data_4URN
#
_model_server_result.job_id            GsFweAmvgETftBTSzyC6Lw 
_model_server_result.datetime_utc      '2025-01-04 09:20:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4urn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2000}' 
#
_entry.id    4URN 
#
_exptl.entry_id    4URN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              612.624 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NOVOBIOCIN 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.85 
_cell.angle_gamma         90 
_cell.entry_id            4URN 
_cell.length_a            115.678 
_cell.length_b            75.321 
_cell.length_c            76.144 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4URN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G 1 1 
B,E,H 2 1 
C,F,I 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C31 H36 N2 O11' 
_chem_comp.formula_weight    612.624 
_chem_comp.id                NOV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NOVOBIOCIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '4-Hydroxy-3-[4-hydroxy-3-(3-methylbut-2-enyl)benzamido]-8-methylcoumarin-7-yl 3-O-carbamoyl-5,5-di-C-methyl-alpha-l-lyxofuranoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 NOV sing 224 n n 
C1 H11A NOV sing 225 n n 
C1 H12 NOV sing 226 n n 
C1 H13 NOV sing 227 n n 
O1 C27 NOV sing 228 n n 
N1 C12 NOV sing 229 n n 
N1 HN11 NOV sing 230 n n 
N1 HN12 NOV sing 231 n n 
C12 O4 NOV doub 232 n n 
C12 O5 NOV sing 233 n n 
O5 C28 NOV sing 234 n n 
C27 C28 NOV sing 235 n n 
C27 C31 NOV sing 236 n n 
C27 H27 NOV sing 237 n n 
C28 C29 NOV sing 238 n n 
C28 H28 NOV sing 239 n n 
C29 O6 NOV sing 240 n n 
C29 C30 NOV sing 241 n n 
C29 H29 NOV sing 242 n n 
O6 HO6 NOV sing 243 n n 
C30 O7 NOV sing 244 n n 
C30 O8 NOV sing 245 n n 
C30 H30 NOV sing 246 n n 
O7 C31 NOV sing 247 n n 
C31 C23 NOV sing 248 n n 
C31 C26 NOV sing 249 n n 
C23 H231 NOV sing 250 n n 
C23 H232 NOV sing 251 n n 
C23 H233 NOV sing 252 n n 
C26 H261 NOV sing 253 n n 
C26 H262 NOV sing 254 n n 
C26 H263 NOV sing 255 n n 
O8 C3 NOV sing 256 n n 
C3 C4 NOV doub 257 n y 
C3 C11 NOV sing 258 n y 
C4 C2 NOV sing 259 n n 
C4 C5 NOV sing 260 n y 
C2 H21A NOV sing 261 n n 
C2 H22 NOV sing 262 n n 
C2 H23 NOV sing 263 n n 
C5 C9 NOV doub 264 n y 
C5 O10 NOV sing 265 n n 
C9 C10 NOV sing 266 n y 
C9 C8 NOV sing 267 n n 
C10 C11 NOV doub 268 n y 
C10 H10 NOV sing 269 n n 
C11 H11 NOV sing 270 n n 
O10 C6 NOV sing 271 n n 
C6 O11 NOV doub 272 n n 
C6 C7 NOV sing 273 n n 
C7 C8 NOV doub 274 n n 
C7 N2 NOV sing 275 n n 
C8 O9 NOV sing 276 n n 
O9 HO9 NOV sing 277 n n 
N2 C13 NOV sing 278 n n 
N2 HN2 NOV sing 279 n n 
C13 O2 NOV doub 280 n n 
C13 C14 NOV sing 281 n n 
C14 C15 NOV doub 282 n y 
C14 C19 NOV sing 283 n y 
C15 C16 NOV sing 284 n y 
C15 H15 NOV sing 285 n n 
C16 C17 NOV doub 286 n y 
C16 C20 NOV sing 287 n n 
C17 O3 NOV sing 288 n n 
C17 C18 NOV sing 289 n y 
O3 HO3 NOV sing 290 n n 
C18 C19 NOV doub 291 n y 
C18 H18 NOV sing 292 n n 
C19 H19 NOV sing 293 n n 
C20 C21 NOV sing 294 n n 
C20 H201 NOV sing 295 n n 
C20 H202 NOV sing 296 n n 
C21 C22 NOV doub 297 n n 
C21 H21 NOV sing 298 n n 
C22 C24 NOV sing 299 n n 
C22 C25 NOV sing 300 n n 
C24 H241 NOV sing 301 n n 
C24 H242 NOV sing 302 n n 
C24 H243 NOV sing 303 n n 
C25 H251 NOV sing 304 n n 
C25 H252 NOV sing 305 n n 
C25 H253 NOV sing 306 n n 
#
_atom_sites.entry_id                     4URN 
_atom_sites.fract_transf_matrix[1][1]    0.008645 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00043 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013277 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NOV A 1 2000 2000 NOV NOV . 
E 2 NOV B 1 2000 2000 NOV NOV . 
F 2 NOV C 1 2000 2000 NOV NOV . 
G 3 HOH A 1 2001 2001 HOH HOH . 
G 3 HOH A 2 2002 2002 HOH HOH . 
G 3 HOH A 3 2003 2003 HOH HOH . 
G 3 HOH A 4 2004 2004 HOH HOH . 
G 3 HOH A 5 2005 2005 HOH HOH . 
G 3 HOH A 6 2006 2006 HOH HOH . 
G 3 HOH A 7 2007 2007 HOH HOH . 
G 3 HOH A 8 2008 2008 HOH HOH . 
G 3 HOH A 9 2009 2009 HOH HOH . 
G 3 HOH A 10 2010 2010 HOH HOH . 
G 3 HOH A 11 2011 2011 HOH HOH . 
G 3 HOH A 12 2012 2012 HOH HOH . 
G 3 HOH A 13 2013 2013 HOH HOH . 
G 3 HOH A 14 2014 2014 HOH HOH . 
G 3 HOH A 15 2015 2015 HOH HOH . 
G 3 HOH A 16 2016 2016 HOH HOH . 
G 3 HOH A 17 2017 2017 HOH HOH . 
G 3 HOH A 18 2018 2018 HOH HOH . 
G 3 HOH A 19 2019 2019 HOH HOH . 
G 3 HOH A 20 2020 2020 HOH HOH . 
H 3 HOH B 1 2001 2001 HOH HOH . 
H 3 HOH B 2 2002 2002 HOH HOH . 
H 3 HOH B 3 2003 2003 HOH HOH . 
H 3 HOH B 4 2004 2004 HOH HOH . 
H 3 HOH B 5 2005 2005 HOH HOH . 
H 3 HOH B 6 2006 2006 HOH HOH . 
H 3 HOH B 7 2007 2007 HOH HOH . 
H 3 HOH B 8 2008 2008 HOH HOH . 
H 3 HOH B 9 2009 2009 HOH HOH . 
H 3 HOH B 10 2010 2010 HOH HOH . 
H 3 HOH B 11 2011 2011 HOH HOH . 
H 3 HOH B 12 2012 2012 HOH HOH . 
H 3 HOH B 13 2013 2013 HOH HOH . 
H 3 HOH B 14 2014 2014 HOH HOH . 
H 3 HOH B 15 2015 2015 HOH HOH . 
H 3 HOH B 16 2016 2016 HOH HOH . 
H 3 HOH B 17 2017 2017 HOH HOH . 
H 3 HOH B 18 2018 2018 HOH HOH . 
I 3 HOH C 1 2001 2001 HOH HOH . 
I 3 HOH C 2 2002 2002 HOH HOH . 
I 3 HOH C 3 2003 2003 HOH HOH . 
I 3 HOH C 4 2004 2004 HOH HOH . 
I 3 HOH C 5 2005 2005 HOH HOH . 
I 3 HOH C 6 2006 2006 HOH HOH . 
I 3 HOH C 7 2007 2007 HOH HOH . 
I 3 HOH C 8 2008 2008 HOH HOH . 
I 3 HOH C 9 2009 2009 HOH HOH . 
I 3 HOH C 10 2010 2010 HOH HOH . 
I 3 HOH C 11 2011 2011 HOH HOH . 
I 3 HOH C 12 2012 2012 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NOV . . . D 2 -30.315 2.217 3.221 1 43.09 ? C1 NOV 2000 A 1 
HETATM 2 O O1 NOV . . . D 2 -30.479 3.137 2.147 1 41.67 ? O1 NOV 2000 A 1 
HETATM 3 N N1 NOV . . . D 2 -26.405 1.507 0.62 1 34.9 ? N1 NOV 2000 A 1 
HETATM 4 C C12 NOV . . . D 2 -27.36 2.196 0.004 1 39.98 ? C12 NOV 2000 A 1 
HETATM 5 O O4 NOV . . . D 2 -27.176 3.047 -0.845 1 45.8 ? O4 NOV 2000 A 1 
HETATM 6 O O5 NOV . . . D 2 -28.58 1.832 0.454 1 41.43 ? O5 NOV 2000 A 1 
HETATM 7 C C27 NOV . . . D 2 -30.889 2.542 0.919 1 38.83 ? C27 NOV 2000 A 1 
HETATM 8 C C28 NOV . . . D 2 -29.736 2.511 -0.083 1 39.8 ? C28 NOV 2000 A 1 
HETATM 9 C C29 NOV . . . D 2 -30.187 1.912 -1.411 1 42.93 ? C29 NOV 2000 A 1 
HETATM 10 O O6 NOV . . . D 2 -30.612 0.564 -1.28 1 44.67 ? O6 NOV 2000 A 1 
HETATM 11 C C30 NOV . . . D 2 -31.296 2.767 -2.013 1 42.4 ? C30 NOV 2000 A 1 
HETATM 12 O O7 NOV . . . D 2 -32.36 3.038 -1.09 1 37.63 ? O7 NOV 2000 A 1 
HETATM 13 C C31 NOV . . . D 2 -32.125 3.355 0.312 1 37.47 ? C31 NOV 2000 A 1 
HETATM 14 C C23 NOV . . . D 2 -31.949 4.868 0.391 1 37.76 ? C23 NOV 2000 A 1 
HETATM 15 C C26 NOV . . . D 2 -33.391 2.936 1.038 1 31.8 ? C26 NOV 2000 A 1 
HETATM 16 O O8 NOV . . . D 2 -30.657 3.926 -2.51 1 47.96 ? O8 NOV 2000 A 1 
HETATM 17 C C3 NOV . . . D 2 -31.35 4.846 -3.264 1 46.38 ? C3 NOV 2000 A 1 
HETATM 18 C C4 NOV . . . D 2 -30.555 5.891 -3.755 1 44.46 ? C4 NOV 2000 A 1 
HETATM 19 C C2 NOV . . . D 2 -29.059 5.909 -3.528 1 41 ? C2 NOV 2000 A 1 
HETATM 20 C C5 NOV . . . D 2 -31.187 6.866 -4.526 1 45.83 ? C5 NOV 2000 A 1 
HETATM 21 C C9 NOV . . . D 2 -32.556 6.829 -4.809 1 45.59 ? C9 NOV 2000 A 1 
HETATM 22 C C10 NOV . . . D 2 -33.317 5.784 -4.28 1 45.08 ? C10 NOV 2000 A 1 
HETATM 23 C C11 NOV . . . D 2 -32.722 4.79 -3.521 1 46.1 ? C11 NOV 2000 A 1 
HETATM 24 O O10 NOV . . . D 2 -30.364 7.84 -5.06 1 48.48 ? O10 NOV 2000 A 1 
HETATM 25 C C6 NOV . . . D 2 -30.82 8.807 -5.932 1 52.22 ? C6 NOV 2000 A 1 
HETATM 26 O O11 NOV . . . D 2 -29.993 9.596 -6.325 1 51.66 ? O11 NOV 2000 A 1 
HETATM 27 C C7 NOV . . . D 2 -32.301 8.777 -6.298 1 52.5 ? C7 NOV 2000 A 1 
HETATM 28 C C8 NOV . . . D 2 -33.1 7.833 -5.71 1 48.39 ? C8 NOV 2000 A 1 
HETATM 29 O O9 NOV . . . D 2 -34.415 7.787 -5.884 1 48.8 ? O9 NOV 2000 A 1 
HETATM 30 N N2 NOV . . . D 2 -32.606 9.706 -7.32 1 57.43 ? N2 NOV 2000 A 1 
HETATM 31 C C13 NOV . . . D 2 -32.81 9.356 -8.644 1 61.2 ? C13 NOV 2000 A 1 
HETATM 32 O O2 NOV . . . D 2 -32.85 8.184 -9.021 1 60.63 ? O2 NOV 2000 A 1 
HETATM 33 C C14 NOV . . . D 2 -33.003 10.483 -9.612 1 64.31 ? C14 NOV 2000 A 1 
HETATM 34 C C15 NOV . . . D 2 -33.492 11.725 -9.208 1 66.78 ? C15 NOV 2000 A 1 
HETATM 35 C C16 NOV . . . D 2 -33.728 12.751 -10.128 1 69.44 ? C16 NOV 2000 A 1 
HETATM 36 C C17 NOV . . . D 2 -33.469 12.502 -11.482 1 70.44 ? C17 NOV 2000 A 1 
HETATM 37 O O3 NOV . . . D 2 -33.73 13.455 -12.416 1 71.41 ? O3 NOV 2000 A 1 
HETATM 38 C C18 NOV . . . D 2 -32.965 11.268 -11.888 1 68.78 ? C18 NOV 2000 A 1 
HETATM 39 C C19 NOV . . . D 2 -32.732 10.271 -10.961 1 66.11 ? C19 NOV 2000 A 1 
HETATM 40 C C20 NOV . . . D 2 -34.217 14.118 -9.678 1 71.98 ? C20 NOV 2000 A 1 
HETATM 41 C C21 NOV . . . D 2 -34.991 14.196 -8.39 1 73.99 ? C21 NOV 2000 A 1 
HETATM 42 C C22 NOV . . . D 2 -36.162 14.782 -8.172 1 74.39 ? C22 NOV 2000 A 1 
HETATM 43 C C24 NOV . . . D 2 -36.802 14.778 -6.818 1 74.76 ? C24 NOV 2000 A 1 
HETATM 44 C C25 NOV . . . D 2 -36.963 15.478 -9.236 1 74.18 ? C25 NOV 2000 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           445 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#