data_4URK # _model_server_result.job_id UO9dRtzZ5JOEBvcuTb_uGQ _model_server_result.datetime_utc '2024-11-08 03:59:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4urk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2092}' # _entry.id 4URK # _exptl.entry_id 4URK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.45 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[(1R)-1-(7-methyl-2-morpholin-4-yl-4-oxidanylidene-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.71 _cell.angle_gamma 90 _cell.entry_id 4URK _cell.length_a 143.179 _cell.length_b 67.521 _cell.length_c 106.167 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4URK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H24 N4 O4' _chem_comp.formula_weight 408.45 _chem_comp.id A82 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[(1R)-1-(7-methyl-2-morpholin-4-yl-4-oxidanylidene-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A82 doub 1 n n C1 C17 A82 sing 2 n n C1 C20 A82 sing 3 n n C2 N3 A82 sing 4 n n N3 C4 A82 sing 5 n n N3 C8 A82 sing 6 n n C4 N5 A82 doub 7 n n C4 C16 A82 sing 8 n n N5 C6 A82 sing 9 n n C6 C7 A82 doub 10 n n C6 N10 A82 sing 11 n n C7 C8 A82 sing 12 n n C8 O9 A82 doub 13 n n N10 C11 A82 sing 14 n n N10 C15 A82 sing 15 n n C11 C12 A82 sing 16 n n C12 O13 A82 sing 17 n n O13 C14 A82 sing 18 n n C14 C15 A82 sing 19 n n C16 C17 A82 doub 20 n n C16 C18 A82 sing 21 n n C18 C19 A82 sing 22 n n C18 N21 A82 sing 23 n n N21 C22 A82 sing 24 n n C22 C24 A82 sing 25 n y C22 C26 A82 doub 26 n y C23 C24 A82 doub 27 n y C23 C25 A82 sing 28 n y C24 C28 A82 sing 29 n n C25 C27 A82 doub 30 n y C26 C27 A82 sing 31 n y C28 O29 A82 sing 32 n n C28 O30 A82 doub 33 n n C2 H2 A82 sing 34 n n C17 H17 A82 sing 35 n n C20 H201 A82 sing 36 n n C20 H202 A82 sing 37 n n C20 H203 A82 sing 38 n n C7 H7 A82 sing 39 n n C11 H111 A82 sing 40 n n C11 H112 A82 sing 41 n n C15 H151 A82 sing 42 n n C15 H152 A82 sing 43 n n C12 H121 A82 sing 44 n n C12 H122 A82 sing 45 n n C14 H141 A82 sing 46 n n C14 H142 A82 sing 47 n n C18 H18 A82 sing 48 n n C19 H191 A82 sing 49 n n C19 H192 A82 sing 50 n n C19 H193 A82 sing 51 n n N21 H21 A82 sing 52 n n C26 H26 A82 sing 53 n n C23 H23 A82 sing 54 n n C25 H25 A82 sing 55 n n C27 H27 A82 sing 56 n n O29 H29 A82 sing 57 n n # _atom_sites.entry_id 4URK _atom_sites.fract_transf_matrix[1][1] 0.006984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000698 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id A82 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 2092 _pdbx_nonpoly_scheme.auth_seq_num 2092 _pdbx_nonpoly_scheme.pdb_mon_id A82 _pdbx_nonpoly_scheme.auth_mon_id A82 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A82 . . . B 2 41.533 16.321 33.558 1 65.55 ? C1 A82 2092 A 1 HETATM 2 C C2 A82 . . . B 2 41.228 15.261 32.81 1 65.79 ? C2 A82 2092 A 1 HETATM 3 N N3 A82 . . . B 2 42.182 14.635 32.05 1 66.32 ? N3 A82 2092 A 1 HETATM 4 C C4 A82 . . . B 2 43.504 15.083 32.051 1 67 ? C4 A82 2092 A 1 HETATM 5 N N5 A82 . . . B 2 44.422 14.499 31.356 1 67.09 ? N5 A82 2092 A 1 HETATM 6 C C6 A82 . . . B 2 44.13 13.411 30.585 1 66.87 ? C6 A82 2092 A 1 HETATM 7 C C7 A82 . . . B 2 42.889 12.909 30.512 1 66.88 ? C7 A82 2092 A 1 HETATM 8 C C8 A82 . . . B 2 41.806 13.536 31.291 1 66.59 ? C8 A82 2092 A 1 HETATM 9 O O9 A82 . . . B 2 40.687 13.044 31.211 1 66.49 ? O9 A82 2092 A 1 HETATM 10 N N10 A82 . . . B 2 45.157 12.84 29.869 1 66.35 ? N10 A82 2092 A 1 HETATM 11 C C11 A82 . . . B 2 44.876 12.165 28.611 1 65.68 ? C11 A82 2092 A 1 HETATM 12 C C12 A82 . . . B 2 46.075 11.338 28.223 1 66.2 ? C12 A82 2092 A 1 HETATM 13 O O13 A82 . . . B 2 47.23 12.169 28.176 1 65.82 ? O13 A82 2092 A 1 HETATM 14 C C14 A82 . . . B 2 47.548 12.616 29.487 1 66.37 ? C14 A82 2092 A 1 HETATM 15 C C15 A82 . . . B 2 46.44 13.535 29.924 1 66.38 ? C15 A82 2092 A 1 HETATM 16 C C16 A82 . . . B 2 43.869 16.276 32.882 1 65.97 ? C16 A82 2092 A 1 HETATM 17 C C17 A82 . . . B 2 42.873 16.826 33.59 1 65.44 ? C17 A82 2092 A 1 HETATM 18 C C18 A82 . . . B 2 45.298 16.756 32.905 1 64.74 ? C18 A82 2092 A 1 HETATM 19 C C19 A82 . . . B 2 45.656 17.477 31.632 1 64.26 ? C19 A82 2092 A 1 HETATM 20 C C20 A82 . . . B 2 40.522 17.02 34.386 1 65.08 ? C20 A82 2092 A 1 HETATM 21 N N21 A82 . . . B 2 45.526 17.705 33.981 1 65.63 ? N21 A82 2092 A 1 HETATM 22 C C22 A82 . . . B 2 46.194 17.189 35.114 1 66.63 ? C22 A82 2092 A 1 HETATM 23 C C23 A82 . . . B 2 47.834 17.451 36.869 1 66.73 ? C23 A82 2092 A 1 HETATM 24 C C24 A82 . . . B 2 47.186 17.928 35.748 1 68.31 ? C24 A82 2092 A 1 HETATM 25 C C25 A82 . . . B 2 47.48 16.225 37.389 1 65.2 ? C25 A82 2092 A 1 HETATM 26 C C26 A82 . . . B 2 45.85 15.967 35.671 1 65.2 ? C26 A82 2092 A 1 HETATM 27 C C27 A82 . . . B 2 46.488 15.479 36.791 1 64.44 ? C27 A82 2092 A 1 HETATM 28 C C28 A82 . . . B 2 47.627 19.243 35.241 1 69.54 ? C28 A82 2092 A 1 HETATM 29 O O29 A82 . . . B 2 46.543 20.06 35.151 1 69.2 ? O29 A82 2092 A 1 HETATM 30 O O30 A82 . . . B 2 48.79 19.518 34.969 1 69.54 ? O30 A82 2092 A 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #