data_4UTV # _model_server_result.job_id 171PkhlzvoJc7--eGhfrgw _model_server_result.datetime_utc '2024-11-24 01:39:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4utv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1005}' # _entry.id 4UTV # _exptl.entry_id 4UTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.184 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-phenylbutanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UTV _cell.length_a 88.91 _cell.length_b 88.91 _cell.length_c 305.33 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I,J,K,M 1 1 B,E,F,G,H,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C BEZ 1 C BEZ 0 1_555 C N GLY 2 C GLY 1 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.377 ? covale ? covale2 C C BEZ 1 C BEZ 0 1_555 C N GLY 2 C GLY 1 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.374 ? covale ? covale3 C NZ LYS 5 C LYS 4 1_555 I CAJ FSL . C FSL 1004 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.355 ? covale ? covale4 C NZ LYS 5 C LYS 4 1_555 J CAJ F9V . C F9V 1005 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.344 ? metalc ? metalc1 A SG CYS 139 A CYS 162 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A SG CYS 142 A CYS 165 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A SG CYS 180 A CYS 203 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc4 A SG CYS 185 A CYS 208 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc5 B SG CYS 139 B CYS 162 1_555 E ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc6 B SG CYS 142 B CYS 165 1_555 E ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc7 B SG CYS 180 B CYS 203 1_555 E ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc8 B SG CYS 185 B CYS 208 1_555 E ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc9 B OD2 ASP 201 B ASP 224 12_564 H NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc10 B OD2 ASP 201 B ASP 224 1_555 H NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc11 B OD2 ASP 203 B ASP 226 1_555 H NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc12 B OD2 ASP 203 B ASP 226 12_564 H NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.145 ? # _chem_comp.formula 'C10 H10 O4' _chem_comp.formula_weight 194.184 _chem_comp.id F9V _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-phenylbutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAJ OAP F9V doub 140 n n CAJ CAK F9V sing 141 n n CAJ OAM F9V sing 142 n n CAK CAL F9V sing 143 n n CAL CAM F9V sing 144 n n CAL CAU F9V sing 145 n n CAM OAO F9V sing 146 n n CAM OAN F9V doub 147 n n CAU CAT F9V sing 148 n y CAU CAV F9V doub 149 n y CAT CAS F9V doub 150 n y CAS CAR F9V sing 151 n y CAR CAQ F9V doub 152 n y CAQ CAV F9V sing 153 n y CAK HAK1 F9V sing 154 n n CAK HAK2 F9V sing 155 n n OAM HOM F9V sing 156 n n CAL HAL F9V sing 157 n n OAO HAO F9V sing 158 n n CAT HAT F9V sing 159 n n CAV HAV F9V sing 160 n n CAS HAS F9V sing 161 n n CAR HAR F9V sing 162 n n CAQ HAQ F9V sing 163 n n # _atom_sites.entry_id 4UTV _atom_sites.fract_transf_matrix[1][1] 0.011247 _atom_sites.fract_transf_matrix[1][2] 0.006494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 1299 1299 ZN ZN . E 3 ZN B 1 1299 1299 ZN ZN . F 4 EPE B 1 1300 1300 EPE EPE . G 5 DMS B 1 1301 1301 DMS DMS . H 6 NA B 1 1302 1302 NA NA . I 7 FSL C 1 1004 1004 FSL FSL . J 8 F9V C 1 1005 1005 F9V F9V . K 9 HOH A 1 2001 2001 HOH HOH . K 9 HOH A 2 2002 2002 HOH HOH . K 9 HOH A 3 2003 2003 HOH HOH . K 9 HOH A 4 2004 2004 HOH HOH . K 9 HOH A 5 2005 2005 HOH HOH . K 9 HOH A 6 2006 2006 HOH HOH . K 9 HOH A 7 2007 2007 HOH HOH . K 9 HOH A 8 2008 2008 HOH HOH . K 9 HOH A 9 2009 2009 HOH HOH . K 9 HOH A 10 2010 2010 HOH HOH . K 9 HOH A 11 2011 2011 HOH HOH . K 9 HOH A 12 2012 2012 HOH HOH . K 9 HOH A 13 2013 2013 HOH HOH . K 9 HOH A 14 2014 2014 HOH HOH . K 9 HOH A 15 2015 2015 HOH HOH . K 9 HOH A 16 2016 2016 HOH HOH . K 9 HOH A 17 2017 2017 HOH HOH . K 9 HOH A 18 2018 2018 HOH HOH . K 9 HOH A 19 2019 2019 HOH HOH . K 9 HOH A 20 2020 2020 HOH HOH . K 9 HOH A 21 2021 2021 HOH HOH . K 9 HOH A 22 2022 2022 HOH HOH . K 9 HOH A 23 2023 2023 HOH HOH . K 9 HOH A 24 2024 2024 HOH HOH . K 9 HOH A 25 2025 2025 HOH HOH . K 9 HOH A 26 2026 2026 HOH HOH . K 9 HOH A 27 2027 2027 HOH HOH . K 9 HOH A 28 2028 2028 HOH HOH . K 9 HOH A 29 2029 2029 HOH HOH . K 9 HOH A 30 2030 2030 HOH HOH . K 9 HOH A 31 2031 2031 HOH HOH . K 9 HOH A 32 2032 2032 HOH HOH . K 9 HOH A 33 2033 2033 HOH HOH . K 9 HOH A 34 2034 2034 HOH HOH . K 9 HOH A 35 2035 2035 HOH HOH . K 9 HOH A 36 2036 2036 HOH HOH . K 9 HOH A 37 2037 2037 HOH HOH . K 9 HOH A 38 2038 2038 HOH HOH . K 9 HOH A 39 2039 2039 HOH HOH . K 9 HOH A 40 2040 2040 HOH HOH . K 9 HOH A 41 2041 2041 HOH HOH . K 9 HOH A 42 2042 2042 HOH HOH . K 9 HOH A 43 2043 2043 HOH HOH . K 9 HOH A 44 2044 2044 HOH HOH . K 9 HOH A 45 2045 2045 HOH HOH . K 9 HOH A 46 2046 2046 HOH HOH . K 9 HOH A 47 2047 2047 HOH HOH . K 9 HOH A 48 2048 2048 HOH HOH . K 9 HOH A 49 2049 2049 HOH HOH . K 9 HOH A 50 2050 2050 HOH HOH . K 9 HOH A 51 2051 2051 HOH HOH . K 9 HOH A 52 2052 2052 HOH HOH . K 9 HOH A 53 2053 2053 HOH HOH . K 9 HOH A 54 2054 2054 HOH HOH . K 9 HOH A 55 2055 2055 HOH HOH . K 9 HOH A 56 2056 2056 HOH HOH . K 9 HOH A 57 2057 2057 HOH HOH . K 9 HOH A 58 2058 2058 HOH HOH . K 9 HOH A 59 2059 2059 HOH HOH . K 9 HOH A 60 2060 2060 HOH HOH . K 9 HOH A 61 2061 2061 HOH HOH . K 9 HOH A 62 2062 2062 HOH HOH . K 9 HOH A 63 2063 2063 HOH HOH . K 9 HOH A 64 2064 2064 HOH HOH . K 9 HOH A 65 2065 2065 HOH HOH . K 9 HOH A 66 2066 2066 HOH HOH . K 9 HOH A 67 2067 2067 HOH HOH . K 9 HOH A 68 2068 2068 HOH HOH . K 9 HOH A 69 2069 2069 HOH HOH . K 9 HOH A 70 2070 2070 HOH HOH . K 9 HOH A 71 2071 2071 HOH HOH . K 9 HOH A 72 2072 2072 HOH HOH . K 9 HOH A 73 2073 2073 HOH HOH . K 9 HOH A 74 2074 2074 HOH HOH . K 9 HOH A 75 2075 2075 HOH HOH . K 9 HOH A 76 2076 2076 HOH HOH . K 9 HOH A 77 2077 2077 HOH HOH . K 9 HOH A 78 2078 2078 HOH HOH . K 9 HOH A 79 2079 2079 HOH HOH . K 9 HOH A 80 2080 2080 HOH HOH . K 9 HOH A 81 2081 2081 HOH HOH . K 9 HOH A 82 2082 2082 HOH HOH . K 9 HOH A 83 2083 2083 HOH HOH . K 9 HOH A 84 2084 2084 HOH HOH . K 9 HOH A 85 2085 2085 HOH HOH . K 9 HOH A 86 2086 2086 HOH HOH . K 9 HOH A 87 2087 2087 HOH HOH . K 9 HOH A 88 2088 2088 HOH HOH . K 9 HOH A 89 2089 2089 HOH HOH . L 9 HOH B 1 2001 2001 HOH HOH . L 9 HOH B 2 2002 2002 HOH HOH . L 9 HOH B 3 2003 2003 HOH HOH . L 9 HOH B 4 2004 2004 HOH HOH . L 9 HOH B 5 2005 2005 HOH HOH . L 9 HOH B 6 2006 2006 HOH HOH . L 9 HOH B 7 2007 2007 HOH HOH . L 9 HOH B 8 2008 2008 HOH HOH . L 9 HOH B 9 2009 2009 HOH HOH . L 9 HOH B 10 2010 2010 HOH HOH . L 9 HOH B 11 2011 2011 HOH HOH . L 9 HOH B 12 2012 2012 HOH HOH . L 9 HOH B 13 2013 2013 HOH HOH . L 9 HOH B 14 2014 2014 HOH HOH . L 9 HOH B 15 2015 2015 HOH HOH . L 9 HOH B 16 2016 2016 HOH HOH . L 9 HOH B 17 2017 2017 HOH HOH . L 9 HOH B 18 2018 2018 HOH HOH . L 9 HOH B 19 2019 2019 HOH HOH . L 9 HOH B 20 2020 2020 HOH HOH . L 9 HOH B 21 2021 2021 HOH HOH . L 9 HOH B 22 2022 2022 HOH HOH . L 9 HOH B 23 2023 2023 HOH HOH . L 9 HOH B 24 2024 2024 HOH HOH . L 9 HOH B 25 2025 2025 HOH HOH . L 9 HOH B 26 2026 2026 HOH HOH . L 9 HOH B 27 2027 2027 HOH HOH . L 9 HOH B 28 2028 2028 HOH HOH . L 9 HOH B 29 2029 2029 HOH HOH . L 9 HOH B 30 2030 2030 HOH HOH . L 9 HOH B 31 2031 2031 HOH HOH . L 9 HOH B 32 2032 2032 HOH HOH . L 9 HOH B 33 2033 2033 HOH HOH . L 9 HOH B 34 2034 2034 HOH HOH . L 9 HOH B 35 2035 2035 HOH HOH . L 9 HOH B 36 2036 2036 HOH HOH . L 9 HOH B 37 2037 2037 HOH HOH . L 9 HOH B 38 2038 2038 HOH HOH . L 9 HOH B 39 2039 2039 HOH HOH . L 9 HOH B 40 2040 2040 HOH HOH . L 9 HOH B 41 2041 2041 HOH HOH . L 9 HOH B 42 2042 2042 HOH HOH . L 9 HOH B 43 2043 2043 HOH HOH . L 9 HOH B 44 2044 2044 HOH HOH . M 9 HOH C 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ F9V . B . J 8 33.88 24.658 -6.142 0.5 31.75 ? CAJ F9V 1005 C 1 HETATM 2 O OAP F9V . B . J 8 34.003 23.689 -6.891 0.5 29.71 ? OAP F9V 1005 C 1 HETATM 3 C CAK F9V . B . J 8 33.941 26.077 -6.682 0.5 33.83 ? CAK F9V 1005 C 1 HETATM 4 C CAL F9V . B . J 8 33.738 25.897 -8.167 0.5 31.87 ? CAL F9V 1005 C 1 HETATM 5 C CAM F9V . B . J 8 34.155 27.144 -8.926 0.5 32.18 ? CAM F9V 1005 C 1 HETATM 6 O OAO F9V . B . J 8 34.352 26.976 -10.159 0.5 32.83 ? OAO F9V 1005 C 1 HETATM 7 O OAN F9V . B . J 8 34.214 28.22 -8.276 0.5 28.79 ? OAN F9V 1005 C 1 HETATM 8 C CAU F9V . B . J 8 32.386 25.756 -8.258 0.5 31.62 ? CAU F9V 1005 C 1 HETATM 9 C CAT F9V . B . J 8 31.675 25.995 -7.093 0.5 30.42 ? CAT F9V 1005 C 1 HETATM 10 C CAS F9V . B . J 8 30.299 25.851 -7.063 0.5 30.03 ? CAS F9V 1005 C 1 HETATM 11 C CAR F9V . B . J 8 29.624 25.503 -8.22 0.5 30.36 ? CAR F9V 1005 C 1 HETATM 12 C CAQ F9V . B . J 8 30.344 25.261 -9.396 0.5 31.66 ? CAQ F9V 1005 C 1 HETATM 13 C CAV F9V . B . J 8 31.732 25.382 -9.424 0.5 30.86 ? CAV F9V 1005 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #