data_4USJ # _model_server_result.job_id LreHcj-T2A9MTm8GzAXLhA _model_server_result.datetime_utc '2024-12-21 12:50:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4usj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":303}' # _entry.id 4USJ # _exptl.entry_id 4USJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 269.146 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-ACETYL-L-GLUTAMYL 5-PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4USJ _cell.length_a 171.43 _cell.length_b 171.43 _cell.length_c 171.43 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4USJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O2B ADP . A ADP 302 1_555 H MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc2 F O1A ADP . A ADP 302 1_555 H MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc3 H MG MG . A MG 304 1_555 Q O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 H MG MG . A MG 304 1_555 Q O HOH . A HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc5 H MG MG . A MG 304 1_555 Q O HOH . A HOH 2031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 C O GLY 54 C GLY 54 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc7 K O1G ATP . C ATP 301 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc8 K O2B ATP . C ATP 301 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc9 K O2A ATP . C ATP 301 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc10 L MG MG . C MG 302 1_555 S O HOH . C HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc11 L MG MG . C MG 302 1_555 S O HOH . C HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc12 D O GLY 54 D GLY 54 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc13 N O2A ATP . D ATP 301 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc14 N O2B ATP . D ATP 301 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc15 N O1G ATP . D ATP 301 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc16 O MG MG . D MG 302 1_555 T O HOH . D HOH 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc17 O MG MG . D MG 302 1_555 T O HOH . D HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? # _chem_comp.formula 'C7 H12 N O8 P' _chem_comp.formula_weight 269.146 _chem_comp.id X2W _chem_comp.mon_nstd_flag n _chem_comp.name 'N-ACETYL-L-GLUTAMYL 5-PHOSPHATE' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms N-ACETYL-5-OXO-5-(PHOSPHONOOXY)-L-NORVALINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA CB X2W sing 492 n n CA C X2W sing 493 n n CA N1 X2W sing 494 n n CB CG X2W sing 495 n n C O X2W doub 496 n n C OXT X2W sing 497 n n C1 O1 X2W doub 498 n n C1 N1 X2W sing 499 n n C1 C2 X2W sing 500 n n P O3P X2W sing 501 n n P O2P X2W sing 502 n n P O1P X2W doub 503 n n P OE2 X2W sing 504 n n C3 O2 X2W doub 505 n n C3 CG X2W sing 506 n n C3 OE2 X2W sing 507 n n CA HA X2W sing 508 n n CB HB1C X2W sing 509 n n CB HB2C X2W sing 510 n n N1 H1 X2W sing 511 n n CG HG1C X2W sing 512 n n CG HG2C X2W sing 513 n n OXT HXT X2W sing 514 n n C2 H21C X2W sing 515 n n C2 H22C X2W sing 516 n n C2 H23C X2W sing 517 n n O3P H3P X2W sing 518 n n O2P H2P X2W sing 519 n n # _atom_sites.entry_id 4USJ _atom_sites.fract_transf_matrix[1][1] 0.005833 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ARG A 1 301 301 ARG ARG . F 4 ADP A 1 302 302 ADP ADP . G 5 NLG A 1 303 303 NLG NLG . H 6 MG A 1 304 304 MG MG . I 3 ARG B 1 301 301 ARG ARG . J 7 X2W B 1 303 303 X2W X2W . K 8 ATP C 1 301 301 ATP ATP . L 6 MG C 1 302 302 MG MG . M 9 GLN C 1 303 303 GLN GLN . N 8 ATP D 1 301 301 ATP ATP . O 6 MG D 1 302 302 MG MG . P 9 GLN D 1 303 303 GLN GLN . Q 10 HOH A 1 2001 2001 HOH HOH . Q 10 HOH A 2 2002 2002 HOH HOH . Q 10 HOH A 3 2003 2003 HOH HOH . Q 10 HOH A 4 2004 2004 HOH HOH . Q 10 HOH A 5 2005 2005 HOH HOH . Q 10 HOH A 6 2006 2006 HOH HOH . Q 10 HOH A 7 2007 2007 HOH HOH . Q 10 HOH A 8 2008 2008 HOH HOH . Q 10 HOH A 9 2009 2009 HOH HOH . Q 10 HOH A 10 2010 2010 HOH HOH . Q 10 HOH A 11 2011 2011 HOH HOH . Q 10 HOH A 12 2012 2012 HOH HOH . Q 10 HOH A 13 2013 2013 HOH HOH . Q 10 HOH A 14 2014 2014 HOH HOH . Q 10 HOH A 15 2015 2015 HOH HOH . Q 10 HOH A 16 2016 2016 HOH HOH . Q 10 HOH A 17 2017 2017 HOH HOH . Q 10 HOH A 18 2018 2018 HOH HOH . Q 10 HOH A 19 2019 2019 HOH HOH . Q 10 HOH A 20 2020 2020 HOH HOH . Q 10 HOH A 21 2021 2021 HOH HOH . Q 10 HOH A 22 2022 2022 HOH HOH . Q 10 HOH A 23 2023 2023 HOH HOH . Q 10 HOH A 24 2024 2024 HOH HOH . Q 10 HOH A 25 2025 2025 HOH HOH . Q 10 HOH A 26 2026 2026 HOH HOH . Q 10 HOH A 27 2027 2027 HOH HOH . Q 10 HOH A 28 2028 2028 HOH HOH . Q 10 HOH A 29 2029 2029 HOH HOH . Q 10 HOH A 30 2030 2030 HOH HOH . Q 10 HOH A 31 2031 2031 HOH HOH . Q 10 HOH A 32 2032 2032 HOH HOH . Q 10 HOH A 33 2033 2033 HOH HOH . Q 10 HOH A 34 2034 2034 HOH HOH . Q 10 HOH A 35 2035 2035 HOH HOH . Q 10 HOH A 36 2036 2036 HOH HOH . Q 10 HOH A 37 2037 2037 HOH HOH . R 10 HOH B 1 2001 2001 HOH HOH . R 10 HOH B 2 2002 2002 HOH HOH . R 10 HOH B 3 2003 2003 HOH HOH . R 10 HOH B 4 2004 2004 HOH HOH . R 10 HOH B 5 2005 2005 HOH HOH . R 10 HOH B 6 2006 2006 HOH HOH . R 10 HOH B 7 2007 2007 HOH HOH . R 10 HOH B 8 2008 2008 HOH HOH . R 10 HOH B 9 2009 2009 HOH HOH . R 10 HOH B 10 2010 2010 HOH HOH . R 10 HOH B 11 2011 2011 HOH HOH . R 10 HOH B 12 2012 2012 HOH HOH . R 10 HOH B 13 2013 2013 HOH HOH . R 10 HOH B 14 2014 2014 HOH HOH . R 10 HOH B 15 2015 2015 HOH HOH . R 10 HOH B 16 2016 2016 HOH HOH . R 10 HOH B 17 2017 2017 HOH HOH . R 10 HOH B 18 2018 2018 HOH HOH . R 10 HOH B 19 2019 2019 HOH HOH . R 10 HOH B 20 2020 2020 HOH HOH . R 10 HOH B 21 2021 2021 HOH HOH . R 10 HOH B 22 2022 2022 HOH HOH . R 10 HOH B 23 2023 2023 HOH HOH . R 10 HOH B 24 2024 2024 HOH HOH . R 10 HOH B 25 2025 2025 HOH HOH . R 10 HOH B 26 2026 2026 HOH HOH . R 10 HOH B 27 2027 2027 HOH HOH . R 10 HOH B 28 2028 2028 HOH HOH . R 10 HOH B 29 2029 2029 HOH HOH . R 10 HOH B 30 2030 2030 HOH HOH . S 10 HOH C 1 2001 2001 HOH HOH . S 10 HOH C 2 2002 2002 HOH HOH . S 10 HOH C 3 2003 2003 HOH HOH . S 10 HOH C 4 2004 2004 HOH HOH . S 10 HOH C 5 2005 2005 HOH HOH . S 10 HOH C 6 2006 2006 HOH HOH . S 10 HOH C 7 2007 2007 HOH HOH . S 10 HOH C 8 2008 2008 HOH HOH . S 10 HOH C 9 2009 2009 HOH HOH . S 10 HOH C 10 2010 2010 HOH HOH . S 10 HOH C 11 2011 2011 HOH HOH . S 10 HOH C 12 2012 2012 HOH HOH . S 10 HOH C 13 2013 2013 HOH HOH . S 10 HOH C 14 2014 2014 HOH HOH . S 10 HOH C 15 2015 2015 HOH HOH . S 10 HOH C 16 2016 2016 HOH HOH . S 10 HOH C 17 2017 2017 HOH HOH . S 10 HOH C 18 2018 2018 HOH HOH . S 10 HOH C 19 2019 2019 HOH HOH . S 10 HOH C 20 2020 2020 HOH HOH . T 10 HOH D 1 2001 2001 HOH HOH . T 10 HOH D 2 2002 2002 HOH HOH . T 10 HOH D 3 2003 2003 HOH HOH . T 10 HOH D 4 2004 2004 HOH HOH . T 10 HOH D 5 2005 2005 HOH HOH . T 10 HOH D 6 2006 2006 HOH HOH . T 10 HOH D 7 2007 2007 HOH HOH . T 10 HOH D 8 2008 2008 HOH HOH . T 10 HOH D 9 2009 2009 HOH HOH . T 10 HOH D 10 2010 2010 HOH HOH . T 10 HOH D 11 2011 2011 HOH HOH . T 10 HOH D 12 2012 2012 HOH HOH . T 10 HOH D 13 2013 2013 HOH HOH . T 10 HOH D 14 2014 2014 HOH HOH . T 10 HOH D 15 2015 2015 HOH HOH . T 10 HOH D 16 2016 2016 HOH HOH . T 10 HOH D 17 2017 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA X2W . . . J 7 79.261 90.172 36.626 1 51.41 ? CA X2W 303 B 1 HETATM 2 C CB X2W . . . J 7 78.764 88.705 36.917 1 48.07 ? CB X2W 303 B 1 HETATM 3 C CG X2W . . . J 7 79.497 87.622 36.096 1 51.87 ? CG X2W 303 B 1 HETATM 4 C C3 X2W . . . J 7 80.775 87.004 36.631 1 59.08 ? C3 X2W 303 B 1 HETATM 5 C C X2W . . . J 7 78.899 90.852 35.324 1 49.62 ? C X2W 303 B 1 HETATM 6 O O X2W . . . J 7 79.486 90.634 34.253 1 51.96 ? O X2W 303 B 1 HETATM 7 O OXT X2W . . . J 7 78.019 91.72 35.371 1 48 ? OXT X2W 303 B 1 HETATM 8 C C1 X2W . . . J 7 79.461 92.211 38.093 1 48.69 ? C1 X2W 303 B 1 HETATM 9 O O1 X2W . . . J 7 80.554 92.541 37.683 1 52.01 ? O1 X2W 303 B 1 HETATM 10 P P X2W . . . J 7 82.932 85.924 34.674 1 105.47 ? P X2W 303 B 1 HETATM 11 O O2P X2W . . . J 7 84.18 85.366 35.345 1 85.15 ? O2P X2W 303 B 1 HETATM 12 O O1P X2W . . . J 7 82.672 85.029 33.437 1 85.24 ? O1P X2W 303 B 1 HETATM 13 O O3P X2W . . . J 7 83.095 87.389 34.34 1 102.05 ? O3P X2W 303 B 1 HETATM 14 N N1 X2W . . . J 7 78.79 91.127 37.664 1 52.09 ? N1 X2W 303 B 1 HETATM 15 C C2 X2W . . . J 7 78.788 93.036 39.133 1 47.57 ? C2 X2W 303 B 1 HETATM 16 O O2 X2W . . . J 7 81.004 87.358 37.792 1 47.79 ? O2 X2W 303 B 1 HETATM 17 O OE2 X2W . . . J 7 81.628 85.982 35.81 1 86.93 ? OE2 X2W 303 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #