data_4USD
#
_model_server_result.job_id            7Bbom61Ma9TvtfSr-2W5BQ 
_model_server_result.datetime_utc      '2024-12-03 11:44:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4usd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    4USD 
#
_exptl.entry_id    4USD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              483.581 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-{5-(6-methoxynaphthalen-2-yl)-1-methyl-2-[2-methyl-4-(methylsulfonyl)phenyl]-1H-imidazol-4-yl}pyridine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4USD 
_cell.length_a            46.72 
_cell.length_b            99.6 
_cell.length_c            151.77 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4USD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C28 H25 N3 O3 S' 
_chem_comp.formula_weight    483.581 
_chem_comp.id                R09 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-{5-(6-methoxynaphthalen-2-yl)-1-methyl-2-[2-methyl-4-(methylsulfonyl)phenyl]-1H-imidazol-4-yl}pyridine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAB CAW R09 sing 275 n n 
CAW CAQ R09 sing 276 n y 
CAW CBB R09 doub 277 n y 
CAQ CBA R09 doub 278 n y 
CBA SBI R09 sing 279 n n 
CBA CAL R09 sing 280 n y 
SBI OAE R09 doub 281 n n 
SBI OAF R09 doub 282 n n 
SBI CAD R09 sing 283 n n 
CAL CAN R09 doub 284 n y 
CAN CBB R09 sing 285 n y 
CBB CBD R09 sing 286 n n 
CBD NBH R09 sing 287 n y 
CBD NAU R09 doub 288 n y 
NBH CAC R09 sing 289 n n 
NBH CBE R09 sing 290 n y 
NAU CBC R09 sing 291 n y 
CBC CAY R09 sing 292 n n 
CBC CBE R09 doub 293 n y 
CAY CAI R09 doub 294 n y 
CAY CAJ R09 sing 295 n y 
CAI CAG R09 sing 296 n y 
CAG NAT R09 doub 297 n y 
NAT CAH R09 sing 298 n y 
CAH CAJ R09 doub 299 n y 
CBE CAZ R09 sing 300 n n 
CAZ CAS R09 sing 301 n y 
CAZ CAM R09 doub 302 n y 
CAS CBG R09 doub 303 n y 
CBG CAO R09 sing 304 n y 
CBG CBF R09 sing 305 n y 
CAO CAK R09 doub 306 n y 
CAK CAX R09 sing 307 n y 
CAX OAV R09 sing 308 n n 
CAX CAR R09 doub 309 n y 
OAV CAA R09 sing 310 n n 
CAR CBF R09 sing 311 n y 
CBF CAP R09 doub 312 n y 
CAP CAM R09 sing 313 n y 
CAB HAB1 R09 sing 314 n n 
CAB HAB2 R09 sing 315 n n 
CAB HAB3 R09 sing 316 n n 
CAQ HAQ R09 sing 317 n n 
CAL HAL R09 sing 318 n n 
CAD HAD1 R09 sing 319 n n 
CAD HAD2 R09 sing 320 n n 
CAD HAD3 R09 sing 321 n n 
CAN HAN R09 sing 322 n n 
CAC HAC1 R09 sing 323 n n 
CAC HAC2 R09 sing 324 n n 
CAC HAC3 R09 sing 325 n n 
CAI HAI R09 sing 326 n n 
CAJ HAJ R09 sing 327 n n 
CAG HAG R09 sing 328 n n 
CAH HAH R09 sing 329 n n 
CAS HAS R09 sing 330 n n 
CAM HAM R09 sing 331 n n 
CAO HAO R09 sing 332 n n 
CAK HAK R09 sing 333 n n 
CAR HAR R09 sing 334 n n 
CAA HAA1 R09 sing 335 n n 
CAA HAA2 R09 sing 336 n n 
CAA HAA3 R09 sing 337 n n 
CAP HAP R09 sing 338 n n 
#
_atom_sites.entry_id                     4USD 
_atom_sites.fract_transf_matrix[1][1]    0.021404 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01004 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006589 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 R09 A 1 500 500 R09 R09 . 
D 2 R09 B 1 500 500 R09 R09 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAB R09 . . . C 2 33.776 -1.728 -14.124 1 71.17 ? CAB R09 500 A 1 
HETATM 2 C CAW R09 . . . C 2 33.394 -2.951 -14.691 1 69.65 ? CAW R09 500 A 1 
HETATM 3 C CAQ R09 . . . C 2 34.336 -3.733 -15.333 1 70.81 ? CAQ R09 500 A 1 
HETATM 4 C CBA R09 . . . C 2 33.952 -4.953 -15.885 1 74.61 ? CBA R09 500 A 1 
HETATM 5 S SBI R09 . . . C 2 35.135 -5.882 -16.676 1 76.97 ? SBI R09 500 A 1 
HETATM 6 O OAE R09 . . . C 2 34.539 -7.283 -16.907 1 68.52 ? OAE R09 500 A 1 
HETATM 7 O OAF R09 . . . C 2 35.493 -5.141 -17.975 1 82.17 ? OAF R09 500 A 1 
HETATM 8 C CAD R09 . . . C 2 36.633 -5.949 -15.718 1 84.05 ? CAD R09 500 A 1 
HETATM 9 C CAL R09 . . . C 2 32.632 -5.412 -15.824 1 71.76 ? CAL R09 500 A 1 
HETATM 10 C CAN R09 . . . C 2 31.689 -4.633 -15.189 1 68.88 ? CAN R09 500 A 1 
HETATM 11 C CBB R09 . . . C 2 32.086 -3.422 -14.639 1 68.08 ? CBB R09 500 A 1 
HETATM 12 C CBD R09 . . . C 2 31.19 -2.729 -14.01 1 67.66 ? CBD R09 500 A 1 
HETATM 13 N NBH R09 . . . C 2 30.073 -2.272 -14.526 1 71.69 ? NBH R09 500 A 1 
HETATM 14 C CAC R09 . . . C 2 29.608 -2.407 -15.962 1 73.27 ? CAC R09 500 A 1 
HETATM 15 N NAU R09 . . . C 2 31.322 -2.458 -12.73 1 62.34 ? NAU R09 500 A 1 
HETATM 16 C CBC R09 . . . C 2 30.252 -1.764 -12.406 1 65.23 ? CBC R09 500 A 1 
HETATM 17 C CAY R09 . . . C 2 30.076 -1.337 -11.147 1 69 ? CAY R09 500 A 1 
HETATM 18 C CAI R09 . . . C 2 28.854 -0.872 -10.64 1 67.47 ? CAI R09 500 A 1 
HETATM 19 C CAG R09 . . . C 2 28.734 -0.457 -9.312 1 67.05 ? CAG R09 500 A 1 
HETATM 20 N NAT R09 . . . C 2 29.834 -0.526 -8.455 1 68.76 ? NAT R09 500 A 1 
HETATM 21 C CAH R09 . . . C 2 31.063 -1.001 -8.946 1 69.79 ? CAH R09 500 A 1 
HETATM 22 C CAJ R09 . . . C 2 31.175 -1.407 -10.272 1 72.79 ? CAJ R09 500 A 1 
HETATM 23 C CBE R09 . . . C 2 29.486 -1.661 -13.505 1 67.38 ? CBE R09 500 A 1 
HETATM 24 C CAZ R09 . . . C 2 28.327 -1.034 -13.675 1 62.77 ? CAZ R09 500 A 1 
HETATM 25 C CAS R09 . . . C 2 28.306 0.357 -13.579 1 56.26 ? CAS R09 500 A 1 
HETATM 26 C CBG R09 . . . C 2 27.126 1.052 -13.769 1 52.11 ? CBG R09 500 A 1 
HETATM 27 C CAO R09 . . . C 2 27.092 2.439 -13.641 1 50.36 ? CAO R09 500 A 1 
HETATM 28 C CAK R09 . . . C 2 25.903 3.119 -13.843 1 49.07 ? CAK R09 500 A 1 
HETATM 29 C CAX R09 . . . C 2 24.752 2.395 -14.168 1 48.87 ? CAX R09 500 A 1 
HETATM 30 O OAV R09 . . . C 2 23.569 3.048 -14.337 1 47.56 ? OAV R09 500 A 1 
HETATM 31 C CAA R09 . . . C 2 22.564 2.611 -15.254 1 47.26 ? CAA R09 500 A 1 
HETATM 32 C CAR R09 . . . C 2 24.793 1.015 -14.265 1 50.57 ? CAR R09 500 A 1 
HETATM 33 C CBF R09 . . . C 2 25.978 0.34 -14.086 1 52.07 ? CBF R09 500 A 1 
HETATM 34 C CAP R09 . . . C 2 25.981 -1.049 -14.202 1 56.25 ? CAP R09 500 A 1 
HETATM 35 C CAM R09 . . . C 2 27.168 -1.749 -14 1 61.33 ? CAM R09 500 A 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           35 
#