data_4UU1 # _model_server_result.job_id mmDflzVdHW6fZw5nBIvQUw _model_server_result.datetime_utc '2025-06-19 03:49:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uu1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1996}' # _entry.id 4UU1 # _exptl.entry_id 4UU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UU1 _cell.length_a 71.703 _cell.length_b 71.703 _cell.length_c 591.318 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 877 A CYS 876 1_555 A SG CYS 889 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? metalc ? metalc1 A OE1 GLN 245 A GLN 244 1_555 I K K . A K 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc2 A O LEU 712 A LEU 711 1_555 I K K . A K 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc3 A O LYS 713 A LYS 712 1_555 I K K . A K 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc4 A O ALA 715 A ALA 714 1_555 I K K . A K 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc5 A OE2 GLU 733 A GLU 732 1_555 I K K . A K 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.343 ? metalc ? metalc6 A OE1 GLU 733 A GLU 732 1_555 I K K . A K 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc7 H PB ACP . A ACP 1996 1_555 J MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc8 H O1B ACP . A ACP 1996 1_555 J MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc9 H O2B ACP . A ACP 1996 1_555 J MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id ACP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ACP doub 7 n n PG O2G ACP sing 8 n n PG O3G ACP sing 9 n n PG C3B ACP sing 10 n n O2G HOG2 ACP sing 11 n n O3G HOG3 ACP sing 12 n n PB O1B ACP doub 13 n n PB O2B ACP sing 14 n n PB C3B ACP sing 15 n n PB O3A ACP sing 16 n n O2B HOB2 ACP sing 17 n n C3B H3B1 ACP sing 18 n n C3B H3B2 ACP sing 19 n n PA O1A ACP doub 20 n n PA O2A ACP sing 21 n n PA O3A ACP sing 22 n n PA O5' ACP sing 23 n n O2A HOA2 ACP sing 24 n n O5' C5' ACP sing 25 n n C5' C4' ACP sing 26 n n C5' "H5'1" ACP sing 27 n n C5' "H5'2" ACP sing 28 n n C4' O4' ACP sing 29 n n C4' C3' ACP sing 30 n n C4' H4' ACP sing 31 n n O4' C1' ACP sing 32 n n C3' O3' ACP sing 33 n n C3' C2' ACP sing 34 n n C3' H3' ACP sing 35 n n O3' HO3' ACP sing 36 n n C2' O2' ACP sing 37 n n C2' C1' ACP sing 38 n n C2' H2' ACP sing 39 n n O2' HO2' ACP sing 40 n n C1' N9 ACP sing 41 n n C1' H1' ACP sing 42 n n N9 C8 ACP sing 43 n y N9 C4 ACP sing 44 n y C8 N7 ACP doub 45 n y C8 H8 ACP sing 46 n n N7 C5 ACP sing 47 n y C5 C6 ACP sing 48 n y C5 C4 ACP doub 49 n y C6 N6 ACP sing 50 n n C6 N1 ACP doub 51 n y N6 HN61 ACP sing 52 n n N6 HN62 ACP sing 53 n n N1 C2 ACP sing 54 n y C2 N3 ACP doub 55 n y C2 H2 ACP sing 56 n n N3 C4 ACP sing 57 n y # _atom_sites.entry_id 4UU1 _atom_sites.fract_transf_matrix[1][1] 0.013946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TG1 A 1 1003 1003 TG1 TG1 . C 3 PCW A 1 1101 1101 PCW PCW . D 3 PCW A 1 1102 1102 PCW PCW . E 3 PCW A 1 1103 1103 PCW PCW . F 4 GOL A 1 1301 1301 GOL GOL . G 4 GOL A 1 1302 1302 GOL GOL . H 5 ACP A 1 1996 1996 ACP ACP . I 6 K A 1 2001 2001 K K . J 7 MG A 1 2002 2002 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ACP . . . H 5 -2.018 34.459 -16.674 0.7 133.66 ? PG ACP 1996 A 1 HETATM 2 O O1G ACP . . . H 5 -0.588 34.799 -17.251 0.7 84.5 ? O1G ACP 1996 A 1 HETATM 3 O O2G ACP . . . H 5 -2.665 35.869 -17.022 0.7 50.82 ? O2G ACP 1996 A 1 HETATM 4 O O3G ACP . . . H 5 -2.8 33.461 -17.444 0.7 128.2 ? O3G ACP 1996 A 1 HETATM 5 P PB ACP . . . H 5 -0.82 33.904 -13.908 0.7 107.88 ? PB ACP 1996 A 1 HETATM 6 O O1B ACP . . . H 5 -0.278 35.223 -13.247 0.7 102.11 ? O1B ACP 1996 A 1 HETATM 7 O O2B ACP . . . H 5 0.287 33.04 -14.371 0.7 106.21 ? O2B ACP 1996 A 1 HETATM 8 C C3B ACP . . . H 5 -2.032 34.151 -15.042 0.7 74.29 ? C3B ACP 1996 A 1 HETATM 9 P PA ACP . . . H 5 -1.774 32.649 -11.255 0.7 100.45 ? PA ACP 1996 A 1 HETATM 10 O O1A ACP . . . H 5 -0.295 32.621 -10.749 0.7 56.88 ? O1A ACP 1996 A 1 HETATM 11 O O2A ACP . . . H 5 -2.484 31.357 -11.197 0.7 94.51 ? O2A ACP 1996 A 1 HETATM 12 O O3A ACP . . . H 5 -1.6 33.224 -12.702 0.7 172.56 ? O3A ACP 1996 A 1 HETATM 13 O O5' ACP . . . H 5 -2.241 33.872 -10.334 0.7 119.45 ? O5' ACP 1996 A 1 HETATM 14 C C5' ACP . . . H 5 -2.837 33.703 -9.073 0.7 114.53 ? C5' ACP 1996 A 1 HETATM 15 C C4' ACP . . . H 5 -2.105 34.518 -7.987 0.7 112.97 ? C4' ACP 1996 A 1 HETATM 16 O O4' ACP . . . H 5 -0.916 33.828 -7.691 0.7 103.85 ? O4' ACP 1996 A 1 HETATM 17 C C3' ACP . . . H 5 -1.666 35.905 -8.513 0.7 123.77 ? C3' ACP 1996 A 1 HETATM 18 O O3' ACP . . . H 5 -2.643 36.82 -8.154 0.7 129.18 ? O3' ACP 1996 A 1 HETATM 19 C C2' ACP . . . H 5 -0.352 36.148 -7.714 0.7 95.58 ? C2' ACP 1996 A 1 HETATM 20 O O2' ACP . . . H 5 -0.518 36.965 -6.604 0.7 92.79 ? O2' ACP 1996 A 1 HETATM 21 C C1' ACP . . . H 5 0.074 34.723 -7.25 0.7 94.21 ? C1' ACP 1996 A 1 HETATM 22 N N9 ACP . . . H 5 1.375 34.314 -7.806 0.7 94.88 ? N9 ACP 1996 A 1 HETATM 23 C C8 ACP . . . H 5 1.933 34.372 -9.118 0.7 95.52 ? C8 ACP 1996 A 1 HETATM 24 N N7 ACP . . . H 5 3.178 33.884 -9.214 0.7 93.07 ? N7 ACP 1996 A 1 HETATM 25 C C5 ACP . . . H 5 3.471 33.472 -7.903 0.7 90.67 ? C5 ACP 1996 A 1 HETATM 26 C C6 ACP . . . H 5 4.615 32.863 -7.331 0.7 81.48 ? C6 ACP 1996 A 1 HETATM 27 N N6 ACP . . . H 5 5.703 32.575 -8.092 0.7 77.92 ? N6 ACP 1996 A 1 HETATM 28 N N1 ACP . . . H 5 4.619 32.545 -5.986 0.7 76.1 ? N1 ACP 1996 A 1 HETATM 29 C C2 ACP . . . H 5 3.493 32.852 -5.27 0.7 80.26 ? C2 ACP 1996 A 1 HETATM 30 N N3 ACP . . . H 5 2.338 33.43 -5.685 0.7 85.25 ? N3 ACP 1996 A 1 HETATM 31 C C4 ACP . . . H 5 2.373 33.724 -7.027 0.7 92.49 ? C4 ACP 1996 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #