data_4USJ
#
_model_server_result.job_id            L7GXhHEF4SrRBcniIjfx9A 
_model_server_result.datetime_utc      '2024-12-21 13:04:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4usj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    4USJ 
#
_exptl.entry_id    4USJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.209 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ARGININE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4USJ 
_cell.length_a            171.43 
_cell.length_b            171.43 
_cell.length_c            171.43 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4USJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O2B ADP . A ADP 302 1_555 H MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc2 F O1A ADP . A ADP 302 1_555 H MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc3 H MG MG . A MG 304 1_555 Q O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc4 H MG MG . A MG 304 1_555 Q O HOH . A HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
metalc ? metalc5 H MG MG . A MG 304 1_555 Q O HOH . A HOH 2031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc6 C O GLY 54 C GLY 54 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc7 K O1G ATP . C ATP 301 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc8 K O2B ATP . C ATP 301 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc9 K O2A ATP . C ATP 301 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
metalc ? metalc10 L MG MG . C MG 302 1_555 S O HOH . C HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc11 L MG MG . C MG 302 1_555 S O HOH . C HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc12 D O GLY 54 D GLY 54 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc13 N O2A ATP . D ATP 301 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc14 N O2B ATP . D ATP 301 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc15 N O1G ATP . D ATP 301 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc16 O MG MG . D MG 302 1_555 T O HOH . D HOH 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc17 O MG MG . D MG 302 1_555 T O HOH . D HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
#
_chem_comp.formula           'C6 H15 N4 O2 1' 
_chem_comp.formula_weight    175.209 
_chem_comp.id                ARG 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              ARGININE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ARG sing 57 n n 
N H ARG sing 58 n n 
N H2 ARG sing 59 n n 
CA C ARG sing 60 n n 
CA CB ARG sing 61 n n 
CA HA ARG sing 62 n n 
C O ARG doub 63 n n 
C OXT ARG sing 64 n n 
CB CG ARG sing 65 n n 
CB HB2 ARG sing 66 n n 
CB HB3 ARG sing 67 n n 
CG CD ARG sing 68 n n 
CG HG2 ARG sing 69 n n 
CG HG3 ARG sing 70 n n 
CD NE ARG sing 71 n n 
CD HD2 ARG sing 72 n n 
CD HD3 ARG sing 73 n n 
NE CZ ARG sing 74 n n 
NE HE ARG sing 75 n n 
CZ NH1 ARG sing 76 n n 
CZ NH2 ARG doub 77 n n 
NH1 HH11 ARG sing 78 n n 
NH1 HH12 ARG sing 79 n n 
NH2 HH21 ARG sing 80 n n 
NH2 HH22 ARG sing 81 n n 
OXT HXT ARG sing 82 n n 
#
_atom_sites.entry_id                     4USJ 
_atom_sites.fract_transf_matrix[1][1]    0.005833 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005833 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005833 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ARG A 1 301 301 ARG ARG . 
F 4 ADP A 1 302 302 ADP ADP . 
G 5 NLG A 1 303 303 NLG NLG . 
H 6 MG A 1 304 304 MG MG . 
I 3 ARG B 1 301 301 ARG ARG . 
J 7 X2W B 1 303 303 X2W X2W . 
K 8 ATP C 1 301 301 ATP ATP . 
L 6 MG C 1 302 302 MG MG . 
M 9 GLN C 1 303 303 GLN GLN . 
N 8 ATP D 1 301 301 ATP ATP . 
O 6 MG D 1 302 302 MG MG . 
P 9 GLN D 1 303 303 GLN GLN . 
Q 10 HOH A 1 2001 2001 HOH HOH . 
Q 10 HOH A 2 2002 2002 HOH HOH . 
Q 10 HOH A 3 2003 2003 HOH HOH . 
Q 10 HOH A 4 2004 2004 HOH HOH . 
Q 10 HOH A 5 2005 2005 HOH HOH . 
Q 10 HOH A 6 2006 2006 HOH HOH . 
Q 10 HOH A 7 2007 2007 HOH HOH . 
Q 10 HOH A 8 2008 2008 HOH HOH . 
Q 10 HOH A 9 2009 2009 HOH HOH . 
Q 10 HOH A 10 2010 2010 HOH HOH . 
Q 10 HOH A 11 2011 2011 HOH HOH . 
Q 10 HOH A 12 2012 2012 HOH HOH . 
Q 10 HOH A 13 2013 2013 HOH HOH . 
Q 10 HOH A 14 2014 2014 HOH HOH . 
Q 10 HOH A 15 2015 2015 HOH HOH . 
Q 10 HOH A 16 2016 2016 HOH HOH . 
Q 10 HOH A 17 2017 2017 HOH HOH . 
Q 10 HOH A 18 2018 2018 HOH HOH . 
Q 10 HOH A 19 2019 2019 HOH HOH . 
Q 10 HOH A 20 2020 2020 HOH HOH . 
Q 10 HOH A 21 2021 2021 HOH HOH . 
Q 10 HOH A 22 2022 2022 HOH HOH . 
Q 10 HOH A 23 2023 2023 HOH HOH . 
Q 10 HOH A 24 2024 2024 HOH HOH . 
Q 10 HOH A 25 2025 2025 HOH HOH . 
Q 10 HOH A 26 2026 2026 HOH HOH . 
Q 10 HOH A 27 2027 2027 HOH HOH . 
Q 10 HOH A 28 2028 2028 HOH HOH . 
Q 10 HOH A 29 2029 2029 HOH HOH . 
Q 10 HOH A 30 2030 2030 HOH HOH . 
Q 10 HOH A 31 2031 2031 HOH HOH . 
Q 10 HOH A 32 2032 2032 HOH HOH . 
Q 10 HOH A 33 2033 2033 HOH HOH . 
Q 10 HOH A 34 2034 2034 HOH HOH . 
Q 10 HOH A 35 2035 2035 HOH HOH . 
Q 10 HOH A 36 2036 2036 HOH HOH . 
Q 10 HOH A 37 2037 2037 HOH HOH . 
R 10 HOH B 1 2001 2001 HOH HOH . 
R 10 HOH B 2 2002 2002 HOH HOH . 
R 10 HOH B 3 2003 2003 HOH HOH . 
R 10 HOH B 4 2004 2004 HOH HOH . 
R 10 HOH B 5 2005 2005 HOH HOH . 
R 10 HOH B 6 2006 2006 HOH HOH . 
R 10 HOH B 7 2007 2007 HOH HOH . 
R 10 HOH B 8 2008 2008 HOH HOH . 
R 10 HOH B 9 2009 2009 HOH HOH . 
R 10 HOH B 10 2010 2010 HOH HOH . 
R 10 HOH B 11 2011 2011 HOH HOH . 
R 10 HOH B 12 2012 2012 HOH HOH . 
R 10 HOH B 13 2013 2013 HOH HOH . 
R 10 HOH B 14 2014 2014 HOH HOH . 
R 10 HOH B 15 2015 2015 HOH HOH . 
R 10 HOH B 16 2016 2016 HOH HOH . 
R 10 HOH B 17 2017 2017 HOH HOH . 
R 10 HOH B 18 2018 2018 HOH HOH . 
R 10 HOH B 19 2019 2019 HOH HOH . 
R 10 HOH B 20 2020 2020 HOH HOH . 
R 10 HOH B 21 2021 2021 HOH HOH . 
R 10 HOH B 22 2022 2022 HOH HOH . 
R 10 HOH B 23 2023 2023 HOH HOH . 
R 10 HOH B 24 2024 2024 HOH HOH . 
R 10 HOH B 25 2025 2025 HOH HOH . 
R 10 HOH B 26 2026 2026 HOH HOH . 
R 10 HOH B 27 2027 2027 HOH HOH . 
R 10 HOH B 28 2028 2028 HOH HOH . 
R 10 HOH B 29 2029 2029 HOH HOH . 
R 10 HOH B 30 2030 2030 HOH HOH . 
S 10 HOH C 1 2001 2001 HOH HOH . 
S 10 HOH C 2 2002 2002 HOH HOH . 
S 10 HOH C 3 2003 2003 HOH HOH . 
S 10 HOH C 4 2004 2004 HOH HOH . 
S 10 HOH C 5 2005 2005 HOH HOH . 
S 10 HOH C 6 2006 2006 HOH HOH . 
S 10 HOH C 7 2007 2007 HOH HOH . 
S 10 HOH C 8 2008 2008 HOH HOH . 
S 10 HOH C 9 2009 2009 HOH HOH . 
S 10 HOH C 10 2010 2010 HOH HOH . 
S 10 HOH C 11 2011 2011 HOH HOH . 
S 10 HOH C 12 2012 2012 HOH HOH . 
S 10 HOH C 13 2013 2013 HOH HOH . 
S 10 HOH C 14 2014 2014 HOH HOH . 
S 10 HOH C 15 2015 2015 HOH HOH . 
S 10 HOH C 16 2016 2016 HOH HOH . 
S 10 HOH C 17 2017 2017 HOH HOH . 
S 10 HOH C 18 2018 2018 HOH HOH . 
S 10 HOH C 19 2019 2019 HOH HOH . 
S 10 HOH C 20 2020 2020 HOH HOH . 
T 10 HOH D 1 2001 2001 HOH HOH . 
T 10 HOH D 2 2002 2002 HOH HOH . 
T 10 HOH D 3 2003 2003 HOH HOH . 
T 10 HOH D 4 2004 2004 HOH HOH . 
T 10 HOH D 5 2005 2005 HOH HOH . 
T 10 HOH D 6 2006 2006 HOH HOH . 
T 10 HOH D 7 2007 2007 HOH HOH . 
T 10 HOH D 8 2008 2008 HOH HOH . 
T 10 HOH D 9 2009 2009 HOH HOH . 
T 10 HOH D 10 2010 2010 HOH HOH . 
T 10 HOH D 11 2011 2011 HOH HOH . 
T 10 HOH D 12 2012 2012 HOH HOH . 
T 10 HOH D 13 2013 2013 HOH HOH . 
T 10 HOH D 14 2014 2014 HOH HOH . 
T 10 HOH D 15 2015 2015 HOH HOH . 
T 10 HOH D 16 2016 2016 HOH HOH . 
T 10 HOH D 17 2017 2017 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ARG . . . I 3 93.659 66.884 46.011 1 69.57 ? N ARG 301 B 1 
HETATM 2 C CA ARG . . . I 3 94.16 67.562 47.193 1 72.34 ? CA ARG 301 B 1 
HETATM 3 C C ARG . . . I 3 93.073 68.485 47.796 1 74 ? C ARG 301 B 1 
HETATM 4 O O ARG . . . I 3 93.14 68.78 48.989 1 75.99 ? O ARG 301 B 1 
HETATM 5 C CB ARG . . . I 3 95.479 68.295 46.854 1 74.14 ? CB ARG 301 B 1 
HETATM 6 C CG ARG . . . I 3 95.596 69.754 47.279 1 75.27 ? CG ARG 301 B 1 
HETATM 7 C CD ARG . . . I 3 95.413 70.759 46.14 1 75.74 ? CD ARG 301 B 1 
HETATM 8 N NE ARG . . . I 3 96.708 71.217 45.633 1 82.87 ? NE ARG 301 B 1 
HETATM 9 C CZ ARG . . . I 3 96.942 72.378 45.028 1 84.66 ? CZ ARG 301 B 1 
HETATM 10 N NH1 ARG . . . I 3 95.955 73.224 44.791 1 86.09 ? NH1 ARG 301 B 1 
HETATM 11 N NH2 ARG . . . I 3 98.174 72.685 44.639 1 86.75 ? NH2 ARG 301 B 1 
HETATM 12 O OXT ARG . . . I 3 92.1 68.968 47.173 1 76.48 ? OXT ARG 301 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#