data_4UT9 # _model_server_result.job_id 5clPTxyRreX0yJDyiROYpg _model_server_result.datetime_utc '2024-10-18 12:30:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ut9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":567}' # _entry.id 4UT9 # _exptl.entry_id 4UT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.52 _cell.angle_beta 85.69 _cell.angle_gamma 83.9 _cell.entry_id 4UT9 _cell.length_a 57.522 _cell.length_b 102.235 _cell.length_c 131.092 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS trimeric 3 author_and_software_defined_assembly 1 PQS trimeric 3 author_and_software_defined_assembly 2 PQS trimeric 3 author_and_software_defined_assembly 3 PQS trimeric 3 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,M 1 1 B,F,J,N 2 1 C,H,L,O 3 1 D,G,K,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 60 A CYS 60 1_555 A SG CYS 121 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 74 A CYS 74 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 92 A CYS 92 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 185 A CYS 185 1_555 A SG CYS 285 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 302 A CYS 302 1_555 A SG CYS 333 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 B SG CYS 3 B CYS 3 1_555 B SG CYS 30 B CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 60 B CYS 60 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf9 B SG CYS 74 B CYS 74 1_555 B SG CYS 105 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf10 B SG CYS 92 B CYS 92 1_555 B SG CYS 116 B CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 B SG CYS 185 B CYS 185 1_555 B SG CYS 285 B CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf12 B SG CYS 302 B CYS 302 1_555 B SG CYS 333 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf13 C SG CYS 3 C CYS 3 1_555 C SG CYS 30 C CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 C SG CYS 60 C CYS 60 1_555 C SG CYS 121 C CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf15 C SG CYS 74 C CYS 74 1_555 C SG CYS 105 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf16 C SG CYS 92 C CYS 92 1_555 C SG CYS 116 C CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf17 C SG CYS 185 C CYS 185 1_555 C SG CYS 285 C CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf18 C SG CYS 302 C CYS 302 1_555 C SG CYS 333 C CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf19 D SG CYS 3 D CYS 3 1_555 D SG CYS 30 D CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf20 D SG CYS 60 D CYS 60 1_555 D SG CYS 121 D CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf21 D SG CYS 74 D CYS 74 1_555 D SG CYS 105 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf22 D SG CYS 92 D CYS 92 1_555 D SG CYS 116 D CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf23 D SG CYS 185 D CYS 185 1_555 D SG CYS 285 D CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf24 D SG CYS 302 D CYS 302 1_555 D SG CYS 333 D CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf25 E SG CYS 24 H CYS 22 1_555 E SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf26 F SG CYS 24 I CYS 22 1_555 F SG CYS 98 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf27 G SG CYS 24 J CYS 22 1_555 G SG CYS 98 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf28 H SG CYS 24 K CYS 22 1_555 H SG CYS 98 K CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf29 I SG CYS 28 L CYS 23 1_555 I SG CYS 96 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf30 J SG CYS 28 M CYS 23 1_555 J SG CYS 96 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf31 K SG CYS 28 N CYS 23 1_555 K SG CYS 96 N CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf32 L SG CYS 28 O CYS 23 1_555 L SG CYS 96 O CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 67 A ASN 67 1_555 M C1 NAG . A NAG 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B ND2 ASN 67 B ASN 67 1_555 N C1 NAG . B NAG 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 C ND2 ASN 67 C ASN 67 1_555 O C1 NAG . C NAG 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 D ND2 ASN 67 D ASN 67 1_555 P C1 NAG . D NAG 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4UT9 _atom_sites.fract_transf_matrix[1][1] 0.017385 _atom_sites.fract_transf_matrix[1][2] -0.001858 _atom_sites.fract_transf_matrix[1][3] -0.001277 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009837 _atom_sites.fract_transf_matrix[2][3] -0.000177 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 NAG A 1 567 567 NAG NAG . N 4 NAG B 1 567 567 NAG NAG . O 4 NAG C 1 567 567 NAG NAG . P 4 NAG D 1 567 567 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 4 -69.613 -40.821 39.064 1 123.38 ? C1 NAG 567 A 1 HETATM 2 C C2 NAG . . . M 4 -70.414 -42.126 39.053 1 124.07 ? C2 NAG 567 A 1 HETATM 3 C C3 NAG . . . M 4 -69.52 -43.326 39.373 1 124.3 ? C3 NAG 567 A 1 HETATM 4 C C4 NAG . . . M 4 -68.261 -43.325 38.51 1 124.47 ? C4 NAG 567 A 1 HETATM 5 C C5 NAG . . . M 4 -67.534 -41.985 38.618 1 124.98 ? C5 NAG 567 A 1 HETATM 6 C C6 NAG . . . M 4 -66.336 -41.876 37.7 1 124.31 ? C6 NAG 567 A 1 HETATM 7 C C7 NAG . . . M 4 -72.783 -41.896 39.721 1 124.42 ? C7 NAG 567 A 1 HETATM 8 C C8 NAG . . . M 4 -73.733 -41.88 40.881 1 123.84 ? C8 NAG 567 A 1 HETATM 9 N N2 NAG . . . M 4 -71.485 -42.021 40.033 1 124.28 ? N2 NAG 567 A 1 HETATM 10 O O3 NAG . . . M 4 -70.248 -44.53 39.152 1 124.09 ? O3 NAG 567 A 1 HETATM 11 O O4 NAG . . . M 4 -67.396 -44.373 38.941 1 123.94 ? O4 NAG 567 A 1 HETATM 12 O O5 NAG . . . M 4 -68.43 -40.918 38.261 1 124.85 ? O5 NAG 567 A 1 HETATM 13 O O6 NAG . . . M 4 -65.571 -40.706 37.961 1 123.45 ? O6 NAG 567 A 1 HETATM 14 O O7 NAG . . . M 4 -73.172 -41.801 38.559 1 125.04 ? O7 NAG 567 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #