data_4UTZ # _model_server_result.job_id KClAHpKnbiN8i_fFIUY6Cg _model_server_result.datetime_utc '2024-11-05 21:04:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4utz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1004}' # _entry.id 4UTZ # _exptl.entry_id 4UTZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.141 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'hexanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UTZ _cell.length_a 87.32 _cell.length_b 87.32 _cell.length_c 314.57 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UTZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,J,K 1 1 B,E,F,G,H,I,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 251 A CYS 274 1_555 B SG CYS 251 B CYS 274 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 C C BEZ 1 D BEZ 0 1_555 C N GLY 2 D GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale2 C NZ LYS 5 D LYS 4 1_555 J C7 0L1 . D 0L1 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? metalc ? metalc1 A SG CYS 139 A CYS 162 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A SG CYS 142 A CYS 165 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A SG CYS 180 A CYS 203 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 A SG CYS 185 A CYS 208 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc5 B SG CYS 139 B CYS 162 1_555 E ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 B SG CYS 142 B CYS 165 1_555 E ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc7 B SG CYS 180 B CYS 203 1_555 E ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 B SG CYS 185 B CYS 208 1_555 E ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc9 B OD2 ASP 201 B ASP 224 1_555 H NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc10 B OD2 ASP 201 B ASP 224 12_564 H NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc11 B OD2 ASP 203 B ASP 226 1_555 H NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc12 B OD2 ASP 203 B ASP 226 12_564 H NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? # _chem_comp.formula 'C6 H10 O4' _chem_comp.formula_weight 146.141 _chem_comp.id 0L1 _chem_comp.mon_nstd_flag . _chem_comp.name 'hexanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Adipic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 0L1 doub 1 n n C2 C3 0L1 sing 2 n n C2 O1 0L1 sing 3 n n C3 C4 0L1 sing 4 n n C4 C5 0L1 sing 5 n n C5 C6 0L1 sing 6 n n C6 C7 0L1 sing 7 n n C7 O4 0L1 doub 8 n n C7 O3 0L1 sing 9 n n O1 H1 0L1 sing 10 n n C3 H2 0L1 sing 11 n n C3 H3 0L1 sing 12 n n C4 H4 0L1 sing 13 n n C4 H5 0L1 sing 14 n n C5 H6 0L1 sing 15 n n C5 H7 0L1 sing 16 n n C6 H8 0L1 sing 17 n n C6 H9 0L1 sing 18 n n O3 H10 0L1 sing 19 n n # _atom_sites.entry_id 4UTZ _atom_sites.fract_transf_matrix[1][1] 0.011452 _atom_sites.fract_transf_matrix[1][2] 0.006612 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 1299 1299 ZN ZN . E 3 ZN B 1 1299 1299 ZN ZN . F 4 EPE B 1 1300 1300 EPE EPE . G 5 DMS B 1 1301 1301 DMS DMS . H 6 NA B 1 1302 1302 NA NA . I 7 EDO B 1 1303 1303 EDO EDO . J 8 0L1 D 1 1004 1004 0L1 0L1 . K 9 HOH A 1 2001 2001 HOH HOH . K 9 HOH A 2 2002 2002 HOH HOH . K 9 HOH A 3 2003 2003 HOH HOH . K 9 HOH A 4 2004 2004 HOH HOH . K 9 HOH A 5 2005 2005 HOH HOH . K 9 HOH A 6 2006 2006 HOH HOH . K 9 HOH A 7 2007 2007 HOH HOH . K 9 HOH A 8 2008 2008 HOH HOH . K 9 HOH A 9 2009 2009 HOH HOH . K 9 HOH A 10 2010 2010 HOH HOH . K 9 HOH A 11 2011 2011 HOH HOH . K 9 HOH A 12 2012 2012 HOH HOH . K 9 HOH A 13 2013 2013 HOH HOH . K 9 HOH A 14 2014 2014 HOH HOH . K 9 HOH A 15 2015 2015 HOH HOH . K 9 HOH A 16 2016 2016 HOH HOH . K 9 HOH A 17 2017 2017 HOH HOH . L 9 HOH B 1 2001 2001 HOH HOH . L 9 HOH B 2 2002 2002 HOH HOH . L 9 HOH B 3 2003 2003 HOH HOH . L 9 HOH B 4 2004 2004 HOH HOH . L 9 HOH B 5 2005 2005 HOH HOH . L 9 HOH B 6 2006 2006 HOH HOH . L 9 HOH B 7 2007 2007 HOH HOH . L 9 HOH B 8 2008 2008 HOH HOH . L 9 HOH B 9 2009 2009 HOH HOH . L 9 HOH B 10 2010 2010 HOH HOH . L 9 HOH B 11 2011 2011 HOH HOH . L 9 HOH B 12 2012 2012 HOH HOH . L 9 HOH B 13 2013 2013 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 0L1 . . . J 8 32.076 27.925 -7.763 1 65.8 ? O1 0L1 1004 D 1 HETATM 2 C C2 0L1 . . . J 8 31.892 26.7 -7.917 1 64.81 ? C2 0L1 1004 D 1 HETATM 3 O O2 0L1 . . . J 8 32.243 26.009 -8.889 1 66.34 ? O2 0L1 1004 D 1 HETATM 4 C C3 0L1 . . . J 8 31.061 25.997 -6.925 1 64.21 ? C3 0L1 1004 D 1 HETATM 5 C C4 0L1 . . . J 8 31.447 26.518 -5.551 1 61.48 ? C4 0L1 1004 D 1 HETATM 6 C C5 0L1 . . . J 8 30.091 26.682 -4.903 1 61.27 ? C5 0L1 1004 D 1 HETATM 7 C C6 0L1 . . . J 8 29.323 25.367 -4.985 1 61.76 ? C6 0L1 1004 D 1 HETATM 8 C C7 0L1 . . . J 8 30.043 24.284 -4.176 1 62.88 ? C7 0L1 1004 D 1 HETATM 9 O O4 0L1 . . . J 8 30.145 23.163 -4.654 1 61.1 ? O4 0L1 1004 D 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 9 #