data_4UOA # _model_server_result.job_id ZfFk0SDHlkCSYy0RT_qEaw _model_server_result.datetime_utc '2024-10-18 00:37:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uoa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":651}' # _entry.id 4UOA # _exptl.entry_id 4UOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UOA _cell.length_a 99.678 _cell.length_b 99.678 _cell.length_c 397.212 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 49.839 -86.32368 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 99.678 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 5 4 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 601 NAG 3 n C NAG 2 C 2 NAG A 602 NAG 4 n D NAG 1 D 1 NAG A 611 NAG 4 n D NAG 2 D 2 NAG A 612 NAG 4 n D BMA 3 D 3 BMA A 613 BMA 4 n E NAG 1 E 1 NAG A 621 NAG 4 n E NAG 2 E 2 NAG A 622 NAG 4 n E BMA 3 E 3 BMA A 623 BMA 5 n F NAG 1 F 1 NAG A 631 NAG 5 n F NAG 2 F 2 NAG A 632 NAG 5 n F BMA 3 F 3 BMA A 633 BMA 5 n F MAN 4 F 4 MAN A 637 MAN 5 n G NAG 1 G 1 NAG A 641 NAG 5 n G NAG 2 G 2 NAG A 642 NAG 5 n G BMA 3 G 3 BMA A 643 BMA 5 n G MAN 4 G 4 MAN A 647 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf2 A SG CYS 50 A CYS 52 1_555 A SG CYS 275 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 62 A CYS 64 1_555 A SG CYS 74 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 A SG CYS 95 A CYS 97 1_555 A SG CYS 137 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 279 A CYS 281 1_555 A SG CYS 303 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? covale ? covale1 A ND2 ASN 6 A ASN 8 1_555 H C1 NAG . A NAG 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A ND2 ASN 20 A ASN 22 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 36 A ASN 38 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 A ND2 ASN 61 A ASN 63 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 A ND2 ASN 163 A ASN 165 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 A ND2 ASN 283 A ASN 285 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale9 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale11 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 F O6 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale15 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale16 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale17 G O6 BMA . G BMA 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 285 n n C1 O1 NAG sing 286 n n C1 O5 NAG sing 287 n n C1 H1 NAG sing 288 n n C2 C3 NAG sing 289 n n C2 N2 NAG sing 290 n n C2 H2 NAG sing 291 n n C3 C4 NAG sing 292 n n C3 O3 NAG sing 293 n n C3 H3 NAG sing 294 n n C4 C5 NAG sing 295 n n C4 O4 NAG sing 296 n n C4 H4 NAG sing 297 n n C5 C6 NAG sing 298 n n C5 O5 NAG sing 299 n n C5 H5 NAG sing 300 n n C6 O6 NAG sing 301 n n C6 H61 NAG sing 302 n n C6 H62 NAG sing 303 n n C7 C8 NAG sing 304 n n C7 N2 NAG sing 305 n n C7 O7 NAG doub 306 n n C8 H81 NAG sing 307 n n C8 H82 NAG sing 308 n n C8 H83 NAG sing 309 n n N2 HN2 NAG sing 310 n n O1 HO1 NAG sing 311 n n O3 HO3 NAG sing 312 n n O4 HO4 NAG sing 313 n n O6 HO6 NAG sing 314 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4UOA _atom_sites.fract_transf_matrix[1][1] 0.010032 _atom_sites.fract_transf_matrix[1][2] 0.005792 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 NAG A 1 651 651 NAG NAG . I 7 SO4 A 1 1327 1327 SO4 SO4 . J 7 SO4 A 1 1328 1328 SO4 SO4 . K 7 SO4 A 1 1329 1329 SO4 SO4 . L 7 SO4 B 1 1173 1173 SO4 SO4 . M 8 HOH A 1 2001 2001 HOH HOH . M 8 HOH A 2 2002 2002 HOH HOH . M 8 HOH A 3 2003 2003 HOH HOH . M 8 HOH A 4 2004 2004 HOH HOH . M 8 HOH A 5 2005 2005 HOH HOH . M 8 HOH A 6 2006 2006 HOH HOH . M 8 HOH A 7 2007 2007 HOH HOH . M 8 HOH A 8 2008 2008 HOH HOH . M 8 HOH A 9 2009 2009 HOH HOH . M 8 HOH A 10 2010 2010 HOH HOH . M 8 HOH A 11 2011 2011 HOH HOH . M 8 HOH A 12 2012 2012 HOH HOH . M 8 HOH A 13 2013 2013 HOH HOH . M 8 HOH A 14 2014 2014 HOH HOH . M 8 HOH A 15 2015 2015 HOH HOH . M 8 HOH A 16 2016 2016 HOH HOH . M 8 HOH A 17 2017 2017 HOH HOH . M 8 HOH A 18 2018 2018 HOH HOH . M 8 HOH A 19 2019 2019 HOH HOH . M 8 HOH A 20 2020 2020 HOH HOH . M 8 HOH A 21 2021 2021 HOH HOH . M 8 HOH A 22 2022 2022 HOH HOH . M 8 HOH A 23 2023 2023 HOH HOH . M 8 HOH A 24 2024 2024 HOH HOH . M 8 HOH A 25 2025 2025 HOH HOH . M 8 HOH A 26 2026 2026 HOH HOH . M 8 HOH A 27 2027 2027 HOH HOH . N 8 HOH B 1 2001 2001 HOH HOH . N 8 HOH B 2 2002 2002 HOH HOH . N 8 HOH B 3 2003 2003 HOH HOH . N 8 HOH B 4 2004 2004 HOH HOH . N 8 HOH B 5 2005 2005 HOH HOH . N 8 HOH B 6 2006 2006 HOH HOH . N 8 HOH B 7 2007 2007 HOH HOH . N 8 HOH B 8 2008 2008 HOH HOH . N 8 HOH B 9 2009 2009 HOH HOH . N 8 HOH B 10 2010 2010 HOH HOH . N 8 HOH B 11 2011 2011 HOH HOH . N 8 HOH B 12 2012 2012 HOH HOH . N 8 HOH B 13 2013 2013 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 6 33.619 -42.123 16.434 1 101.03 ? C1 NAG 651 A 1 HETATM 2 C C2 NAG . . . H 6 33.92 -43.01 17.645 1 102.69 ? C2 NAG 651 A 1 HETATM 3 C C3 NAG . . . H 6 33.189 -42.475 18.893 1 106.73 ? C3 NAG 651 A 1 HETATM 4 C C4 NAG . . . H 6 31.816 -41.85 18.596 1 108.71 ? C4 NAG 651 A 1 HETATM 5 C C5 NAG . . . H 6 31.924 -40.82 17.463 1 105.46 ? C5 NAG 651 A 1 HETATM 6 C C6 NAG . . . H 6 31.609 -39.393 17.915 1 104.62 ? C6 NAG 651 A 1 HETATM 7 C C7 NAG . . . H 6 32.787 -45.286 17.713 1 103.34 ? C7 NAG 651 A 1 HETATM 8 C C8 NAG . . . H 6 32.839 -46.663 17.111 1 103.23 ? C8 NAG 651 A 1 HETATM 9 N N2 NAG . . . H 6 33.711 -44.415 17.261 1 102.55 ? N2 NAG 651 A 1 HETATM 10 O O3 NAG . . . H 6 33.995 -41.465 19.463 1 105.41 ? O3 NAG 651 A 1 HETATM 11 O O4 NAG . . . H 6 30.851 -42.836 18.263 1 108.94 ? O4 NAG 651 A 1 HETATM 12 O O5 NAG . . . H 6 33.233 -40.847 16.923 1 102.03 ? O5 NAG 651 A 1 HETATM 13 O O6 NAG . . . H 6 30.221 -39.15 17.83 1 104.74 ? O6 NAG 651 A 1 HETATM 14 O O7 NAG . . . H 6 31.922 -45.056 18.559 1 101.11 ? O7 NAG 651 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #