data_4US3
#
_model_server_result.job_id            kCdvEWh4tfGJqwCLotXLDQ 
_model_server_result.datetime_utc      '2024-11-22 18:45:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4us3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1450}' 
#
_entry.id    4US3 
#
_exptl.entry_id    4US3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.395 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.76 
_cell.angle_gamma         90 
_cell.entry_id            4US3 
_cell.length_a            44.28 
_cell.length_b            49.89 
_cell.length_c            110.05 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4US3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 26 A GLY 24 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc2 A O ALA 28 A ALA 26 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc3 A O VAL 29 A VAL 27 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc4 A OD1 ASN 33 A ASN 31 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc5 A O THR 233 A THR 231 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc6 A OG1 THR 233 A THR 231 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc7 A OD1 ASP 265 A ASP 263 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc8 A O ALA 322 A ALA 320 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc9 A OG SER 325 A SER 323 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc10 A OG SER 326 A SER 324 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc11 B OXT TRP . A TRP 601 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc12 C NA NA . A NA 701 1_555 O O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
#
_chem_comp.formula           'C15 H30 O6' 
_chem_comp.formula_weight    306.395 
_chem_comp.id                BNG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'nonyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BNG sing 70 n n 
C1 O1 BNG sing 71 n n 
C1 O5 BNG sing 72 n n 
C1 H1 BNG sing 73 n n 
C2 C3 BNG sing 74 n n 
C2 O2 BNG sing 75 n n 
C2 H2 BNG sing 76 n n 
C3 C4 BNG sing 77 n n 
C3 O3 BNG sing 78 n n 
C3 H3 BNG sing 79 n n 
C4 C5 BNG sing 80 n n 
C4 O4 BNG sing 81 n n 
C4 H4 BNG sing 82 n n 
C5 C6 BNG sing 83 n n 
C5 O5 BNG sing 84 n n 
C5 H5 BNG sing 85 n n 
C6 O6 BNG sing 86 n n 
C6 H61 BNG sing 87 n n 
C6 H62 BNG sing 88 n n 
C1' C2' BNG sing 89 n n 
C1' O1 BNG sing 90 n n 
C1' "H1'1" BNG sing 91 n n 
C1' "H1'2" BNG sing 92 n n 
C2' C3' BNG sing 93 n n 
C2' "H2'1" BNG sing 94 n n 
C2' "H2'2" BNG sing 95 n n 
C3' C4' BNG sing 96 n n 
C3' "H3'1" BNG sing 97 n n 
C3' "H3'2" BNG sing 98 n n 
C4' C5' BNG sing 99 n n 
C4' "H4'1" BNG sing 100 n n 
C4' "H4'2" BNG sing 101 n n 
C5' C6' BNG sing 102 n n 
C5' "H5'1" BNG sing 103 n n 
C5' "H5'2" BNG sing 104 n n 
C6' C7' BNG sing 105 n n 
C6' "H6'1" BNG sing 106 n n 
C6' "H6'2" BNG sing 107 n n 
C7' C8' BNG sing 108 n n 
C7' "H7'1" BNG sing 109 n n 
C7' "H7'2" BNG sing 110 n n 
C8' C9' BNG sing 111 n n 
C8' "H8'1" BNG sing 112 n n 
C8' "H8'2" BNG sing 113 n n 
C9' "H9'1" BNG sing 114 n n 
C9' "H9'2" BNG sing 115 n n 
C9' "H9'3" BNG sing 116 n n 
O2 HO2 BNG sing 117 n n 
O3 HO3 BNG sing 118 n n 
O4 HO4 BNG sing 119 n n 
O6 HO6 BNG sing 120 n n 
#
_pdbx_chem_comp_identifier.comp_id            BNG 
_pdbx_chem_comp_identifier.identifier         b-nonylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     4US3 
_atom_sites.fract_transf_matrix[1][1]    0.022584 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002677 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00915 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TRP A 1 601 601 TRP TRP . 
C 3 NA A 1 701 701 NA NA . 
D 3 NA A 1 702 702 NA NA . 
E 4 BNG A 1 1449 1449 BNG BNG . 
F 4 BNG A 1 1450 1450 BNG BNG . 
G 4 BNG A 1 1451 1451 BNG BNG . 
H 5 LMU A 1 1452 1452 LMU LMU . 
I 5 LMU A 1 1453 1453 LMU LMU . 
J 5 LMU A 1 1454 1454 LMU LMU . 
K 5 LMU A 1 1455 1455 LMU LMU . 
L 5 LMU A 1 1456 1456 LMU LMU . 
M 5 LMU A 1 1457 1457 LMU LMU . 
N 4 BNG A 1 1458 1458 BNG BNG . 
O 6 HOH A 1 2001 2001 HOH HOH . 
O 6 HOH A 2 2002 2002 HOH HOH . 
O 6 HOH A 3 2003 2003 HOH HOH . 
O 6 HOH A 4 2004 2004 HOH HOH . 
O 6 HOH A 5 2005 2005 HOH HOH . 
O 6 HOH A 6 2006 2006 HOH HOH . 
O 6 HOH A 7 2007 2007 HOH HOH . 
O 6 HOH A 8 2008 2008 HOH HOH . 
O 6 HOH A 9 2009 2009 HOH HOH . 
O 6 HOH A 10 2010 2010 HOH HOH . 
O 6 HOH A 11 2011 2011 HOH HOH . 
O 6 HOH A 12 2012 2012 HOH HOH . 
O 6 HOH A 13 2013 2013 HOH HOH . 
O 6 HOH A 14 2014 2014 HOH HOH . 
O 6 HOH A 15 2015 2015 HOH HOH . 
O 6 HOH A 16 2016 2016 HOH HOH . 
O 6 HOH A 17 2017 2017 HOH HOH . 
O 6 HOH A 18 2018 2018 HOH HOH . 
O 6 HOH A 19 2019 2019 HOH HOH . 
O 6 HOH A 20 2020 2020 HOH HOH . 
O 6 HOH A 21 2021 2021 HOH HOH . 
O 6 HOH A 22 2022 2022 HOH HOH . 
O 6 HOH A 23 2023 2023 HOH HOH . 
O 6 HOH A 24 2024 2024 HOH HOH . 
O 6 HOH A 25 2025 2025 HOH HOH . 
O 6 HOH A 26 2026 2026 HOH HOH . 
O 6 HOH A 27 2027 2027 HOH HOH . 
O 6 HOH A 28 2028 2028 HOH HOH . 
O 6 HOH A 29 2029 2029 HOH HOH . 
O 6 HOH A 30 2030 2030 HOH HOH . 
O 6 HOH A 31 2031 2031 HOH HOH . 
O 6 HOH A 32 2032 2032 HOH HOH . 
O 6 HOH A 33 2033 2033 HOH HOH . 
O 6 HOH A 34 2034 2034 HOH HOH . 
O 6 HOH A 35 2035 2035 HOH HOH . 
O 6 HOH A 36 2036 2036 HOH HOH . 
O 6 HOH A 37 2037 2037 HOH HOH . 
O 6 HOH A 38 2038 2038 HOH HOH . 
O 6 HOH A 39 2039 2039 HOH HOH . 
O 6 HOH A 40 2040 2040 HOH HOH . 
O 6 HOH A 41 2041 2041 HOH HOH . 
O 6 HOH A 42 2042 2042 HOH HOH . 
O 6 HOH A 43 2043 2043 HOH HOH . 
O 6 HOH A 44 2044 2044 HOH HOH . 
O 6 HOH A 45 2045 2045 HOH HOH . 
O 6 HOH A 46 2046 2046 HOH HOH . 
O 6 HOH A 47 2047 2047 HOH HOH . 
O 6 HOH A 48 2048 2048 HOH HOH . 
O 6 HOH A 49 2049 2049 HOH HOH . 
O 6 HOH A 50 2050 2050 HOH HOH . 
O 6 HOH A 51 2051 2051 HOH HOH . 
O 6 HOH A 52 2052 2052 HOH HOH . 
O 6 HOH A 53 2053 2053 HOH HOH . 
O 6 HOH A 54 2054 2054 HOH HOH . 
O 6 HOH A 55 2055 2055 HOH HOH . 
O 6 HOH A 56 2056 2056 HOH HOH . 
O 6 HOH A 57 2057 2057 HOH HOH . 
O 6 HOH A 58 2058 2058 HOH HOH . 
O 6 HOH A 59 2059 2059 HOH HOH . 
O 6 HOH A 60 2060 2060 HOH HOH . 
O 6 HOH A 61 2061 2061 HOH HOH . 
O 6 HOH A 62 2062 2062 HOH HOH . 
O 6 HOH A 63 2063 2063 HOH HOH . 
O 6 HOH A 64 2064 2064 HOH HOH . 
O 6 HOH A 65 2065 2065 HOH HOH . 
O 6 HOH A 66 2066 2066 HOH HOH . 
O 6 HOH A 67 2067 2067 HOH HOH . 
O 6 HOH A 68 2068 2068 HOH HOH . 
O 6 HOH A 69 2069 2069 HOH HOH . 
O 6 HOH A 70 2070 2070 HOH HOH . 
O 6 HOH A 71 2071 2071 HOH HOH . 
O 6 HOH A 72 2072 2072 HOH HOH . 
O 6 HOH A 73 2073 2073 HOH HOH . 
O 6 HOH A 74 2074 2074 HOH HOH . 
O 6 HOH A 75 2075 2075 HOH HOH . 
O 6 HOH A 76 2076 2076 HOH HOH . 
O 6 HOH A 77 2077 2077 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BNG . . . F 4 61.705 42.192 145.792 1 42.76 ? C1 BNG 1450 A 1 
HETATM 2 C C2 BNG . . . F 4 60.898 42.386 147.051 1 47.15 ? C2 BNG 1450 A 1 
HETATM 3 C C3 BNG . . . F 4 61.737 42.857 148.162 1 50.75 ? C3 BNG 1450 A 1 
HETATM 4 C C4 BNG . . . F 4 62.408 44.119 147.849 1 42.98 ? C4 BNG 1450 A 1 
HETATM 5 C C5 BNG . . . F 4 62.839 44.231 146.403 1 47.82 ? C5 BNG 1450 A 1 
HETATM 6 C C6 BNG . . . F 4 64.062 45.023 146.26 1 42.7 ? C6 BNG 1450 A 1 
HETATM 7 C C1' BNG . . . F 4 60.873 40.023 145.205 1 36.93 ? C1' BNG 1450 A 1 
HETATM 8 C C2' BNG . . . F 4 61.211 38.99 144.127 1 38.46 ? C2' BNG 1450 A 1 
HETATM 9 C C3' BNG . . . F 4 61.314 37.535 144.601 1 39.93 ? C3' BNG 1450 A 1 
HETATM 10 C C4' BNG . . . F 4 60.461 36.521 143.851 1 36.09 ? C4' BNG 1450 A 1 
HETATM 11 C C5' BNG . . . F 4 60.86 36.217 142.409 1 33.6 ? C5' BNG 1450 A 1 
HETATM 12 C C6' BNG . . . F 4 60.002 35.191 141.668 1 39.74 ? C6' BNG 1450 A 1 
HETATM 13 C C7' BNG . . . F 4 60.385 34.804 140.255 1 40.56 ? C7' BNG 1450 A 1 
HETATM 14 C C8' BNG . . . F 4 60.291 33.317 139.891 1 38.72 ? C8' BNG 1450 A 1 
HETATM 15 C C9' BNG . . . F 4 60.34 32.943 138.428 1 45.13 ? C9' BNG 1450 A 1 
HETATM 16 O O1 BNG . . . F 4 61.928 40.84 145.631 1 41.28 ? O1 BNG 1450 A 1 
HETATM 17 O O2 BNG . . . F 4 59.803 43.288 146.839 1 43.62 ? O2 BNG 1450 A 1 
HETATM 18 O O3 BNG . . . F 4 62.718 41.857 148.566 1 67.54 ? O3 BNG 1450 A 1 
HETATM 19 O O4 BNG . . . F 4 61.488 45.152 148.129 1 44.24 ? O4 BNG 1450 A 1 
HETATM 20 O O5 BNG . . . F 4 62.987 42.913 145.803 1 37.65 ? O5 BNG 1450 A 1 
HETATM 21 O O6 BNG . . . F 4 64.453 45.811 147.342 1 48.56 ? O6 BNG 1450 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#