data_4URN # _model_server_result.job_id tkkBpG9wm2470_txZVoUhQ _model_server_result.datetime_utc '2025-01-04 09:16:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4urn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2000}' # _entry.id 4URN # _exptl.entry_id 4URN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 612.624 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NOVOBIOCIN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.85 _cell.angle_gamma 90 _cell.entry_id 4URN _cell.length_a 115.678 _cell.length_b 75.321 _cell.length_c 76.144 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4URN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C31 H36 N2 O11' _chem_comp.formula_weight 612.624 _chem_comp.id NOV _chem_comp.mon_nstd_flag . _chem_comp.name NOVOBIOCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-Hydroxy-3-[4-hydroxy-3-(3-methylbut-2-enyl)benzamido]-8-methylcoumarin-7-yl 3-O-carbamoyl-5,5-di-C-methyl-alpha-l-lyxofuranoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 NOV sing 224 n n C1 H11A NOV sing 225 n n C1 H12 NOV sing 226 n n C1 H13 NOV sing 227 n n O1 C27 NOV sing 228 n n N1 C12 NOV sing 229 n n N1 HN11 NOV sing 230 n n N1 HN12 NOV sing 231 n n C12 O4 NOV doub 232 n n C12 O5 NOV sing 233 n n O5 C28 NOV sing 234 n n C27 C28 NOV sing 235 n n C27 C31 NOV sing 236 n n C27 H27 NOV sing 237 n n C28 C29 NOV sing 238 n n C28 H28 NOV sing 239 n n C29 O6 NOV sing 240 n n C29 C30 NOV sing 241 n n C29 H29 NOV sing 242 n n O6 HO6 NOV sing 243 n n C30 O7 NOV sing 244 n n C30 O8 NOV sing 245 n n C30 H30 NOV sing 246 n n O7 C31 NOV sing 247 n n C31 C23 NOV sing 248 n n C31 C26 NOV sing 249 n n C23 H231 NOV sing 250 n n C23 H232 NOV sing 251 n n C23 H233 NOV sing 252 n n C26 H261 NOV sing 253 n n C26 H262 NOV sing 254 n n C26 H263 NOV sing 255 n n O8 C3 NOV sing 256 n n C3 C4 NOV doub 257 n y C3 C11 NOV sing 258 n y C4 C2 NOV sing 259 n n C4 C5 NOV sing 260 n y C2 H21A NOV sing 261 n n C2 H22 NOV sing 262 n n C2 H23 NOV sing 263 n n C5 C9 NOV doub 264 n y C5 O10 NOV sing 265 n n C9 C10 NOV sing 266 n y C9 C8 NOV sing 267 n n C10 C11 NOV doub 268 n y C10 H10 NOV sing 269 n n C11 H11 NOV sing 270 n n O10 C6 NOV sing 271 n n C6 O11 NOV doub 272 n n C6 C7 NOV sing 273 n n C7 C8 NOV doub 274 n n C7 N2 NOV sing 275 n n C8 O9 NOV sing 276 n n O9 HO9 NOV sing 277 n n N2 C13 NOV sing 278 n n N2 HN2 NOV sing 279 n n C13 O2 NOV doub 280 n n C13 C14 NOV sing 281 n n C14 C15 NOV doub 282 n y C14 C19 NOV sing 283 n y C15 C16 NOV sing 284 n y C15 H15 NOV sing 285 n n C16 C17 NOV doub 286 n y C16 C20 NOV sing 287 n n C17 O3 NOV sing 288 n n C17 C18 NOV sing 289 n y O3 HO3 NOV sing 290 n n C18 C19 NOV doub 291 n y C18 H18 NOV sing 292 n n C19 H19 NOV sing 293 n n C20 C21 NOV sing 294 n n C20 H201 NOV sing 295 n n C20 H202 NOV sing 296 n n C21 C22 NOV doub 297 n n C21 H21 NOV sing 298 n n C22 C24 NOV sing 299 n n C22 C25 NOV sing 300 n n C24 H241 NOV sing 301 n n C24 H242 NOV sing 302 n n C24 H243 NOV sing 303 n n C25 H251 NOV sing 304 n n C25 H252 NOV sing 305 n n C25 H253 NOV sing 306 n n # _atom_sites.entry_id 4URN _atom_sites.fract_transf_matrix[1][1] 0.008645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00043 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NOV A 1 2000 2000 NOV NOV . E 2 NOV B 1 2000 2000 NOV NOV . F 2 NOV C 1 2000 2000 NOV NOV . G 3 HOH A 1 2001 2001 HOH HOH . G 3 HOH A 2 2002 2002 HOH HOH . G 3 HOH A 3 2003 2003 HOH HOH . G 3 HOH A 4 2004 2004 HOH HOH . G 3 HOH A 5 2005 2005 HOH HOH . G 3 HOH A 6 2006 2006 HOH HOH . G 3 HOH A 7 2007 2007 HOH HOH . G 3 HOH A 8 2008 2008 HOH HOH . G 3 HOH A 9 2009 2009 HOH HOH . G 3 HOH A 10 2010 2010 HOH HOH . G 3 HOH A 11 2011 2011 HOH HOH . G 3 HOH A 12 2012 2012 HOH HOH . G 3 HOH A 13 2013 2013 HOH HOH . G 3 HOH A 14 2014 2014 HOH HOH . G 3 HOH A 15 2015 2015 HOH HOH . G 3 HOH A 16 2016 2016 HOH HOH . G 3 HOH A 17 2017 2017 HOH HOH . G 3 HOH A 18 2018 2018 HOH HOH . G 3 HOH A 19 2019 2019 HOH HOH . G 3 HOH A 20 2020 2020 HOH HOH . H 3 HOH B 1 2001 2001 HOH HOH . H 3 HOH B 2 2002 2002 HOH HOH . H 3 HOH B 3 2003 2003 HOH HOH . H 3 HOH B 4 2004 2004 HOH HOH . H 3 HOH B 5 2005 2005 HOH HOH . H 3 HOH B 6 2006 2006 HOH HOH . H 3 HOH B 7 2007 2007 HOH HOH . H 3 HOH B 8 2008 2008 HOH HOH . H 3 HOH B 9 2009 2009 HOH HOH . H 3 HOH B 10 2010 2010 HOH HOH . H 3 HOH B 11 2011 2011 HOH HOH . H 3 HOH B 12 2012 2012 HOH HOH . H 3 HOH B 13 2013 2013 HOH HOH . H 3 HOH B 14 2014 2014 HOH HOH . H 3 HOH B 15 2015 2015 HOH HOH . H 3 HOH B 16 2016 2016 HOH HOH . H 3 HOH B 17 2017 2017 HOH HOH . H 3 HOH B 18 2018 2018 HOH HOH . I 3 HOH C 1 2001 2001 HOH HOH . I 3 HOH C 2 2002 2002 HOH HOH . I 3 HOH C 3 2003 2003 HOH HOH . I 3 HOH C 4 2004 2004 HOH HOH . I 3 HOH C 5 2005 2005 HOH HOH . I 3 HOH C 6 2006 2006 HOH HOH . I 3 HOH C 7 2007 2007 HOH HOH . I 3 HOH C 8 2008 2008 HOH HOH . I 3 HOH C 9 2009 2009 HOH HOH . I 3 HOH C 10 2010 2010 HOH HOH . I 3 HOH C 11 2011 2011 HOH HOH . I 3 HOH C 12 2012 2012 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NOV . . . E 2 -48.176 -6.965 -22.171 1 47.05 ? C1 NOV 2000 B 1 HETATM 2 O O1 NOV . . . E 2 -48.853 -7.451 -23.324 1 47.27 ? O1 NOV 2000 B 1 HETATM 3 N N1 NOV . . . E 2 -50.619 -3.352 -24.251 1 33.14 ? N1 NOV 2000 B 1 HETATM 4 C C12 NOV . . . E 2 -50.433 -4.368 -25.087 1 37.63 ? C12 NOV 2000 B 1 HETATM 5 O O4 NOV . . . E 2 -51.165 -4.644 -26.011 1 38.98 ? O4 NOV 2000 B 1 HETATM 6 O O5 NOV . . . E 2 -49.271 -5.036 -24.791 1 40.95 ? O5 NOV 2000 B 1 HETATM 7 C C27 NOV . . . E 2 -48.181 -7.209 -24.558 1 39.98 ? C27 NOV 2000 B 1 HETATM 8 C C28 NOV . . . E 2 -49.007 -6.292 -25.453 1 38.67 ? C28 NOV 2000 B 1 HETATM 9 C C29 NOV . . . E 2 -48.381 -6.133 -26.839 1 41.05 ? C29 NOV 2000 B 1 HETATM 10 O O6 NOV . . . E 2 -47.107 -5.494 -26.882 1 38.24 ? O6 NOV 2000 B 1 HETATM 11 C C30 NOV . . . E 2 -48.293 -7.496 -27.511 1 41.77 ? C30 NOV 2000 B 1 HETATM 12 O O7 NOV . . . E 2 -47.659 -8.473 -26.68 1 42.66 ? O7 NOV 2000 B 1 HETATM 13 C C31 NOV . . . E 2 -47.967 -8.625 -25.266 1 38.17 ? C31 NOV 2000 B 1 HETATM 14 C C23 NOV . . . E 2 -49.143 -9.587 -25.155 1 31.06 ? C23 NOV 2000 B 1 HETATM 15 C C26 NOV . . . E 2 -46.711 -9.278 -24.721 1 35.32 ? C26 NOV 2000 B 1 HETATM 16 O O8 NOV . . . E 2 -49.605 -7.827 -27.916 1 44.21 ? O8 NOV 2000 B 1 HETATM 17 C C3 NOV . . . E 2 -49.848 -8.969 -28.656 1 44.96 ? C3 NOV 2000 B 1 HETATM 18 C C4 NOV . . . E 2 -51.182 -9.106 -29.063 1 42.64 ? C4 NOV 2000 B 1 HETATM 19 C C2 NOV . . . E 2 -52.228 -8.09 -28.665 1 39.92 ? C2 NOV 2000 B 1 HETATM 20 C C5 NOV . . . E 2 -51.499 -10.212 -29.85 1 46.46 ? C5 NOV 2000 B 1 HETATM 21 C C9 NOV . . . E 2 -50.56 -11.187 -30.203 1 49.02 ? C9 NOV 2000 B 1 HETATM 22 C C10 NOV . . . E 2 -49.244 -11.033 -29.752 1 46.44 ? C10 NOV 2000 B 1 HETATM 23 C C11 NOV . . . E 2 -48.885 -9.931 -28.99 1 45.55 ? C11 NOV 2000 B 1 HETATM 24 O O10 NOV . . . E 2 -52.795 -10.255 -30.324 1 47.61 ? O10 NOV 2000 B 1 HETATM 25 C C6 NOV . . . E 2 -53.253 -11.247 -31.161 1 49.85 ? C6 NOV 2000 B 1 HETATM 26 O O11 NOV . . . E 2 -54.397 -11.135 -31.524 1 48.56 ? O11 NOV 2000 B 1 HETATM 27 C C7 NOV . . . E 2 -52.278 -12.338 -31.539 1 54.44 ? C7 NOV 2000 B 1 HETATM 28 C C8 NOV . . . E 2 -50.995 -12.277 -31.069 1 49.92 ? C8 NOV 2000 B 1 HETATM 29 O O9 NOV . . . E 2 -50.078 -13.197 -31.357 1 47.67 ? O9 NOV 2000 B 1 HETATM 30 N N2 NOV . . . E 2 -52.889 -13.338 -32.321 1 61.85 ? N2 NOV 2000 B 1 HETATM 31 C C13 NOV . . . E 2 -52.74 -13.467 -33.683 1 69.44 ? C13 NOV 2000 B 1 HETATM 32 O O2 NOV . . . E 2 -52.126 -12.641 -34.358 1 68.39 ? O2 NOV 2000 B 1 HETATM 33 C C14 NOV . . . E 2 -53.359 -14.682 -34.303 1 77.49 ? C14 NOV 2000 B 1 HETATM 34 C C15 NOV . . . E 2 -53.714 -15.77 -33.504 1 81.49 ? C15 NOV 2000 B 1 HETATM 35 C C16 NOV . . . E 2 -54.279 -16.927 -34.05 1 84.37 ? C16 NOV 2000 B 1 HETATM 36 C C17 NOV . . . E 2 -54.477 -16.979 -35.437 1 84.86 ? C17 NOV 2000 B 1 HETATM 37 O O3 NOV . . . E 2 -55.022 -18.086 -36.014 1 85.29 ? O3 NOV 2000 B 1 HETATM 38 C C18 NOV . . . E 2 -54.122 -15.896 -36.241 1 82.92 ? C18 NOV 2000 B 1 HETATM 39 C C19 NOV . . . E 2 -53.573 -14.758 -35.677 1 80.15 ? C19 NOV 2000 B 1 HETATM 40 C C20 NOV . . . E 2 -54.667 -18.091 -33.151 1 86.15 ? C20 NOV 2000 B 1 HETATM 41 C C21 NOV . . . E 2 -54.861 -17.756 -31.696 1 88.41 ? C21 NOV 2000 B 1 HETATM 42 C C22 NOV . . . E 2 -55.997 -17.72 -31.003 1 89.08 ? C22 NOV 2000 B 1 HETATM 43 C C24 NOV . . . E 2 -57.345 -18.022 -31.59 1 89.06 ? C24 NOV 2000 B 1 HETATM 44 C C25 NOV . . . E 2 -56.021 -17.354 -29.55 1 88.25 ? C25 NOV 2000 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #