data_4UUA # _model_server_result.job_id gXbcJ8d7tB445NcwzOVe8g _model_server_result.datetime_utc '2024-11-05 21:02:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uua # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1300}' # _entry.id 4UUA # _exptl.entry_id 4UUA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.235 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[(benzyloxy)carbonyl]-L-aspartic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UUA _cell.length_a 87.19 _cell.length_b 87.19 _cell.length_c 313.87 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UUA _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,F,G,H,I,J,K,N 1 1 A,C,D,E,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 251 A CYS 274 1_555 B SG CYS 251 B CYS 274 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale1 C C BEZ 1 D BEZ 0 1_555 C N GLY 2 D GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale2 C NZ LYS 5 D LYS 4 1_555 L CG NX6 . D NX6 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? metalc ? metalc1 A SG CYS 139 A CYS 162 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A SG CYS 142 A CYS 165 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc3 A SG CYS 180 A CYS 203 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc4 A SG CYS 185 A CYS 208 1_555 D ZN ZN . A ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc5 B SG CYS 139 B CYS 162 1_555 F ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc6 B SG CYS 142 B CYS 165 1_555 F ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 B SG CYS 180 B CYS 203 1_555 F ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc8 B SG CYS 185 B CYS 208 1_555 F ZN ZN . B ZN 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc9 B OD1 ASP 201 B ASP 224 12_544 J NA NA . B NA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc10 B OD1 ASP 201 B ASP 224 1_555 J NA NA . B NA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc11 B OD2 ASP 203 B ASP 226 12_544 J NA NA . B NA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc12 B OD2 ASP 203 B ASP 226 1_555 J NA NA . B NA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? # _chem_comp.formula 'C12 H13 N O6' _chem_comp.formula_weight 267.235 _chem_comp.id NX6 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[(benzyloxy)carbonyl]-L-aspartic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C NX6 doub 303 n n C CA NX6 sing 304 n n C OXT NX6 sing 305 n n CA N NX6 sing 306 n n N C1 NX6 sing 307 n n N HN NX6 sing 308 n n O1 C1 NX6 doub 309 n n C1 O2 NX6 sing 310 n n O2 C2 NX6 sing 311 n n C2 C3 NX6 sing 312 n n C2 H2 NX6 sing 313 n n C2 H2A NX6 sing 314 n n C8 C3 NX6 doub 315 n y C3 C4 NX6 sing 316 n y C4 C5 NX6 doub 317 n y C4 H4 NX6 sing 318 n n C6 C5 NX6 sing 319 n y C5 H5 NX6 sing 320 n n C7 C6 NX6 doub 321 n y C6 H6 NX6 sing 322 n n C8 C7 NX6 sing 323 n y C7 H7 NX6 sing 324 n n C8 H8 NX6 sing 325 n n CB CA NX6 sing 326 n n CA HA NX6 sing 327 n n CG CB NX6 sing 328 n n CB HB NX6 sing 329 n n CB HBA NX6 sing 330 n n OD2 CG NX6 doub 331 n n CG OD1 NX6 sing 332 n n OD1 HOD1 NX6 sing 333 n n OXT HOXT NX6 sing 334 n n # _atom_sites.entry_id 4UUA _atom_sites.fract_transf_matrix[1][1] 0.011469 _atom_sites.fract_transf_matrix[1][2] 0.006622 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 1299 1299 ZN ZN . E 4 EDO A 1 1301 1301 EDO EDO . F 3 ZN B 1 1299 1299 ZN ZN . G 5 EPE B 1 1300 1300 EPE EPE . H 6 DMS B 1 1301 1301 DMS DMS . I 4 EDO B 1 1302 1302 EDO EDO . J 7 NA B 1 1303 1303 NA NA . K 4 EDO B 1 1304 1304 EDO EDO . L 8 NX6 D 1 1300 1300 NX6 NX6 . M 9 HOH A 1 2001 2001 HOH HOH . M 9 HOH A 2 2002 2002 HOH HOH . M 9 HOH A 3 2003 2003 HOH HOH . M 9 HOH A 4 2004 2004 HOH HOH . M 9 HOH A 5 2005 2005 HOH HOH . M 9 HOH A 6 2006 2006 HOH HOH . M 9 HOH A 7 2007 2007 HOH HOH . M 9 HOH A 8 2008 2008 HOH HOH . M 9 HOH A 9 2009 2009 HOH HOH . M 9 HOH A 10 2010 2010 HOH HOH . M 9 HOH A 11 2011 2011 HOH HOH . M 9 HOH A 12 2012 2012 HOH HOH . M 9 HOH A 13 2013 2013 HOH HOH . M 9 HOH A 14 2014 2014 HOH HOH . M 9 HOH A 15 2015 2015 HOH HOH . M 9 HOH A 16 2016 2016 HOH HOH . M 9 HOH A 17 2017 2017 HOH HOH . M 9 HOH A 18 2018 2018 HOH HOH . M 9 HOH A 19 2019 2019 HOH HOH . M 9 HOH A 20 2020 2020 HOH HOH . M 9 HOH A 21 2021 2021 HOH HOH . M 9 HOH A 22 2022 2022 HOH HOH . M 9 HOH A 23 2023 2023 HOH HOH . M 9 HOH A 24 2024 2024 HOH HOH . M 9 HOH A 25 2025 2025 HOH HOH . M 9 HOH A 26 2026 2026 HOH HOH . M 9 HOH A 27 2027 2027 HOH HOH . M 9 HOH A 28 2028 2028 HOH HOH . M 9 HOH A 29 2029 2029 HOH HOH . M 9 HOH A 30 2030 2030 HOH HOH . M 9 HOH A 31 2031 2031 HOH HOH . M 9 HOH A 32 2032 2032 HOH HOH . M 9 HOH A 33 2033 2033 HOH HOH . M 9 HOH A 34 2034 2034 HOH HOH . N 9 HOH B 1 2001 2001 HOH HOH . N 9 HOH B 2 2002 2002 HOH HOH . N 9 HOH B 3 2003 2003 HOH HOH . N 9 HOH B 4 2004 2004 HOH HOH . N 9 HOH B 5 2005 2005 HOH HOH . N 9 HOH B 6 2006 2006 HOH HOH . N 9 HOH B 7 2007 2007 HOH HOH . N 9 HOH B 8 2008 2008 HOH HOH . N 9 HOH B 9 2009 2009 HOH HOH . N 9 HOH B 10 2010 2010 HOH HOH . N 9 HOH B 11 2011 2011 HOH HOH . N 9 HOH B 12 2012 2012 HOH HOH . N 9 HOH B 13 2013 2013 HOH HOH . N 9 HOH B 14 2014 2014 HOH HOH . N 9 HOH B 15 2015 2015 HOH HOH . N 9 HOH B 16 2016 2016 HOH HOH . N 9 HOH B 17 2017 2017 HOH HOH . N 9 HOH B 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C NX6 . . . L 8 -32.05 -27.062 -7.517 1 75.6 ? C NX6 1300 D 1 HETATM 2 N N NX6 . . . L 8 -30.281 -25.416 -7.02 1 101.83 ? N NX6 1300 D 1 HETATM 3 O O NX6 . . . L 8 -32.302 -28.274 -7.532 1 67.65 ? O NX6 1300 D 1 HETATM 4 C C1 NX6 . . . L 8 -29.122 -24.933 -6.541 1 96.72 ? C1 NX6 1300 D 1 HETATM 5 O O1 NX6 . . . L 8 -28.525 -25.535 -5.636 1 75.54 ? O1 NX6 1300 D 1 HETATM 6 C C2 NX6 . . . L 8 -27.321 -23.418 -7.337 1 107.66 ? C2 NX6 1300 D 1 HETATM 7 O O2 NX6 . . . L 8 -28.698 -23.732 -7.095 1 105.59 ? O2 NX6 1300 D 1 HETATM 8 C C3 NX6 . . . L 8 -26.792 -23.815 -8.631 1 108.42 ? C3 NX6 1300 D 1 HETATM 9 C C4 NX6 . . . L 8 -26.02 -22.918 -9.393 1 103.49 ? C4 NX6 1300 D 1 HETATM 10 C C5 NX6 . . . L 8 -25.453 -23.282 -10.628 1 101.33 ? C5 NX6 1300 D 1 HETATM 11 C C6 NX6 . . . L 8 -25.624 -24.556 -11.155 1 93.26 ? C6 NX6 1300 D 1 HETATM 12 C C7 NX6 . . . L 8 -26.368 -25.461 -10.414 1 101.94 ? C7 NX6 1300 D 1 HETATM 13 C C8 NX6 . . . L 8 -26.936 -25.1 -9.173 1 108.62 ? C8 NX6 1300 D 1 HETATM 14 C CA NX6 . . . L 8 -30.871 -26.709 -6.633 1 85.56 ? CA NX6 1300 D 1 HETATM 15 C CB NX6 . . . L 8 -31.381 -26.72 -5.225 1 87.51 ? CB NX6 1300 D 1 HETATM 16 C CG NX6 . . . L 8 -31.979 -25.378 -4.903 1 86.45 ? CG NX6 1300 D 1 HETATM 17 O OD2 NX6 . . . L 8 -32.752 -24.775 -5.667 1 74.09 ? OD2 NX6 1300 D 1 HETATM 18 O OXT NX6 . . . L 8 -32.661 -26.141 -8.118 1 66.78 ? OXT NX6 1300 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #