data_4UQH # _model_server_result.job_id n4AKyqyIddILEIZjntA0-g _model_server_result.datetime_utc '2024-10-13 13:16:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1485}' # _entry.id 4UQH # _exptl.entry_id 4UQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 598.618 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl)-4-(4-(3,4-difluorophenyl)piperazin-1-yl)-2-fluorobenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UQH _cell.length_a 128.394 _cell.length_b 128.394 _cell.length_c 116.573 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -64.197 111.192466 0 3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 64.197 111.192466 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 402 A CYS 422 1_555 B FE HEM . A HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 B FE HEM . A HEM 1450 1_555 J N 25S . A 25S 1485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'C33 H29 F3 N6 O2' _chem_comp.formula_weight 598.618 _chem_comp.id 25S _chem_comp.mon_nstd_flag . _chem_comp.name (R)-N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl)-4-(4-(3,4-difluorophenyl)piperazin-1-yl)-2-fluorobenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C5 25S doub 1 n n C5 N1 25S sing 2 n n C5 C6 25S sing 3 n n N1 C4 25S sing 4 n n C4 C3 25S doub 5 n y C4 C 25S sing 6 n y C3 C2 25S sing 7 n y C2 N 25S doub 8 n y N C1 25S sing 9 n y C1 C 25S doub 10 n y C6 C24 25S sing 11 n n C6 N2 25S sing 12 n n C24 C25 25S sing 13 n n C25 C28 25S sing 14 n y C25 C26 25S doub 15 n y C28 C29 25S sing 16 n y C28 C27 25S doub 17 n y C29 C30 25S doub 18 n y C30 C31 25S sing 19 n y C31 C32 25S doub 20 n y C32 C27 25S sing 21 n y C27 N5 25S sing 22 n y N5 C26 25S sing 23 n y N2 C7 25S sing 24 n n C7 O 25S doub 25 n n C7 C8 25S sing 26 n n C8 C23 25S sing 27 n y C8 C9 25S doub 28 n y C23 F2 25S sing 29 n n C23 C22 25S doub 30 n y C22 C11 25S sing 31 n y C11 C10 25S doub 32 n y C11 N3 25S sing 33 n n C10 C9 25S sing 34 n y N3 C21 25S sing 35 n n N3 C12 25S sing 36 n n C21 C20 25S sing 37 n n C20 N4 25S sing 38 n n N4 C13 25S sing 39 n n N4 C14 25S sing 40 n n C13 C12 25S sing 41 n n C14 C19 25S sing 42 n y C14 C15 25S doub 43 n y C19 C18 25S doub 44 n y C18 C17 25S sing 45 n y C17 F1 25S sing 46 n n C17 C16 25S doub 47 n y C16 F 25S sing 48 n n C16 C15 25S sing 49 n y N1 H1 25S sing 50 n n C6 H6 25S sing 51 n n C3 H3 25S sing 52 n n C H 25S sing 53 n n C2 H2 25S sing 54 n n C1 HA 25S sing 55 n n C24 H241 25S sing 56 n n C24 H242 25S sing 57 n n N2 HB 25S sing 58 n n C26 H26 25S sing 59 n n C29 H29 25S sing 60 n n C30 H30 25S sing 61 n n C31 H31 25S sing 62 n n C32 H32 25S sing 63 n n N5 H5 25S sing 64 n n C9 H9 25S sing 65 n n C22 H22 25S sing 66 n n C10 H10 25S sing 67 n n C21 H211 25S sing 68 n n C21 H212 25S sing 69 n n C12 H121 25S sing 70 n n C12 H122 25S sing 71 n n C20 H201 25S sing 72 n n C20 H202 25S sing 73 n n C13 H131 25S sing 74 n n C13 H132 25S sing 75 n n C19 H19 25S sing 76 n n C15 H15 25S sing 77 n n C18 H18 25S sing 78 n n # _atom_sites.entry_id 4UQH _atom_sites.fract_transf_matrix[1][1] 0.007789 _atom_sites.fract_transf_matrix[1][2] 0.004497 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 1450 1450 HEM HEM . C 3 SO4 A 1 1478 1478 SO4 SO4 . D 3 SO4 A 1 1479 1479 SO4 SO4 . E 3 SO4 A 1 1480 1480 SO4 SO4 . F 3 SO4 A 1 1481 1481 SO4 SO4 . G 3 SO4 A 1 1482 1482 SO4 SO4 . H 3 SO4 A 1 1483 1483 SO4 SO4 . I 3 SO4 A 1 1484 1484 SO4 SO4 . J 4 25S A 1 1485 1485 25S 25S . K 5 HOH A 1 2001 2001 HOH HOH . K 5 HOH A 2 2002 2002 HOH HOH . K 5 HOH A 3 2003 2003 HOH HOH . K 5 HOH A 4 2004 2004 HOH HOH . K 5 HOH A 5 2005 2005 HOH HOH . K 5 HOH A 6 2006 2006 HOH HOH . K 5 HOH A 7 2007 2007 HOH HOH . K 5 HOH A 8 2008 2008 HOH HOH . K 5 HOH A 9 2009 2009 HOH HOH . K 5 HOH A 10 2010 2010 HOH HOH . K 5 HOH A 11 2011 2011 HOH HOH . K 5 HOH A 12 2012 2012 HOH HOH . K 5 HOH A 13 2013 2013 HOH HOH . K 5 HOH A 14 2014 2014 HOH HOH . K 5 HOH A 15 2015 2015 HOH HOH . K 5 HOH A 16 2016 2016 HOH HOH . K 5 HOH A 17 2017 2017 HOH HOH . K 5 HOH A 18 2018 2018 HOH HOH . K 5 HOH A 19 2019 2019 HOH HOH . K 5 HOH A 20 2020 2020 HOH HOH . K 5 HOH A 21 2021 2021 HOH HOH . K 5 HOH A 22 2022 2022 HOH HOH . K 5 HOH A 23 2023 2023 HOH HOH . K 5 HOH A 24 2024 2024 HOH HOH . K 5 HOH A 25 2025 2025 HOH HOH . K 5 HOH A 26 2026 2026 HOH HOH . K 5 HOH A 27 2027 2027 HOH HOH . K 5 HOH A 28 2028 2028 HOH HOH . K 5 HOH A 29 2029 2029 HOH HOH . K 5 HOH A 30 2030 2030 HOH HOH . K 5 HOH A 31 2031 2031 HOH HOH . K 5 HOH A 32 2032 2032 HOH HOH . K 5 HOH A 33 2033 2033 HOH HOH . K 5 HOH A 34 2034 2034 HOH HOH . K 5 HOH A 35 2035 2035 HOH HOH . K 5 HOH A 36 2036 2036 HOH HOH . K 5 HOH A 37 2037 2037 HOH HOH . K 5 HOH A 38 2038 2038 HOH HOH . K 5 HOH A 39 2039 2039 HOH HOH . K 5 HOH A 40 2040 2040 HOH HOH . K 5 HOH A 41 2041 2041 HOH HOH . K 5 HOH A 42 2042 2042 HOH HOH . K 5 HOH A 43 2043 2043 HOH HOH . K 5 HOH A 44 2044 2044 HOH HOH . K 5 HOH A 45 2045 2045 HOH HOH . K 5 HOH A 46 2046 2046 HOH HOH . K 5 HOH A 47 2047 2047 HOH HOH . K 5 HOH A 48 2048 2048 HOH HOH . K 5 HOH A 49 2049 2049 HOH HOH . K 5 HOH A 50 2050 2050 HOH HOH . K 5 HOH A 51 2051 2051 HOH HOH . K 5 HOH A 52 2052 2052 HOH HOH . K 5 HOH A 53 2053 2053 HOH HOH . K 5 HOH A 54 2054 2054 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 25S . . . J 4 -4.034 50.69 -5.454 1 31.75 ? O1 25S 1485 A 1 HETATM 2 C C5 25S . . . J 4 -4.786 51.651 -5.728 1 35.58 ? C5 25S 1485 A 1 HETATM 3 N N1 25S . . . J 4 -6.126 51.664 -5.564 1 33.8 ? N1 25S 1485 A 1 HETATM 4 C C4 25S . . . J 4 -6.828 50.561 -5.232 1 32.9 ? C4 25S 1485 A 1 HETATM 5 C C3 25S . . . J 4 -8.095 50.423 -5.803 1 35.41 ? C3 25S 1485 A 1 HETATM 6 C C2 25S . . . J 4 -8.851 49.258 -5.617 1 33.67 ? C2 25S 1485 A 1 HETATM 7 N N 25S . . . J 4 -8.398 48.218 -4.873 1 34.56 ? N 25S 1485 A 1 HETATM 8 C C1 25S . . . J 4 -7.153 48.316 -4.327 1 36.26 ? C1 25S 1485 A 1 HETATM 9 C C 25S . . . J 4 -6.336 49.472 -4.496 1 33.3 ? C 25S 1485 A 1 HETATM 10 C C6 25S . . . J 4 -4.199 52.921 -6.351 1 34.14 ? C6 25S 1485 A 1 HETATM 11 C C24 25S . . . J 4 -4.097 52.852 -7.874 1 38.41 ? C24 25S 1485 A 1 HETATM 12 C C25 25S . . . J 4 -5.454 52.596 -8.444 1 43.37 ? C25 25S 1485 A 1 HETATM 13 C C28 25S . . . J 4 -6.046 51.296 -8.797 1 45.66 ? C28 25S 1485 A 1 HETATM 14 C C29 25S . . . J 4 -5.564 50.014 -8.763 1 47.28 ? C29 25S 1485 A 1 HETATM 15 C C30 25S . . . J 4 -6.424 49.004 -9.201 1 47.83 ? C30 25S 1485 A 1 HETATM 16 C C31 25S . . . J 4 -7.721 49.272 -9.649 1 47.81 ? C31 25S 1485 A 1 HETATM 17 C C32 25S . . . J 4 -8.242 50.557 -9.691 1 49.88 ? C32 25S 1485 A 1 HETATM 18 C C27 25S . . . J 4 -7.413 51.599 -9.282 1 51.5 ? C27 25S 1485 A 1 HETATM 19 N N5 25S . . . J 4 -7.563 52.941 -9.204 1 50.62 ? N5 25S 1485 A 1 HETATM 20 C C26 25S . . . J 4 -6.445 53.547 -8.711 1 47.33 ? C26 25S 1485 A 1 HETATM 21 N N2 25S . . . J 4 -4.901 54.141 -6.016 1 34.29 ? N2 25S 1485 A 1 HETATM 22 C C7 25S . . . J 4 -4.807 54.655 -4.805 1 32.98 ? C7 25S 1485 A 1 HETATM 23 O O 25S . . . J 4 -4.206 54.047 -3.956 1 39.1 ? O 25S 1485 A 1 HETATM 24 C C8 25S . . . J 4 -5.398 55.972 -4.428 1 32.25 ? C8 25S 1485 A 1 HETATM 25 C C23 25S . . . J 4 -5.904 56.961 -5.399 1 32.3 ? C23 25S 1485 A 1 HETATM 26 F F2 25S . . . J 4 -5.882 56.706 -6.701 1 36.04 ? F2 25S 1485 A 1 HETATM 27 C C22 25S . . . J 4 -6.445 58.152 -4.959 1 34.29 ? C22 25S 1485 A 1 HETATM 28 C C11 25S . . . J 4 -6.506 58.429 -3.594 1 37.39 ? C11 25S 1485 A 1 HETATM 29 C C10 25S . . . J 4 -6.002 57.518 -2.67 1 36.11 ? C10 25S 1485 A 1 HETATM 30 C C9 25S . . . J 4 -5.46 56.309 -3.08 1 34.85 ? C9 25S 1485 A 1 HETATM 31 N N3 25S . . . J 4 -7.025 59.626 -3.14 1 42.06 ? N3 25S 1485 A 1 HETATM 32 C C21 25S . . . J 4 -8.244 60.129 -3.759 1 48.41 ? C21 25S 1485 A 1 HETATM 33 C C20 25S . . . J 4 -8.095 61.634 -3.672 1 46.02 ? C20 25S 1485 A 1 HETATM 34 N N4 25S . . . J 4 -8.336 61.816 -2.247 1 48.39 ? N4 25S 1485 A 1 HETATM 35 C C13 25S . . . J 4 -7.557 61.053 -1.268 1 48.28 ? C13 25S 1485 A 1 HETATM 36 C C12 25S . . . J 4 -6.405 60.363 -2.032 1 45.32 ? C12 25S 1485 A 1 HETATM 37 C C14 25S . . . J 4 -9.39 62.652 -1.879 1 55.49 ? C14 25S 1485 A 1 HETATM 38 C C19 25S . . . J 4 -10.613 62.277 -2.438 1 58.78 ? C19 25S 1485 A 1 HETATM 39 C C18 25S . . . J 4 -11.771 62.987 -2.207 1 61.07 ? C18 25S 1485 A 1 HETATM 40 C C17 25S . . . J 4 -11.701 64.088 -1.397 1 62.03 ? C17 25S 1485 A 1 HETATM 41 F F1 25S . . . J 4 -12.839 64.745 -1.194 1 74.69 ? F1 25S 1485 A 1 HETATM 42 C C16 25S . . . J 4 -10.42 64.528 -0.783 1 62.75 ? C16 25S 1485 A 1 HETATM 43 F F 25S . . . J 4 -10.421 65.635 0.005 1 71.17 ? F 25S 1485 A 1 HETATM 44 C C15 25S . . . J 4 -9.267 63.779 -1.053 1 55.24 ? C15 25S 1485 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #