HOH . O 4 HOH D 16 2016 2016 HOH HOH . O 4 HOH D 17 2017 2017 HOH HOH . O 4 HOH D 18 2018 2018 HOH HOH . O 4 HOH D 19 2019 2019 HOH HOH . O 4 HOH D 20 2020 2020 HOH HOH . O 4 HOH D 21 2021 2021 HOH HOH . O 4 HOH D 22 2022 2022 HOH HOH . O 4 HOH D 23 2023 2023 HOH HOH . O 4 HOH D 24 2024 2024 HOH HOH . O 4 HOH D 25 2025 2025 HOH HOH . O 4 HOH D 26 2026 2026 HOH HOH . P 4 HOH E 1 2001 2001 HOH HOH . P 4 HOH E 2 2002 2002 HOH HOH . P 4 HOH E 3 2003 2003 HOH HOH . P 4 HOH E 4 2004 2004 HOH HOH . P 4 HOH E 5 2005 2005 HOH HOH . P 4 HOH E 6 2006 2006 HOH HOH . P 4 HOH E 7 2007 2007 HOH HOH . P 4 HOH E 8 2008 2008 HOH HOH . P 4 HOH E 9 2009 2009 HOH HOH . P 4 HOH E 10 2010 2010 HOH HOH . P 4 HOH E 11 2011 2011 HOH HOH . P 4 HOH E 12 2012 2012 HOH HOH . P 4 HOH E 13 2013 2013 HOH HOH . P 4 HOH E 14 2014 2014 HOH HOH . P 4 HOH E 15 2015 2015 HOH HOH . P 4 HOH E 16 2016 2016 HOH HOH . P 4 HOH E 17 2017 2017 HOH HOH . P 4 HOH E 18 2018 2018 HOH HOH . P 4 HOH E 19 2019 2019 HOH HOH . P 4 HOH E 20 2020 2020 HOH HOH . P 4 HOH E 21 2021 2021 HOH HOH . P 4 HOH E 22 2022 2022 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 3 -14.38 65.862 -61.881 1 44.52 ? C1 NAG 1206 D 1 HETATM 2 C C2 NAG . . . J 3 -15.314 67.029 -61.552 1 49.39 ? C2 NAG 1206 D 1 HETATM 3 C C3 NAG . . . J 3 -15.589 67.65 -62.903 1 50.82 ? C3 NAG 1206 D 1 HETATM 4 C C4 NAG . . . J 3 -14.319 68.168 -63.561 1 50.83 ? C4 NAG 1206 D 1 HETATM 5 C C5 NAG . . . J 3 -13.215 67.111 -63.743 1 50.1 ? C5 NAG 1206 D 1 HETATM 6 C C6 NAG . . . J 3 -11.853 67.811 -64.052 1 50.28 ? C6 NAG 1206 D 1 HETATM 7 C C7 NAG . . . J 3 -17.219 66.889 -59.808 1 51.12 ? C7 NAG 1206 D 1 HETATM 8 C C8 NAG . . . J 3 -16.481 67.584 -58.699 1 53.33 ? C8 NAG 1206 D 1 HETATM 9 N N2 NAG . . . J 3 -16.625 66.678 -61.008 1 51.97 ? N2 NAG 1206 D 1 HETATM 10 O O3 NAG . . . J 3 -16.401 68.744 -62.62 1 52.02 ? O3 NAG 1206 D 1 HETATM 11 O O4 NAG . . . J 3 -14.603 68.937 -64.713 1 52.34 ? O4 NAG 1206 D 1 HETATM 12 O O5 NAG . . . J 3 -13.19 66.227 -62.622 1 47.14 ? O5 NAG 1206 D 1 HETATM 13 O O6 NAG . . . J 3 -10.599 67.211 -63.71 1 54.69 ? O6 NAG 1206 D 1 HETATM 14 O O7 NAG . . . J 3 -18.364 66.519 -59.536 1 53.65 ? O7 NAG 1206 D 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #