data_4UQV # _model_server_result.job_id YhyrsafeAJRhSPLNfpg_cQ _model_server_result.datetime_utc '2024-10-19 22:37:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uqv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":1430}' # _entry.id 4UQV # _exptl.entry_id 4UQV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.02 _cell.angle_gamma 90 _cell.entry_id 4UQV _cell.length_a 123.13 _cell.length_b 47.16 _cell.length_c 344.079 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UQV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression K,L,W,X 1 1 A,B,M,N 2 1 C,D,O,P 3 1 E,F,Q,R 4 1 G,H,S,T 5 1 I,J,U,V 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 226 A LYS 226 1_555 M C4A PLP . A PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 B NZ LYS 226 B LYS 226 1_555 N C4A PLP . B PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 C NZ LYS 226 C LYS 226 1_555 O C4A PLP . C PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 D NZ LYS 226 D LYS 226 1_555 P C4A PLP . D PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 E NZ LYS 226 E LYS 226 1_555 Q C4A PLP . E PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 F NZ LYS 226 F LYS 226 1_555 R C4A PLP . F PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 G NZ LYS 226 G LYS 226 1_555 S C4A PLP . G PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 H NZ LYS 226 H LYS 226 1_555 T C4A PLP . H PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 I NZ LYS 226 I LYS 226 1_555 U C4A PLP . I PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale10 J NZ LYS 226 J LYS 226 1_555 V C4A PLP . J PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale11 K NZ LYS 226 K LYS 226 1_555 W C4A PLP . K PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 L NZ LYS 226 L LYS 226 1_555 X C4A PLP . L PLP 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 258 n y N1 C6 PLP sing 259 n y C2 C2A PLP sing 260 n n C2 C3 PLP sing 261 n y C2A H2A1 PLP sing 262 n n C2A H2A2 PLP sing 263 n n C2A H2A3 PLP sing 264 n n C3 O3 PLP sing 265 n n C3 C4 PLP doub 266 n y O3 HO3 PLP sing 267 n n C4 C4A PLP sing 268 n n C4 C5 PLP sing 269 n y C4A O4A PLP doub 270 n n C4A H4A PLP sing 271 n n C5 C6 PLP doub 272 n y C5 C5A PLP sing 273 n n C6 H6 PLP sing 274 n n C5A O4P PLP sing 275 n n C5A H5A1 PLP sing 276 n n C5A H5A2 PLP sing 277 n n O4P P PLP sing 278 n n P O1P PLP doub 279 n n P O2P PLP sing 280 n n P O3P PLP sing 281 n n O2P HOP2 PLP sing 282 n n O3P HOP3 PLP sing 283 n n # _atom_sites.entry_id 4UQV _atom_sites.fract_transf_matrix[1][1] 0.008121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 PLP A 1 1430 1430 PLP PLP . N 2 PLP B 1 1430 1430 PLP PLP . O 2 PLP C 1 1430 1430 PLP PLP . P 2 PLP D 1 1430 1430 PLP PLP . Q 2 PLP E 1 1430 1430 PLP PLP . R 2 PLP F 1 1430 1430 PLP PLP . S 2 PLP G 1 1430 1430 PLP PLP . T 2 PLP H 1 1430 1430 PLP PLP . U 2 PLP I 1 1430 1430 PLP PLP . V 2 PLP J 1 1430 1430 PLP PLP . W 2 PLP K 1 1430 1430 PLP PLP . X 2 PLP L 1 1430 1430 PLP PLP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . W 2 -6.392 31.067 126.332 1 59.22 ? N1 PLP 1430 K 1 HETATM 2 C C2 PLP . . . W 2 -7.159 31.264 125.256 1 59.17 ? C2 PLP 1430 K 1 HETATM 3 C C2A PLP . . . W 2 -8.474 31.968 125.413 1 59.09 ? C2A PLP 1430 K 1 HETATM 4 C C3 PLP . . . W 2 -6.761 30.823 124.013 1 59.32 ? C3 PLP 1430 K 1 HETATM 5 O O3 PLP . . . W 2 -7.563 31.036 122.921 1 59.38 ? O3 PLP 1430 K 1 HETATM 6 C C4 PLP . . . W 2 -5.535 30.161 123.863 1 59.55 ? C4 PLP 1430 K 1 HETATM 7 C C4A PLP . . . W 2 -5.137 29.693 122.48 1 59.89 ? C4A PLP 1430 K 1 HETATM 8 C C5 PLP . . . W 2 -4.75 29.97 125.013 1 59.59 ? C5 PLP 1430 K 1 HETATM 9 C C6 PLP . . . W 2 -5.215 30.438 126.237 1 59.41 ? C6 PLP 1430 K 1 HETATM 10 C C5A PLP . . . W 2 -3.412 29.268 124.969 1 59.95 ? C5A PLP 1430 K 1 HETATM 11 O O4P PLP . . . W 2 -2.704 29.138 126.135 1 60.06 ? O4P PLP 1430 K 1 HETATM 12 P P PLP . . . W 2 -1.916 30.366 126.671 1 59.47 ? P PLP 1430 K 1 HETATM 13 O O1P PLP . . . W 2 -0.447 30.061 126.584 1 59.83 ? O1P PLP 1430 K 1 HETATM 14 O O2P PLP . . . W 2 -2.266 31.573 125.831 1 58.8 ? O2P PLP 1430 K 1 HETATM 15 O O3P PLP . . . W 2 -2.31 30.598 128.106 1 59.46 ? O3P PLP 1430 K 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #