data_4UTX # _model_server_result.job_id zHYNq22P3ea9_mcDEJD7bA _model_server_result.datetime_utc '2024-11-05 21:24:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4utx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1302}' # _entry.id 4UTX # _exptl.entry_id 4UTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UTX _cell.length_a 87.49 _cell.length_b 87.49 _cell.length_c 313.79 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L,M 1 1 B,G,H,I,J,K,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 251 A CYS 274 1_555 B SG CYS 251 B CYS 274 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 C C BEZ 1 C BEZ 0 1_555 C N GLY 2 C GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 C NZ LYS 5 C LYS 4 1_555 L C1 3NP . C 3NP 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? metalc ? metalc1 A SG CYS 139 A CYS 162 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A SG CYS 142 A CYS 165 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A SG CYS 180 A CYS 203 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc4 A SG CYS 185 A CYS 208 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc5 B SG CYS 139 B CYS 162 1_555 G ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc6 B SG CYS 142 B CYS 165 1_555 G ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc7 B SG CYS 180 B CYS 203 1_555 G ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc8 B SG CYS 185 B CYS 208 1_555 G ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc9 B OD1 ASP 201 B ASP 224 1_555 K NA NA . B NA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc10 B OD1 ASP 201 B ASP 224 12_544 K NA NA . B NA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc11 B OD2 ASP 203 B ASP 226 12_544 K NA NA . B NA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc12 B OD2 ASP 203 B ASP 226 1_555 K NA NA . B NA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 119 n n C1 C2 EDO sing 120 n n C1 H11 EDO sing 121 n n C1 H12 EDO sing 122 n n O1 HO1 EDO sing 123 n n C2 O2 EDO sing 124 n n C2 H21 EDO sing 125 n n C2 H22 EDO sing 126 n n O2 HO2 EDO sing 127 n n # _atom_sites.entry_id 4UTX _atom_sites.fract_transf_matrix[1][1] 0.01143 _atom_sites.fract_transf_matrix[1][2] 0.006599 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 1299 1299 ZN ZN . E 4 EDO A 1 1300 1300 EDO EDO . F 4 EDO A 1 1301 1301 EDO EDO . G 3 ZN B 1 1299 1299 ZN ZN . H 5 EPE B 1 1300 1300 EPE EPE . I 6 DMS B 1 1301 1301 DMS DMS . J 4 EDO B 1 1302 1302 EDO EDO . K 7 NA B 1 1303 1303 NA NA . L 8 3NP C 1 1004 1004 3NP 3NP . M 9 HOH A 1 2001 2001 HOH HOH . M 9 HOH A 2 2002 2002 HOH HOH . M 9 HOH A 3 2003 2003 HOH HOH . M 9 HOH A 4 2004 2004 HOH HOH . M 9 HOH A 5 2005 2005 HOH HOH . M 9 HOH A 6 2006 2006 HOH HOH . M 9 HOH A 7 2007 2007 HOH HOH . M 9 HOH A 8 2008 2008 HOH HOH . M 9 HOH A 9 2009 2009 HOH HOH . M 9 HOH A 10 2010 2010 HOH HOH . M 9 HOH A 11 2011 2011 HOH HOH . M 9 HOH A 12 2012 2012 HOH HOH . M 9 HOH A 13 2013 2013 HOH HOH . M 9 HOH A 14 2014 2014 HOH HOH . M 9 HOH A 15 2015 2015 HOH HOH . M 9 HOH A 16 2016 2016 HOH HOH . M 9 HOH A 17 2017 2017 HOH HOH . M 9 HOH A 18 2018 2018 HOH HOH . M 9 HOH A 19 2019 2019 HOH HOH . M 9 HOH A 20 2020 2020 HOH HOH . M 9 HOH A 21 2021 2021 HOH HOH . M 9 HOH A 22 2022 2022 HOH HOH . M 9 HOH A 23 2023 2023 HOH HOH . N 9 HOH B 1 2001 2001 HOH HOH . N 9 HOH B 2 2002 2002 HOH HOH . N 9 HOH B 3 2003 2003 HOH HOH . N 9 HOH B 4 2004 2004 HOH HOH . N 9 HOH B 5 2005 2005 HOH HOH . N 9 HOH B 6 2006 2006 HOH HOH . N 9 HOH B 7 2007 2007 HOH HOH . N 9 HOH B 8 2008 2008 HOH HOH . N 9 HOH B 9 2009 2009 HOH HOH . N 9 HOH B 10 2010 2010 HOH HOH . N 9 HOH B 11 2011 2011 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 3.207 -25.866 -30.065 1 63 ? C1 EDO 1302 B 1 HETATM 2 O O1 EDO . . . J 4 4.589 -25.829 -30.494 1 56.53 ? O1 EDO 1302 B 1 HETATM 3 C C2 EDO . . . J 4 2.834 -24.948 -28.86 1 64.05 ? C2 EDO 1302 B 1 HETATM 4 O O2 EDO . . . J 4 3.17 -25.48 -27.55 1 56.16 ? O2 EDO 1302 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 4 #