data_4UP9 # _model_server_result.job_id 8kNoaLyfZQ5oqPe_tYbtOg _model_server_result.datetime_utc '2025-01-18 08:13:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4up9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1584}' # _entry.id 4UP9 # _exptl.entry_id 4UP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UP9 _cell.length_a 155.551 _cell.length_b 155.551 _cell.length_c 92.926 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -155.551 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4UP9 _atom_sites.fract_transf_matrix[1][1] 0.006429 _atom_sites.fract_transf_matrix[1][2] 0.003712 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ATP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1584 _pdbx_nonpoly_scheme.auth_seq_num 1584 _pdbx_nonpoly_scheme.pdb_mon_id ATP _pdbx_nonpoly_scheme.auth_mon_id ATP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -56.895 1.944 -6.132 1 139.69 ? PG ATP 1584 A 1 HETATM 2 O O1G ATP . . . B 2 -58.013 2.93 -6.345 1 142.26 ? O1G ATP 1584 A 1 HETATM 3 O O2G ATP . . . B 2 -55.998 1.777 -7.336 1 139.81 ? O2G ATP 1584 A 1 HETATM 4 O O3G ATP . . . B 2 -56.158 2.088 -4.821 1 149.7 ? O3G ATP 1584 A 1 HETATM 5 P PB ATP . . . B 2 -58.37 0.053 -4.641 1 199.65 ? PB ATP 1584 A 1 HETATM 6 O O1B ATP . . . B 2 -57.417 -0.83 -3.872 1 204.99 ? O1B ATP 1584 A 1 HETATM 7 O O2B ATP . . . B 2 -58.977 1.266 -3.974 1 199.18 ? O2B ATP 1584 A 1 HETATM 8 O O3B ATP . . . B 2 -57.661 0.531 -6.009 1 183.14 ? O3B ATP 1584 A 1 HETATM 9 P PA ATP . . . B 2 -59.332 -2.154 -6.131 1 126.95 ? PA ATP 1584 A 1 HETATM 10 O O1A ATP . . . B 2 -57.875 -2.252 -6.511 1 124.38 ? O1A ATP 1584 A 1 HETATM 11 O O2A ATP . . . B 2 -60.043 -3.354 -5.547 1 127.73 ? O2A ATP 1584 A 1 HETATM 12 O O3A ATP . . . B 2 -59.572 -0.864 -5.193 1 171.31 ? O3A ATP 1584 A 1 HETATM 13 O O5' ATP . . . B 2 -60.148 -1.64 -7.421 1 123.04 ? O5' ATP 1584 A 1 HETATM 14 C C5' ATP . . . B 2 -60.623 -2.492 -8.458 1 122.16 ? C5' ATP 1584 A 1 HETATM 15 C C4' ATP . . . B 2 -61.371 -1.617 -9.462 1 117.25 ? C4' ATP 1584 A 1 HETATM 16 O O4' ATP . . . B 2 -62.481 -0.984 -8.824 1 104.78 ? O4' ATP 1584 A 1 HETATM 17 C C3' ATP . . . B 2 -60.489 -0.513 -10.026 1 114.61 ? C3' ATP 1584 A 1 HETATM 18 O O3' ATP . . . B 2 -60.374 -0.664 -11.446 1 115.71 ? O3' ATP 1584 A 1 HETATM 19 C C2' ATP . . . B 2 -61.203 0.787 -9.749 1 101.88 ? C2' ATP 1584 A 1 HETATM 20 O O2' ATP . . . B 2 -61.383 1.445 -11.003 1 100.42 ? O2' ATP 1584 A 1 HETATM 21 C C1' ATP . . . B 2 -62.552 0.4 -9.168 1 96.9 ? C1' ATP 1584 A 1 HETATM 22 N N9 ATP . . . B 2 -62.879 1.159 -7.935 1 89.34 ? N9 ATP 1584 A 1 HETATM 23 C C8 ATP . . . B 2 -62.74 0.69 -6.681 1 91.7 ? C8 ATP 1584 A 1 HETATM 24 N N7 ATP . . . B 2 -63.134 1.605 -5.76 1 84.15 ? N7 ATP 1584 A 1 HETATM 25 C C5 ATP . . . B 2 -63.548 2.69 -6.434 1 76.44 ? C5 ATP 1584 A 1 HETATM 26 C C6 ATP . . . B 2 -64.094 4.016 -6.068 1 76.79 ? C6 ATP 1584 A 1 HETATM 27 N N6 ATP . . . B 2 -64.274 4.357 -4.771 1 78.15 ? N6 ATP 1584 A 1 HETATM 28 N N1 ATP . . . B 2 -64.401 4.864 -7.072 1 81.07 ? N1 ATP 1584 A 1 HETATM 29 C C2 ATP . . . B 2 -64.224 4.524 -8.364 1 83.29 ? C2 ATP 1584 A 1 HETATM 30 N N3 ATP . . . B 2 -63.737 3.337 -8.77 1 81.44 ? N3 ATP 1584 A 1 HETATM 31 C C4 ATP . . . B 2 -63.384 2.393 -7.866 1 78.3 ? C4 ATP 1584 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #