data_4USJ # _model_server_result.job_id zCHML4BLvWCb2UC7u_Zg5A _model_server_result.datetime_utc '2024-11-06 04:29:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4usj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 4USJ # _exptl.entry_id 4USJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4USJ _cell.length_a 171.43 _cell.length_b 171.43 _cell.length_c 171.43 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4USJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O2B ADP . A ADP 302 1_555 H MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc2 F O1A ADP . A ADP 302 1_555 H MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc3 H MG MG . A MG 304 1_555 Q O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 H MG MG . A MG 304 1_555 Q O HOH . A HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc5 H MG MG . A MG 304 1_555 Q O HOH . A HOH 2031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 C O GLY 54 C GLY 54 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc7 K O1G ATP . C ATP 301 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc8 K O2B ATP . C ATP 301 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc9 K O2A ATP . C ATP 301 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc10 L MG MG . C MG 302 1_555 S O HOH . C HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc11 L MG MG . C MG 302 1_555 S O HOH . C HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc12 D O GLY 54 D GLY 54 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc13 N O2A ATP . D ATP 301 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc14 N O2B ATP . D ATP 301 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc15 N O1G ATP . D ATP 301 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc16 O MG MG . D MG 302 1_555 T O HOH . D HOH 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc17 O MG MG . D MG 302 1_555 T O HOH . D HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 4USJ _atom_sites.fract_transf_matrix[1][1] 0.005833 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ARG A 1 301 301 ARG ARG . F 4 ADP A 1 302 302 ADP ADP . G 5 NLG A 1 303 303 NLG NLG . H 6 MG A 1 304 304 MG MG . I 3 ARG B 1 301 301 ARG ARG . J 7 X2W B 1 303 303 X2W X2W . K 8 ATP C 1 301 301 ATP ATP . L 6 MG C 1 302 302 MG MG . M 9 GLN C 1 303 303 GLN GLN . N 8 ATP D 1 301 301 ATP ATP . O 6 MG D 1 302 302 MG MG . P 9 GLN D 1 303 303 GLN GLN . Q 10 HOH A 1 2001 2001 HOH HOH . Q 10 HOH A 2 2002 2002 HOH HOH . Q 10 HOH A 3 2003 2003 HOH HOH . Q 10 HOH A 4 2004 2004 HOH HOH . Q 10 HOH A 5 2005 2005 HOH HOH . Q 10 HOH A 6 2006 2006 HOH HOH . Q 10 HOH A 7 2007 2007 HOH HOH . Q 10 HOH A 8 2008 2008 HOH HOH . Q 10 HOH A 9 2009 2009 HOH HOH . Q 10 HOH A 10 2010 2010 HOH HOH . Q 10 HOH A 11 2011 2011 HOH HOH . Q 10 HOH A 12 2012 2012 HOH HOH . Q 10 HOH A 13 2013 2013 HOH HOH . Q 10 HOH A 14 2014 2014 HOH HOH . Q 10 HOH A 15 2015 2015 HOH HOH . Q 10 HOH A 16 2016 2016 HOH HOH . Q 10 HOH A 17 2017 2017 HOH HOH . Q 10 HOH A 18 2018 2018 HOH HOH . Q 10 HOH A 19 2019 2019 HOH HOH . Q 10 HOH A 20 2020 2020 HOH HOH . Q 10 HOH A 21 2021 2021 HOH HOH . Q 10 HOH A 22 2022 2022 HOH HOH . Q 10 HOH A 23 2023 2023 HOH HOH . Q 10 HOH A 24 2024 2024 HOH HOH . Q 10 HOH A 25 2025 2025 HOH HOH . Q 10 HOH A 26 2026 2026 HOH HOH . Q 10 HOH A 27 2027 2027 HOH HOH . Q 10 HOH A 28 2028 2028 HOH HOH . Q 10 HOH A 29 2029 2029 HOH HOH . Q 10 HOH A 30 2030 2030 HOH HOH . Q 10 HOH A 31 2031 2031 HOH HOH . Q 10 HOH A 32 2032 2032 HOH HOH . Q 10 HOH A 33 2033 2033 HOH HOH . Q 10 HOH A 34 2034 2034 HOH HOH . Q 10 HOH A 35 2035 2035 HOH HOH . Q 10 HOH A 36 2036 2036 HOH HOH . Q 10 HOH A 37 2037 2037 HOH HOH . R 10 HOH B 1 2001 2001 HOH HOH . R 10 HOH B 2 2002 2002 HOH HOH . R 10 HOH B 3 2003 2003 HOH HOH . R 10 HOH B 4 2004 2004 HOH HOH . R 10 HOH B 5 2005 2005 HOH HOH . R 10 HOH B 6 2006 2006 HOH HOH . R 10 HOH B 7 2007 2007 HOH HOH . R 10 HOH B 8 2008 2008 HOH HOH . R 10 HOH B 9 2009 2009 HOH HOH . R 10 HOH B 10 2010 2010 HOH HOH . R 10 HOH B 11 2011 2011 HOH HOH . R 10 HOH B 12 2012 2012 HOH HOH . R 10 HOH B 13 2013 2013 HOH HOH . R 10 HOH B 14 2014 2014 HOH HOH . R 10 HOH B 15 2015 2015 HOH HOH . R 10 HOH B 16 2016 2016 HOH HOH . R 10 HOH B 17 2017 2017 HOH HOH . R 10 HOH B 18 2018 2018 HOH HOH . R 10 HOH B 19 2019 2019 HOH HOH . R 10 HOH B 20 2020 2020 HOH HOH . R 10 HOH B 21 2021 2021 HOH HOH . R 10 HOH B 22 2022 2022 HOH HOH . R 10 HOH B 23 2023 2023 HOH HOH . R 10 HOH B 24 2024 2024 HOH HOH . R 10 HOH B 25 2025 2025 HOH HOH . R 10 HOH B 26 2026 2026 HOH HOH . R 10 HOH B 27 2027 2027 HOH HOH . R 10 HOH B 28 2028 2028 HOH HOH . R 10 HOH B 29 2029 2029 HOH HOH . R 10 HOH B 30 2030 2030 HOH HOH . S 10 HOH C 1 2001 2001 HOH HOH . S 10 HOH C 2 2002 2002 HOH HOH . S 10 HOH C 3 2003 2003 HOH HOH . S 10 HOH C 4 2004 2004 HOH HOH . S 10 HOH C 5 2005 2005 HOH HOH . S 10 HOH C 6 2006 2006 HOH HOH . S 10 HOH C 7 2007 2007 HOH HOH . S 10 HOH C 8 2008 2008 HOH HOH . S 10 HOH C 9 2009 2009 HOH HOH . S 10 HOH C 10 2010 2010 HOH HOH . S 10 HOH C 11 2011 2011 HOH HOH . S 10 HOH C 12 2012 2012 HOH HOH . S 10 HOH C 13 2013 2013 HOH HOH . S 10 HOH C 14 2014 2014 HOH HOH . S 10 HOH C 15 2015 2015 HOH HOH . S 10 HOH C 16 2016 2016 HOH HOH . S 10 HOH C 17 2017 2017 HOH HOH . S 10 HOH C 18 2018 2018 HOH HOH . S 10 HOH C 19 2019 2019 HOH HOH . S 10 HOH C 20 2020 2020 HOH HOH . T 10 HOH D 1 2001 2001 HOH HOH . T 10 HOH D 2 2002 2002 HOH HOH . T 10 HOH D 3 2003 2003 HOH HOH . T 10 HOH D 4 2004 2004 HOH HOH . T 10 HOH D 5 2005 2005 HOH HOH . T 10 HOH D 6 2006 2006 HOH HOH . T 10 HOH D 7 2007 2007 HOH HOH . T 10 HOH D 8 2008 2008 HOH HOH . T 10 HOH D 9 2009 2009 HOH HOH . T 10 HOH D 10 2010 2010 HOH HOH . T 10 HOH D 11 2011 2011 HOH HOH . T 10 HOH D 12 2012 2012 HOH HOH . T 10 HOH D 13 2013 2013 HOH HOH . T 10 HOH D 14 2014 2014 HOH HOH . T 10 HOH D 15 2015 2015 HOH HOH . T 10 HOH D 16 2016 2016 HOH HOH . T 10 HOH D 17 2017 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 8 88.039 94.238 65.784 1 54.59 ? PG ATP 301 C 1 HETATM 2 O O1G ATP . . . K 8 86.747 93.524 65.492 1 49.63 ? O1G ATP 301 C 1 HETATM 3 O O2G ATP . . . K 8 87.988 95.683 65.417 1 52.3 ? O2G ATP 301 C 1 HETATM 4 O O3G ATP . . . K 8 89.261 93.498 65.224 1 51.83 ? O3G ATP 301 C 1 HETATM 5 P PB ATP . . . K 8 86.984 94.519 68.388 1 51.7 ? PB ATP 301 C 1 HETATM 6 O O1B ATP . . . K 8 87.402 95.367 69.544 1 52.93 ? O1B ATP 301 C 1 HETATM 7 O O2B ATP . . . K 8 85.777 95.036 67.639 1 56.95 ? O2B ATP 301 C 1 HETATM 8 O O3B ATP . . . K 8 88.226 94.253 67.39 1 50.29 ? O3B ATP 301 C 1 HETATM 9 P PA ATP . . . K 8 86.168 91.848 68.21 1 50 ? PA ATP 301 C 1 HETATM 10 O O1A ATP . . . K 8 87.223 90.914 67.612 1 42.85 ? O1A ATP 301 C 1 HETATM 11 O O2A ATP . . . K 8 85.019 92.382 67.407 1 49.45 ? O2A ATP 301 C 1 HETATM 12 O O3A ATP . . . K 8 86.753 93.088 69.031 1 49.34 ? O3A ATP 301 C 1 HETATM 13 O O5' ATP . . . K 8 85.535 91.15 69.499 1 48.39 ? O5' ATP 301 C 1 HETATM 14 C C5' ATP . . . K 8 85.473 89.737 69.476 1 49.28 ? C5' ATP 301 C 1 HETATM 15 C C4' ATP . . . K 8 84.556 89.251 70.577 1 48.62 ? C4' ATP 301 C 1 HETATM 16 O O4' ATP . . . K 8 85.108 89.603 71.848 1 48.39 ? O4' ATP 301 C 1 HETATM 17 C C3' ATP . . . K 8 83.18 89.863 70.583 1 47.62 ? C3' ATP 301 C 1 HETATM 18 O O3' ATP . . . K 8 82.356 89.194 69.654 1 45.25 ? O3' ATP 301 C 1 HETATM 19 C C2' ATP . . . K 8 82.809 89.612 72.027 1 49.24 ? C2' ATP 301 C 1 HETATM 20 O O2' ATP . . . K 8 82.475 88.237 72.223 1 48.8 ? O2' ATP 301 C 1 HETATM 21 C C1' ATP . . . K 8 84.089 89.836 72.788 1 46.55 ? C1' ATP 301 C 1 HETATM 22 N N9 ATP . . . K 8 84.361 91.206 73.213 1 48.29 ? N9 ATP 301 C 1 HETATM 23 C C8 ATP . . . K 8 84.985 92.187 72.545 1 47.4 ? C8 ATP 301 C 1 HETATM 24 N N7 ATP . . . K 8 85.078 93.296 73.323 1 45.48 ? N7 ATP 301 C 1 HETATM 25 C C5 ATP . . . K 8 84.549 93.035 74.505 1 46.09 ? C5 ATP 301 C 1 HETATM 26 C C6 ATP . . . K 8 84.343 93.719 75.78 1 46.67 ? C6 ATP 301 C 1 HETATM 27 N N6 ATP . . . K 8 84.678 95.001 76.054 1 47.52 ? N6 ATP 301 C 1 HETATM 28 N N1 ATP . . . K 8 83.783 93.017 76.743 1 47.21 ? N1 ATP 301 C 1 HETATM 29 C C2 ATP . . . K 8 83.36 91.776 76.6 1 48.23 ? C2 ATP 301 C 1 HETATM 30 N N3 ATP . . . K 8 83.506 91.079 75.481 1 49.86 ? N3 ATP 301 C 1 HETATM 31 C C4 ATP . . . K 8 84.092 91.652 74.424 1 50.01 ? C4 ATP 301 C 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #