data_4UTR
#
_model_server_result.job_id            4aPQWg-nShr5TpHBH3Np-w 
_model_server_result.datetime_utc      '2024-11-05 21:27:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4utr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1300}' 
#
_entry.id    4UTR 
#
_exptl.entry_id    4UTR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4UTR 
_cell.length_a            87.22 
_cell.length_b            87.22 
_cell.length_c            314.04 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UTR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K,L 1 1 
B,G,H,I,J,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 251 A CYS 274 1_555 B SG CYS 251 B CYS 274 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 C C BEZ 1 C BEZ 0 1_555 C N GLY 2 C GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? 
covale ? covale2 C NZ LYS 5 C LYS 4 1_555 K C5 GUA . C GUA 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
metalc ? metalc1 A SG CYS 139 A CYS 162 1_555 D ZN ZN . A ZN 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc2 A SG CYS 142 A CYS 165 1_555 D ZN ZN . A ZN 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc3 A SG CYS 180 A CYS 203 1_555 D ZN ZN . A ZN 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc4 A SG CYS 185 A CYS 208 1_555 D ZN ZN . A ZN 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc5 B SG CYS 139 B CYS 162 1_555 G ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc6 B SG CYS 142 B CYS 165 1_555 G ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc7 B SG CYS 180 B CYS 203 1_555 G ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc8 B SG CYS 185 B CYS 208 1_555 G ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc9 B OD1 ASP 201 B ASP 224 1_555 J NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? 
metalc ? metalc10 B OD1 ASP 201 B ASP 224 12_564 J NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? 
metalc ? metalc11 B OD2 ASP 203 B ASP 226 12_564 J NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
metalc ? metalc12 B OD2 ASP 203 B ASP 226 1_555 J NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 107 n n 
C1 C2 EDO sing 108 n n 
C1 H11 EDO sing 109 n n 
C1 H12 EDO sing 110 n n 
O1 HO1 EDO sing 111 n n 
C2 O2 EDO sing 112 n n 
C2 H21 EDO sing 113 n n 
C2 H22 EDO sing 114 n n 
O2 HO2 EDO sing 115 n n 
#
_atom_sites.entry_id                     4UTR 
_atom_sites.fract_transf_matrix[1][1]    0.011465 
_atom_sites.fract_transf_matrix[1][2]    0.006619 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013239 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003184 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 ZN A 1 1300 1300 ZN ZN . 
E 4 EDO A 1 1301 1301 EDO EDO . 
F 4 EDO A 1 1302 1302 EDO EDO . 
G 3 ZN B 1 1299 1299 ZN ZN . 
H 4 EDO B 1 1300 1300 EDO EDO . 
I 5 DMS B 1 1301 1301 DMS DMS . 
J 6 NA B 1 1302 1302 NA NA . 
K 7 GUA C 1 1299 1299 GUA GUA . 
L 8 HOH A 1 2001 2001 HOH HOH . 
L 8 HOH A 2 2002 2002 HOH HOH . 
L 8 HOH A 3 2003 2003 HOH HOH . 
L 8 HOH A 4 2004 2004 HOH HOH . 
L 8 HOH A 5 2005 2005 HOH HOH . 
L 8 HOH A 6 2006 2006 HOH HOH . 
L 8 HOH A 7 2007 2007 HOH HOH . 
L 8 HOH A 8 2008 2008 HOH HOH . 
L 8 HOH A 9 2009 2009 HOH HOH . 
L 8 HOH A 10 2010 2010 HOH HOH . 
L 8 HOH A 11 2011 2011 HOH HOH . 
L 8 HOH A 12 2012 2012 HOH HOH . 
L 8 HOH A 13 2013 2013 HOH HOH . 
L 8 HOH A 14 2014 2014 HOH HOH . 
L 8 HOH A 15 2015 2015 HOH HOH . 
L 8 HOH A 16 2016 2016 HOH HOH . 
L 8 HOH A 17 2017 2017 HOH HOH . 
L 8 HOH A 18 2018 2018 HOH HOH . 
L 8 HOH A 19 2019 2019 HOH HOH . 
L 8 HOH A 20 2020 2020 HOH HOH . 
L 8 HOH A 21 2021 2021 HOH HOH . 
L 8 HOH A 22 2022 2022 HOH HOH . 
L 8 HOH A 23 2023 2023 HOH HOH . 
L 8 HOH A 24 2024 2024 HOH HOH . 
L 8 HOH A 25 2025 2025 HOH HOH . 
L 8 HOH A 26 2026 2026 HOH HOH . 
L 8 HOH A 27 2027 2027 HOH HOH . 
L 8 HOH A 28 2028 2028 HOH HOH . 
L 8 HOH A 29 2029 2029 HOH HOH . 
L 8 HOH A 30 2030 2030 HOH HOH . 
L 8 HOH A 31 2031 2031 HOH HOH . 
L 8 HOH A 32 2032 2032 HOH HOH . 
L 8 HOH A 33 2033 2033 HOH HOH . 
L 8 HOH A 34 2034 2034 HOH HOH . 
L 8 HOH A 35 2035 2035 HOH HOH . 
L 8 HOH A 36 2036 2036 HOH HOH . 
L 8 HOH A 37 2037 2037 HOH HOH . 
L 8 HOH A 38 2038 2038 HOH HOH . 
L 8 HOH A 39 2039 2039 HOH HOH . 
M 8 HOH B 1 2001 2001 HOH HOH . 
M 8 HOH B 2 2002 2002 HOH HOH . 
M 8 HOH B 3 2003 2003 HOH HOH . 
M 8 HOH B 4 2004 2004 HOH HOH . 
M 8 HOH B 5 2005 2005 HOH HOH . 
M 8 HOH B 6 2006 2006 HOH HOH . 
M 8 HOH B 7 2007 2007 HOH HOH . 
M 8 HOH B 8 2008 2008 HOH HOH . 
M 8 HOH B 9 2009 2009 HOH HOH . 
M 8 HOH B 10 2010 2010 HOH HOH . 
M 8 HOH B 11 2011 2011 HOH HOH . 
M 8 HOH B 12 2012 2012 HOH HOH . 
M 8 HOH B 13 2013 2013 HOH HOH . 
M 8 HOH B 14 2014 2014 HOH HOH . 
M 8 HOH B 15 2015 2015 HOH HOH . 
M 8 HOH B 16 2016 2016 HOH HOH . 
M 8 HOH B 17 2017 2017 HOH HOH . 
M 8 HOH B 18 2018 2018 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 4 0.51 47.378 -39.894 1 59.87 ? C1 EDO 1300 B 1 
HETATM 2 O O1 EDO . . . H 4 1.93 47.543 -40.008 1 67.58 ? O1 EDO 1300 B 1 
HETATM 3 C C2 EDO . . . H 4 0.135 46.662 -38.601 1 54.89 ? C2 EDO 1300 B 1 
HETATM 4 O O2 EDO . . . H 4 -1.035 47.279 -38.012 1 54.51 ? O2 EDO 1300 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#