data_4URJ
#
_model_server_result.job_id            75BxxqJ2G27CEKal4ykWfQ 
_model_server_result.datetime_utc      '2025-01-22 04:26:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4urj 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1304}' 
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_entry.id    4URJ 
#
_exptl.entry_id    4URJ 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.27 
_cell.angle_gamma         90 
_cell.entry_id            4URJ 
_cell.length_a            78.12 
_cell.length_b            50.73 
_cell.length_c            120.29 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4URJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,L 1 1 
B,F,M 1 2 
C,D,G,H,I,J,K,N,O 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 0 50.73 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4URJ 
_atom_sites.fract_transf_matrix[1][1]    0.012801 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003495 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019712 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008617 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 EDO A 1 1305 1305 EDO EDO . 
F 2 EDO B 1 1305 1305 EDO EDO . 
G 2 EDO C 1 1304 1304 EDO EDO . 
H 2 EDO C 1 1305 1305 EDO EDO . 
I 2 EDO D 1 1305 1305 EDO EDO . 
J 2 EDO D 1 1306 1306 EDO EDO . 
K 2 EDO D 1 1307 1307 EDO EDO . 
L 3 HOH A 1 2001 2001 HOH HOH . 
L 3 HOH A 2 2002 2002 HOH HOH . 
L 3 HOH A 3 2003 2003 HOH HOH . 
L 3 HOH A 4 2004 2004 HOH HOH . 
L 3 HOH A 5 2005 2005 HOH HOH . 
L 3 HOH A 6 2006 2006 HOH HOH . 
L 3 HOH A 7 2007 2007 HOH HOH . 
L 3 HOH A 8 2008 2008 HOH HOH . 
L 3 HOH A 9 2009 2009 HOH HOH . 
L 3 HOH A 10 2010 2010 HOH HOH . 
L 3 HOH A 11 2011 2011 HOH HOH . 
L 3 HOH A 12 2012 2012 HOH HOH . 
L 3 HOH A 13 2013 2013 HOH HOH . 
L 3 HOH A 14 2014 2014 HOH HOH . 
L 3 HOH A 15 2015 2015 HOH HOH . 
L 3 HOH A 16 2016 2016 HOH HOH . 
L 3 HOH A 17 2017 2017 HOH HOH . 
L 3 HOH A 18 2018 2018 HOH HOH . 
L 3 HOH A 19 2019 2019 HOH HOH . 
L 3 HOH A 20 2020 2020 HOH HOH . 
L 3 HOH A 21 2021 2021 HOH HOH . 
L 3 HOH A 22 2022 2022 HOH HOH . 
L 3 HOH A 23 2023 2023 HOH HOH . 
L 3 HOH A 24 2024 2024 HOH HOH . 
M 3 HOH B 1 2001 2001 HOH HOH . 
M 3 HOH B 2 2002 2002 HOH HOH . 
M 3 HOH B 3 2003 2003 HOH HOH . 
M 3 HOH B 4 2004 2004 HOH HOH . 
M 3 HOH B 5 2005 2005 HOH HOH . 
M 3 HOH B 6 2006 2006 HOH HOH . 
M 3 HOH B 7 2007 2007 HOH HOH . 
M 3 HOH B 8 2008 2008 HOH HOH . 
M 3 HOH B 9 2009 2009 HOH HOH . 
M 3 HOH B 10 2010 2010 HOH HOH . 
M 3 HOH B 11 2011 2011 HOH HOH . 
M 3 HOH B 12 2012 2012 HOH HOH . 
M 3 HOH B 13 2013 2013 HOH HOH . 
M 3 HOH B 14 2014 2014 HOH HOH . 
M 3 HOH B 15 2015 2015 HOH HOH . 
M 3 HOH B 16 2016 2016 HOH HOH . 
M 3 HOH B 17 2017 2017 HOH HOH . 
M 3 HOH B 18 2018 2018 HOH HOH . 
M 3 HOH B 19 2019 2019 HOH HOH . 
M 3 HOH B 20 2020 2020 HOH HOH . 
M 3 HOH B 21 2021 2021 HOH HOH . 
M 3 HOH B 22 2022 2022 HOH HOH . 
M 3 HOH B 23 2023 2023 HOH HOH . 
M 3 HOH B 24 2024 2024 HOH HOH . 
M 3 HOH B 25 2025 2025 HOH HOH . 
M 3 HOH B 26 2026 2026 HOH HOH . 
M 3 HOH B 27 2027 2027 HOH HOH . 
M 3 HOH B 28 2028 2028 HOH HOH . 
M 3 HOH B 29 2029 2029 HOH HOH . 
M 3 HOH B 30 2030 2030 HOH HOH . 
N 3 HOH C 1 2001 2001 HOH HOH . 
N 3 HOH C 2 2002 2002 HOH HOH . 
N 3 HOH C 3 2003 2003 HOH HOH . 
N 3 HOH C 4 2004 2004 HOH HOH . 
N 3 HOH C 5 2005 2005 HOH HOH . 
N 3 HOH C 6 2006 2006 HOH HOH . 
N 3 HOH C 7 2007 2007 HOH HOH . 
N 3 HOH C 8 2008 2008 HOH HOH . 
N 3 HOH C 9 2009 2009 HOH HOH . 
N 3 HOH C 10 2010 2010 HOH HOH . 
N 3 HOH C 11 2011 2011 HOH HOH . 
N 3 HOH C 12 2012 2012 HOH HOH . 
N 3 HOH C 13 2013 2013 HOH HOH . 
N 3 HOH C 14 2014 2014 HOH HOH . 
N 3 HOH C 15 2015 2015 HOH HOH . 
N 3 HOH C 16 2016 2016 HOH HOH . 
N 3 HOH C 17 2017 2017 HOH HOH . 
N 3 HOH C 18 2018 2018 HOH HOH . 
N 3 HOH C 19 2019 2019 HOH HOH . 
N 3 HOH C 20 2020 2020 HOH HOH . 
N 3 HOH C 21 2021 2021 HOH HOH . 
N 3 HOH C 22 2022 2022 HOH HOH . 
N 3 HOH C 23 2023 2023 HOH HOH . 
N 3 HOH C 24 2024 2024 HOH HOH . 
N 3 HOH C 25 2025 2025 HOH HOH . 
N 3 HOH C 26 2026 2026 HOH HOH . 
N 3 HOH C 27 2027 2027 HOH HOH . 
N 3 HOH C 28 2028 2028 HOH HOH . 
N 3 HOH C 29 2029 2029 HOH HOH . 
O 3 HOH D 1 2001 2001 HOH HOH . 
O 3 HOH D 2 2002 2002 HOH HOH . 
O 3 HOH D 3 2003 2003 HOH HOH . 
O 3 HOH D 4 2004 2004 HOH HOH . 
O 3 HOH D 5 2005 2005 HOH HOH . 
O 3 HOH D 6 2006 2006 HOH HOH . 
O 3 HOH D 7 2007 2007 HOH HOH . 
O 3 HOH D 8 2008 2008 HOH HOH . 
O 3 HOH D 9 2009 2009 HOH HOH . 
O 3 HOH D 10 2010 2010 HOH HOH . 
O 3 HOH D 11 2011 2011 HOH HOH . 
O 3 HOH D 12 2012 2012 HOH HOH . 
O 3 HOH D 13 2013 2013 HOH HOH . 
O 3 HOH D 14 2014 2014 HOH HOH . 
O 3 HOH D 15 2015 2015 HOH HOH . 
O 3 HOH D 16 2016 2016 HOH HOH . 
O 3 HOH D 17 2017 2017 HOH HOH . 
O 3 HOH D 18 2018 2018 HOH HOH . 
O 3 HOH D 19 2019 2019 HOH HOH . 
O 3 HOH D 20 2020 2020 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 2 -13.436 23.226 14.311 1 26.92 ? C1 EDO 1304 C 1 
HETATM 2 O O1 EDO . . . G 2 -13.487 24.648 14.428 1 26.55 ? O1 EDO 1304 C 1 
HETATM 3 C C2 EDO . . . G 2 -12.091 22.74 14.829 1 25.72 ? C2 EDO 1304 C 1 
HETATM 4 O O2 EDO . . . G 2 -11.087 23.195 13.914 1 26.16 ? O2 EDO 1304 C 1 
HETATM 5 H H11 EDO . . . G 2 -12.081 21.65 14.888 1 30.87 ? H11 EDO 1304 C 1 
HETATM 6 H H12 EDO . . . G 2 -11.903 23.145 15.826 1 30.87 ? H12 EDO 1304 C 1 
HETATM 7 H HO1 EDO . . . G 2 -10.217 22.901 14.217 1 31.39 ? HO1 EDO 1304 C 1 
HETATM 8 H H21 EDO . . . G 2 -13.559 22.934 13.266 1 32.31 ? H21 EDO 1304 C 1 
HETATM 9 H H22 EDO . . . G 2 -14.243 22.775 14.891 1 32.31 ? H22 EDO 1304 C 1 
HETATM 10 H HO2 EDO . . . G 2 -14.339 24.968 14.101 1 31.86 ? HO2 EDO 1304 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#